Wall clock time and date at job start Tue Mar 31 2020 07:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 C 1.50700 * 109.46903 * 240.00043 * 2 1 3 5 5 H 1.08003 * 119.99807 * 239.99752 * 4 2 1 6 6 C 1.37877 * 119.99918 * 59.99976 * 4 2 1 7 7 N 1.31512 * 120.00158 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99680 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47307 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47224 * 120.00431 * 8 6 4 11 11 H 1.48505 * 109.46831 * 239.99735 * 8 6 4 12 12 C 1.52996 * 109.46989 * 119.99894 * 2 1 3 13 13 N 1.46900 * 109.47450 * 300.00061 * 12 2 1 14 14 C 1.46901 * 110.99890 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.47401 * 34.99821 * 14 13 12 16 16 C 1.50699 * 109.47121 * 274.99849 * 14 13 12 17 17 O 1.20827 * 120.00172 * 0.02562 * 16 14 13 18 18 O 1.34231 * 120.00242 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.46921 * 154.99793 * 14 13 12 20 20 C 1.38247 * 119.97165 * 39.72264 * 19 14 13 21 21 C 1.38203 * 120.02477 * 179.76464 * 20 19 14 22 22 C 1.38465 * 119.96835 * 0.50998 * 21 20 19 23 23 F 1.35100 * 120.02002 * 179.76798 * 22 21 20 24 24 C 1.38450 * 119.95341 * 359.74471 * 22 21 20 25 25 C 1.38200 * 119.97423 * 0.02562 * 24 22 21 26 26 H 1.08997 * 109.47061 * 299.99987 * 1 2 3 27 27 H 1.09000 * 109.47330 * 60.00127 * 1 2 3 28 28 H 1.09005 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47164 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46899 * 300.00137 * 3 2 1 31 31 H 1.09004 * 109.47028 * 59.99621 * 3 2 1 32 32 H 0.97001 * 119.99806 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46846 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.47132 * 60.00445 * 12 2 1 35 35 H 1.00901 * 110.99385 * 303.95419 * 13 12 2 36 36 H 0.96696 * 117.00233 * 180.02562 * 18 16 14 37 37 H 1.07997 * 119.98677 * 0.02562 * 20 19 14 38 38 H 1.07996 * 120.01717 * 180.25898 * 21 20 19 39 39 H 1.08003 * 120.01846 * 179.97438 * 24 22 21 40 40 H 1.08003 * 119.99151 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1874 -4.8166 12 6 2.0400 -0.7212 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0219 -0.6946 3.6703 15 1 3.0239 -1.0903 3.5048 16 6 1.0872 -1.8239 4.0196 17 8 0.1270 -2.0512 3.3222 18 8 1.3213 -2.5774 5.1055 19 6 2.0549 0.2988 4.8030 20 6 1.0420 1.2305 4.9343 21 6 1.0686 2.1389 5.9755 22 6 2.1159 2.1224 6.8812 23 9 2.1454 3.0130 7.8967 24 6 3.1324 1.1923 6.7456 25 6 3.1012 0.2818 5.7064 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7080 1.1608 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 1.8198 0.9436 2.4401 36 1 0.6943 -3.2904 5.2886 37 1 0.2274 1.2458 4.2254 38 1 0.2752 2.8640 6.0803 39 1 3.9500 1.1787 7.4512 40 1 3.8938 -0.4442 5.6007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:49 Heat of formation + Delta-G solvation = -108.058575 kcal Electronic energy + Delta-G solvation = -23955.824331 eV Core-core repulsion = 20264.066243 eV Total energy + Delta-G solvation = -3691.758089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.05495 -40.42430 -39.00373 -36.98070 -35.79403 -34.32656 -31.69429 -31.31538 -29.88382 -26.74096 -25.57652 -25.21327 -23.97642 -23.07670 -22.45763 -20.58609 -18.58566 -18.05765 -17.74402 -16.69847 -16.53817 -16.19950 -15.74749 -15.63043 -15.03041 -14.81769 -14.34197 -14.08168 -13.82349 -13.68117 -13.37795 -13.02289 -12.89766 -12.40797 -12.26662 -12.02563 -11.74210 -11.29734 -11.20472 -11.10840 -11.03634 -10.63582 -10.57627 -10.38869 -10.19517 -10.04240 -9.39077 -9.27022 -9.16786 -8.74924 -8.62672 -8.29920 -7.97827 -5.91331 -4.01573 0.88452 1.07515 2.43905 3.03594 3.30667 3.39141 3.41916 3.44429 4.07898 4.37044 4.46716 4.52579 4.71638 4.72797 5.11800 5.16388 5.34086 5.34546 5.45562 5.72662 5.78655 5.93973 6.06385 6.21494 6.24683 6.34032 6.62426 6.67927 6.70469 6.85228 7.02412 7.16455 7.32137 7.43224 7.60419 7.75022 7.76895 7.83246 8.13845 8.21621 8.33875 8.54844 8.99354 9.63371 11.09269 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.003812 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.535742 B = 7343.245829 C = 7959.814801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.071 3.929 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.074 3.926 13 N -0.662 5.662 14 C 0.141 3.859 15 H 0.086 0.914 16 C 0.478 3.522 17 O -0.477 6.477 18 O -0.524 6.524 19 C -0.101 4.101 20 C -0.064 4.064 21 C -0.155 4.155 22 C 0.100 3.900 23 F -0.142 7.142 24 C -0.157 4.157 25 C -0.068 4.068 26 H 0.020 0.980 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.084 0.916 31 H 0.010 0.990 32 H 0.257 0.743 33 H 0.018 0.982 34 H 0.061 0.939 35 H 0.354 0.646 36 H 0.405 0.595 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -0.019 18.382 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.717 3.283 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.053 4.053 13 N -0.298 5.298 14 C 0.030 3.970 15 H 0.104 0.896 16 C 0.316 3.684 17 O -0.360 6.360 18 O -0.336 6.336 19 C -0.102 4.102 20 C -0.082 4.082 21 C -0.174 4.174 22 C 0.081 3.919 23 F -0.121 7.121 24 C -0.176 4.176 25 C -0.087 4.087 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.263 0.737 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.511 0.067 17.962 18.137 hybrid contribution 0.858 -0.599 -0.575 1.194 sum 3.369 -0.532 17.386 17.718 Atomic orbital electron populations 1.21604 0.97025 0.98874 0.99893 1.18083 0.93477 0.91834 0.89581 1.21852 0.97747 0.99135 1.00359 1.21113 1.31115 1.11846 0.90409 0.92960 1.24871 0.95002 0.94966 0.98675 1.69843 1.36730 1.22842 1.22812 0.86602 0.78601 0.79705 0.83426 1.19973 1.21105 1.21182 1.22323 0.95387 0.98384 0.89249 1.60248 1.63698 1.06474 0.99384 1.19772 0.95757 0.90424 0.91090 0.89628 1.23380 0.85346 0.82129 0.77534 1.90761 1.28388 1.67483 1.49385 1.84516 1.57073 1.45845 1.46171 1.19639 0.96201 0.97452 0.96861 1.21101 0.98229 0.92541 0.96378 1.21183 0.98828 1.01708 0.95636 1.17795 0.96790 0.90131 0.87204 1.91495 1.96501 1.66348 1.57707 1.21069 0.99258 0.96619 1.00644 1.20901 0.97602 0.97376 0.92801 0.96143 0.90876 0.96097 0.96109 0.89684 0.97120 0.93239 0.96340 0.92003 0.82333 0.73669 0.83540 0.84486 0.84622 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 2 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 3 C -0.13 -3.04 7.92 37.16 0.29 -2.75 16 4 C -0.51 -13.52 8.01 -34.44 -0.28 -13.80 16 5 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.32 9.35 55.43 0.52 -23.80 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.07 1.51 4.28 -3.83 -0.02 1.49 16 13 N -0.66 -11.18 4.43 -109.18 -0.48 -11.67 16 14 C 0.14 1.96 2.73 -70.02 -0.19 1.77 16 15 H 0.09 1.09 7.66 -51.93 -0.40 0.69 16 16 C 0.48 7.05 7.49 36.01 0.27 7.32 16 17 O -0.48 -8.93 16.68 -18.75 -0.31 -9.24 16 18 O -0.52 -5.84 13.34 -39.26 -0.52 -6.36 16 19 C -0.10 -1.20 4.64 -104.62 -0.49 -1.68 16 20 C -0.06 -0.76 8.99 -39.59 -0.36 -1.12 16 21 C -0.15 -1.68 10.03 -39.51 -0.40 -2.07 16 22 C 0.10 1.09 7.30 -39.42 -0.29 0.81 16 23 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 24 C -0.16 -1.53 10.03 -39.52 -0.40 -1.93 16 25 C -0.07 -0.69 9.67 -39.59 -0.38 -1.07 16 26 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 27 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 31 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.06 1.35 7.62 -51.93 -0.40 0.96 16 35 H 0.35 5.73 6.02 -39.29 -0.24 5.49 16 36 H 0.41 2.90 9.10 45.56 0.41 3.31 16 37 H 0.15 1.85 7.71 -52.49 -0.40 1.44 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.14 1.09 8.04 -52.48 -0.42 0.67 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -30.38 335.79 -7.29 -37.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.46 Total: 6.21 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.10 Total: -12.33 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.03 Total: -35.47 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.84 Total: -15.60 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.38 -7.29 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.393 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds