Wall clock time and date at job start Tue Mar 31 2020 07:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47117 * 300.00070 * 3 2 1 5 5 F 1.39898 * 109.46901 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47495 * 120.00227 * 2 1 3 7 7 C 1.46900 * 111.00047 * 59.99706 * 6 2 1 8 8 C 1.50697 * 109.47146 * 180.02562 * 7 6 2 9 9 C 1.38636 * 119.75346 * 269.73149 * 8 7 6 10 10 C 1.37616 * 120.25185 * 179.72184 * 9 8 7 11 11 C 1.40715 * 119.74393 * 0.56989 * 10 9 8 12 12 C 1.41395 * 120.24904 * 179.68174 * 11 10 9 13 13 H 1.08009 * 119.99161 * 24.40940 * 12 11 10 14 14 C 1.39942 * 120.00392 * 204.41156 * 12 11 10 15 15 N 1.30820 * 119.99837 * 17.85523 * 14 12 11 16 16 Si 1.86801 * 119.99939 * 197.85391 * 14 12 11 17 17 H 1.48495 * 109.47028 * 60.00143 * 16 14 12 18 18 H 1.48504 * 109.47175 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47256 * 299.99977 * 16 14 12 20 20 C 1.40722 * 119.51081 * 359.70396 * 11 10 9 21 21 C 1.37614 * 119.74177 * 0.02562 * 20 11 10 22 22 C 1.50700 * 109.47019 * 240.00089 * 2 1 3 23 23 O 1.20827 * 119.99955 * 24.99916 * 22 2 1 24 24 O 1.34236 * 120.00178 * 204.99407 * 22 2 1 25 25 H 1.09004 * 109.46617 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46819 * 299.99438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 60.00141 * 1 2 3 28 28 H 1.08995 * 109.47338 * 60.00522 * 3 2 1 29 29 H 1.09002 * 109.47025 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47002 * 300.00047 * 4 3 2 31 31 H 1.08997 * 109.46633 * 59.99845 * 4 3 2 32 32 H 1.00901 * 111.00103 * 183.95565 * 6 2 1 33 33 H 1.09000 * 109.47328 * 300.00194 * 7 6 2 34 34 H 1.09002 * 109.46999 * 60.00279 * 7 6 2 35 35 H 1.08003 * 119.87116 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.12883 * 180.27521 * 10 9 8 37 37 H 0.97006 * 119.99924 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.12912 * 179.97438 * 20 11 10 39 39 H 1.08007 * 119.87383 * 180.02562 * 21 20 11 40 40 H 0.96698 * 116.99941 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2493 5 9 1.9958 3.4829 -1.2489 6 7 2.0197 -0.6925 1.1994 7 6 1.5487 -2.0835 1.2333 8 6 2.0694 -2.7600 2.4752 9 6 3.2874 -3.4211 2.4392 10 6 3.7753 -4.0375 3.5688 11 6 3.0272 -4.0051 4.7601 12 6 3.5152 -4.6406 5.9252 13 1 4.5760 -4.8024 6.0478 14 6 2.6238 -5.0599 6.9191 15 7 1.3517 -5.1917 6.6437 16 14 3.2504 -5.4315 8.6393 17 1 3.8783 -4.2135 9.2112 18 1 2.1154 -5.8530 9.4992 19 1 4.2553 -6.5230 8.5750 20 6 1.7894 -3.3360 4.7835 21 6 1.3238 -2.7218 3.6434 22 6 2.0323 -0.7104 -1.2305 23 8 1.3395 -0.7703 -2.2186 24 8 3.2494 -1.2766 -1.2288 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.8932 1.6500 -2.1392 31 1 0.4400 2.1637 -1.2492 32 1 3.0262 -0.6500 1.2558 33 1 0.4588 -2.0980 1.2419 34 1 1.9121 -2.6118 0.3519 35 1 3.8574 -3.4491 1.5223 36 1 4.7265 -4.5482 3.5397 37 1 0.7338 -5.4820 7.3328 38 1 1.2068 -3.3053 5.6923 39 1 0.3743 -2.2073 3.6590 40 1 3.5278 -1.7212 -2.0411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592505249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:03 Heat of formation + Delta-G solvation = -134.728659 kcal Electronic energy + Delta-G solvation = -23508.006098 eV Core-core repulsion = 19815.091508 eV Total energy + Delta-G solvation = -3692.914590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.82271 -40.91792 -37.94000 -36.97593 -36.28188 -34.08386 -32.65182 -30.02923 -29.28738 -28.50227 -26.75071 -24.90911 -23.75842 -22.72045 -20.99186 -20.00719 -19.85820 -18.09828 -17.32355 -17.24827 -16.71281 -16.43609 -15.45712 -15.38457 -15.26536 -14.71580 -14.37512 -14.05542 -13.74100 -13.73372 -13.34647 -12.75129 -12.58888 -12.42703 -12.20039 -12.05598 -11.93517 -11.72368 -11.63977 -11.40864 -11.31654 -11.11425 -10.95525 -10.91738 -10.65602 -10.47455 -10.37712 -9.65071 -9.39478 -9.16104 -8.43077 -7.47102 -7.35021 -6.79291 -4.38123 1.98384 2.67731 2.83206 3.04498 3.06317 3.07119 3.16567 3.90494 3.94573 4.38177 4.42592 4.56051 4.67784 4.77271 4.79822 5.12699 5.27838 5.50039 5.55984 5.63078 5.68487 5.73364 5.77518 5.86818 5.98280 6.21228 6.31173 6.33821 6.40892 6.92299 7.02637 7.04352 7.26702 7.31295 7.46206 7.59386 7.70249 7.84387 8.03072 8.10939 8.27670 8.61929 8.86859 8.95210 10.15082 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.003036 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.181537 B = 9221.047077 C = 9446.023689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.131 3.869 3 C -0.140 4.140 4 C 0.057 3.943 5 F -0.216 7.216 6 N -0.655 5.655 7 C 0.119 3.881 8 C -0.217 4.217 9 C -0.081 4.081 10 C -0.228 4.228 11 C 0.114 3.886 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.791 5.791 16 Si 0.908 3.092 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.168 4.168 21 C -0.077 4.077 22 C 0.450 3.550 23 O -0.519 6.519 24 O -0.511 6.511 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.354 0.646 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.281 0.719 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 9.285 -11.045 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.037 3.963 3 C -0.178 4.178 4 C 0.002 3.998 5 F -0.197 7.197 6 N -0.288 5.288 7 C -0.008 4.008 8 C -0.219 4.219 9 C -0.099 4.099 10 C -0.248 4.248 11 C 0.112 3.888 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.188 4.188 21 C -0.096 4.096 22 C 0.290 3.710 23 O -0.406 6.406 24 O -0.323 6.323 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.639 9.631 -10.452 14.306 hybrid contribution 1.045 -1.065 -0.504 1.575 sum -0.594 8.566 -10.955 13.919 Atomic orbital electron populations 1.21937 0.90411 1.03980 1.03313 1.21056 0.97442 0.93450 0.84309 1.22194 1.02851 0.92859 0.99896 1.22136 1.00570 0.78092 0.99033 1.92771 1.90869 1.38252 1.97813 1.60848 1.17708 1.17017 1.33247 1.20726 0.99174 0.85157 0.95752 1.18757 0.98571 1.09848 0.94688 1.20366 0.94923 0.98092 0.96565 1.20925 1.01893 1.08560 0.93428 1.17630 0.91258 0.88474 0.91449 1.19589 0.94719 1.33647 1.01270 0.90496 1.25912 0.94467 0.93104 1.00666 1.69818 1.03862 1.33104 1.34851 0.86375 0.79304 0.79777 0.81321 1.18775 1.20328 1.19027 1.21311 0.98871 1.01020 0.97575 1.20488 0.97552 0.98501 0.93057 1.25302 0.78711 0.75978 0.91001 1.90685 1.56898 1.57046 1.35943 1.84602 1.34964 1.67022 1.45685 0.91311 0.89673 0.91086 0.87618 0.89688 0.91078 0.89758 0.82565 0.91289 0.95923 0.89780 0.89150 0.90782 0.86496 0.89437 0.73450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.42 37.16 0.28 -1.24 16 2 C 0.13 1.53 0.71 -132.76 -0.09 1.43 16 3 C -0.14 -1.39 4.98 -26.73 -0.13 -1.52 16 4 C 0.06 0.55 6.89 37.16 0.26 0.80 16 5 F -0.22 -2.47 17.36 2.25 0.04 -2.43 16 6 N -0.66 -9.22 5.96 -102.40 -0.61 -9.83 16 7 C 0.12 1.95 5.07 -4.98 -0.03 1.93 16 8 C -0.22 -4.46 5.42 -104.33 -0.56 -5.03 16 9 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 10 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 11 C 0.11 2.99 5.58 -106.82 -0.60 2.40 16 12 C -0.46 -12.11 9.05 -37.74 -0.34 -12.45 16 13 H 0.08 1.93 7.91 -52.48 -0.42 1.52 16 14 C 0.08 1.89 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.14 10.95 55.55 0.61 -19.53 16 16 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 21 C -0.08 -1.73 9.67 -39.66 -0.38 -2.12 16 22 C 0.45 5.53 4.90 36.01 0.18 5.71 16 23 O -0.52 -7.29 16.22 -18.75 -0.30 -7.59 16 24 O -0.51 -5.52 12.23 -39.27 -0.48 -6.00 16 25 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.69 6.16 -51.93 -0.32 0.37 16 28 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.71 6.82 -51.93 -0.35 0.35 16 31 H 0.08 0.70 6.43 -51.93 -0.33 0.37 16 32 H 0.35 5.07 8.37 -39.29 -0.33 4.74 16 33 H 0.07 1.11 6.24 -51.93 -0.32 0.79 16 34 H 0.02 0.37 6.58 -51.93 -0.34 0.03 16 35 H 0.08 1.60 8.06 -52.48 -0.42 1.17 16 36 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 38 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 39 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.41 2.76 9.10 45.56 0.41 3.17 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -28.67 333.69 -7.70 -36.37 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -4.33 Total: 11.50 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.62 Total: -20.86 kcal Atomic # 7 Polarization: -29.36 SS G_CDS: 0.00 Total: -29.36 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.78 Total: -13.60 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.67 -7.70 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592505249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.359 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds