Wall clock time and date at job start Tue Mar 31 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 C 1.50700 * 109.46903 * 240.00043 * 2 1 3 5 5 H 1.08003 * 119.99807 * 239.99752 * 4 2 1 6 6 C 1.37877 * 119.99918 * 59.99976 * 4 2 1 7 7 N 1.31512 * 120.00158 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99680 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47307 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47224 * 120.00431 * 8 6 4 11 11 H 1.48505 * 109.46831 * 239.99735 * 8 6 4 12 12 C 1.52996 * 109.46989 * 119.99894 * 2 1 3 13 13 N 1.46900 * 109.47450 * 300.00061 * 12 2 1 14 14 C 1.46901 * 110.99890 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.47401 * 34.99821 * 14 13 12 16 16 C 1.50699 * 109.47121 * 274.99849 * 14 13 12 17 17 O 1.20827 * 120.00172 * 0.02562 * 16 14 13 18 18 O 1.34231 * 120.00242 * 180.02562 * 16 14 13 19 19 C 1.50701 * 109.46921 * 154.99793 * 14 13 12 20 20 C 1.38247 * 119.97165 * 39.72264 * 19 14 13 21 21 C 1.38203 * 120.02477 * 179.76464 * 20 19 14 22 22 C 1.38465 * 119.96835 * 0.50998 * 21 20 19 23 23 F 1.35100 * 120.02002 * 179.76798 * 22 21 20 24 24 C 1.38450 * 119.95341 * 359.74471 * 22 21 20 25 25 C 1.38200 * 119.97423 * 0.02562 * 24 22 21 26 26 H 1.08997 * 109.47061 * 299.99987 * 1 2 3 27 27 H 1.09000 * 109.47330 * 60.00127 * 1 2 3 28 28 H 1.09005 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47164 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46899 * 300.00137 * 3 2 1 31 31 H 1.09004 * 109.47028 * 59.99621 * 3 2 1 32 32 H 0.97001 * 119.99806 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46846 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.47132 * 60.00445 * 12 2 1 35 35 H 1.00901 * 110.99385 * 303.95419 * 13 12 2 36 36 H 0.96696 * 117.00233 * 180.02562 * 18 16 14 37 37 H 1.07997 * 119.98677 * 0.02562 * 20 19 14 38 38 H 1.07996 * 120.01717 * 180.25898 * 21 20 19 39 39 H 1.08003 * 120.01846 * 179.97438 * 24 22 21 40 40 H 1.08003 * 119.99151 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1874 -4.8166 12 6 2.0400 -0.7212 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0219 -0.6946 3.6703 15 1 3.0239 -1.0903 3.5048 16 6 1.0872 -1.8239 4.0196 17 8 0.1270 -2.0512 3.3222 18 8 1.3213 -2.5774 5.1055 19 6 2.0549 0.2988 4.8030 20 6 1.0420 1.2305 4.9343 21 6 1.0686 2.1389 5.9755 22 6 2.1159 2.1224 6.8812 23 9 2.1454 3.0130 7.8967 24 6 3.1324 1.1923 6.7456 25 6 3.1012 0.2818 5.7064 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7080 1.1608 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 1.8198 0.9436 2.4401 36 1 0.6943 -3.2904 5.2886 37 1 0.2274 1.2458 4.2254 38 1 0.2752 2.8640 6.0803 39 1 3.9500 1.1787 7.4512 40 1 3.8938 -0.4442 5.6007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:48 Heat of formation + Delta-G solvation = -126.213672 kcal Electronic energy + Delta-G solvation = -23956.611595 eV Core-core repulsion = 20264.066243 eV Total energy + Delta-G solvation = -3692.545353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.90013 -41.51612 -39.93601 -38.53549 -36.97025 -35.79401 -33.38429 -32.13689 -31.21957 -27.91039 -27.47369 -27.24217 -25.50858 -23.96453 -23.42294 -21.64429 -20.38165 -19.12235 -18.63708 -17.97750 -17.74229 -17.49922 -17.02319 -16.63246 -16.55189 -15.99951 -15.69553 -15.34759 -15.06118 -14.60787 -14.46126 -14.37796 -14.27764 -13.88918 -13.67234 -13.24553 -13.10795 -12.96869 -12.79449 -12.52597 -12.47840 -12.30186 -12.11338 -12.06599 -11.94201 -11.59601 -11.30772 -10.98889 -10.58331 -10.33255 -10.06458 -9.63766 -9.35482 -7.95485 -6.12005 0.02833 0.27871 1.30963 1.41812 1.45382 1.54388 2.03268 2.46949 2.58089 3.25607 3.27036 3.33218 3.51129 3.80570 3.97361 4.13491 4.34579 4.41043 4.47403 4.56198 4.62673 4.88200 4.92291 4.99141 5.03313 5.15018 5.16979 5.23279 5.31247 5.42726 5.45716 5.56044 5.69089 5.71724 5.79101 5.87699 6.00860 6.20956 6.34548 6.44768 6.55881 6.96872 7.12244 7.55392 9.02879 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.003812 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.535742 B = 7343.245829 C = 7959.814801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.061 3.939 3 C -0.121 4.121 4 C -0.525 4.525 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.281 1.281 12 C 0.092 3.908 13 N -0.668 5.668 14 C 0.142 3.858 15 H 0.105 0.895 16 C 0.484 3.516 17 O -0.526 6.526 18 O -0.509 6.509 19 C -0.108 4.108 20 C -0.075 4.075 21 C -0.157 4.157 22 C 0.091 3.909 23 F -0.146 7.146 24 C -0.150 4.150 25 C -0.062 4.062 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.000 1.000 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.257 0.743 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.358 0.642 36 H 0.424 0.576 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -0.234 20.073 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.061 3.939 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.207 1.207 12 C -0.037 4.037 13 N -0.304 5.304 14 C 0.031 3.969 15 H 0.123 0.877 16 C 0.324 3.676 17 O -0.413 6.413 18 O -0.322 6.322 19 C -0.109 4.109 20 C -0.094 4.094 21 C -0.176 4.176 22 C 0.071 3.929 23 F -0.124 7.124 24 C -0.169 4.169 25 C -0.080 4.080 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.182 0.818 36 H 0.285 0.715 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.105 -0.159 19.692 20.116 hybrid contribution 0.353 -0.550 -0.986 1.182 sum 4.458 -0.709 18.706 19.243 Atomic orbital electron populations 1.21418 0.98022 0.97233 0.99104 1.18124 0.92627 0.92663 0.90528 1.21657 0.97782 0.98315 1.00096 1.21445 1.31140 1.11887 0.91895 0.93655 1.25519 0.95326 0.95658 1.01133 1.69974 1.37341 1.23689 1.23166 0.85732 0.77991 0.78823 0.80380 1.19602 1.21258 1.20689 1.21900 0.95505 0.96979 0.89286 1.60028 1.64261 1.06631 0.99526 1.19811 0.96137 0.90668 0.90330 0.87745 1.23550 0.84516 0.82099 0.77405 1.90755 1.30469 1.68934 1.51162 1.84459 1.57381 1.46054 1.44350 1.19522 0.97172 0.97254 0.96904 1.21021 0.98235 0.93368 0.96741 1.21278 0.99327 1.01672 0.95308 1.17985 0.97249 0.90476 0.87147 1.91488 1.96542 1.66571 1.57847 1.21350 0.99322 0.95527 1.00662 1.21129 0.97328 0.97624 0.91947 0.94930 0.93404 0.98029 0.95758 0.92641 0.94607 0.93376 0.95531 0.93999 0.81837 0.71459 0.84881 0.83438 0.82115 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.03 8.09 71.98 0.58 -4.45 16 2 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 3 C -0.12 -5.47 7.92 71.98 0.57 -4.90 16 4 C -0.52 -28.26 8.01 25.60 0.21 -28.06 16 5 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.02 1.23 5.15 84.65 0.44 1.66 16 7 N -0.90 -50.40 9.35 21.45 0.20 -50.20 16 8 Si 0.94 43.39 29.54 68.60 2.03 45.42 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C 0.09 3.68 4.28 86.30 0.37 4.05 16 13 N -0.67 -21.95 4.43 -499.35 -2.21 -24.16 16 14 C 0.14 3.67 2.73 43.42 0.12 3.79 16 15 H 0.11 2.35 7.66 -2.39 -0.02 2.33 16 16 C 0.48 13.66 7.49 71.24 0.53 14.19 16 17 O -0.53 -19.69 16.68 21.96 0.37 -19.33 16 18 O -0.51 -10.13 13.34 -51.42 -0.69 -10.82 16 19 C -0.11 -2.32 4.64 -19.86 -0.09 -2.41 16 20 C -0.08 -1.69 8.99 22.26 0.20 -1.49 16 21 C -0.16 -3.16 10.03 22.32 0.22 -2.93 16 22 C 0.09 1.77 7.30 22.37 0.16 1.93 16 23 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 24 C -0.15 -2.41 10.03 22.31 0.22 -2.19 16 25 C -0.06 -1.03 9.67 22.26 0.22 -0.82 16 26 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 27 H 0.05 2.63 6.07 -2.39 -0.01 2.62 16 28 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 2.86 6.07 -2.39 -0.01 2.84 16 31 H 0.04 1.40 6.57 -2.39 -0.02 1.38 16 32 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.03 1.01 8.06 -2.39 -0.02 0.99 16 34 H 0.04 1.84 7.62 -2.38 -0.02 1.82 16 35 H 0.36 11.11 6.02 -89.69 -0.54 10.57 16 36 H 0.42 5.11 9.10 -74.06 -0.67 4.44 16 37 H 0.13 3.33 7.71 -2.91 -0.02 3.31 16 38 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.16 1.85 8.04 -2.91 -0.02 1.83 16 Total: -1.00 -65.67 335.79 4.05 -61.62 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.14 Total: 18.44 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.72 Total: -18.73 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -2.01 Total: -74.36 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.32 Total: -30.15 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.67 4.05 -61.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.596 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds