Wall clock time and date at job start Tue Mar 31 2020 07:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.52999 * 109.46825 * 60.00168 * 3 2 1 5 5 F 1.39906 * 109.46648 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.46909 * 239.99813 * 2 1 3 7 7 C 1.46899 * 111.00405 * 300.00295 * 6 2 1 8 8 C 1.50697 * 109.47036 * 180.02562 * 7 6 2 9 9 C 1.38641 * 119.74626 * 269.72358 * 8 7 6 10 10 C 1.37621 * 120.24268 * 179.72345 * 9 8 7 11 11 C 1.40715 * 119.74648 * 0.57236 * 10 9 8 12 12 C 1.41397 * 120.23880 * 179.68147 * 11 10 9 13 13 H 1.07999 * 119.99482 * 204.40142 * 12 11 10 14 14 C 1.39938 * 120.00681 * 24.40369 * 12 11 10 15 15 N 1.30824 * 119.99967 * 17.85299 * 14 12 11 16 16 Si 1.86805 * 120.00267 * 197.85727 * 14 12 11 17 17 H 1.48491 * 109.46874 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46955 * 120.00006 * 16 14 12 19 19 H 1.48498 * 109.46704 * 239.99815 * 16 14 12 20 20 C 1.40715 * 119.51269 * 359.70414 * 11 10 9 21 21 C 1.37620 * 119.74324 * 0.02562 * 20 11 10 22 22 C 1.50696 * 109.46724 * 120.00221 * 2 1 3 23 23 O 1.20827 * 120.00465 * 334.99521 * 22 2 1 24 24 O 1.34234 * 119.99873 * 155.00055 * 22 2 1 25 25 H 1.08999 * 109.47124 * 59.99753 * 1 2 3 26 26 H 1.08999 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47305 * 300.00291 * 1 2 3 28 28 H 1.08999 * 109.47295 * 300.00141 * 3 2 1 29 29 H 1.08995 * 109.46926 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47534 * 299.99237 * 4 3 2 31 31 H 1.08999 * 109.47590 * 60.00298 * 4 3 2 32 32 H 1.00902 * 110.99726 * 176.04583 * 6 2 1 33 33 H 1.09001 * 109.46994 * 300.00150 * 7 6 2 34 34 H 1.08998 * 109.46963 * 60.00080 * 7 6 2 35 35 H 1.07996 * 119.87642 * 359.97438 * 9 8 7 36 36 H 1.08009 * 120.12020 * 180.27944 * 10 9 8 37 37 H 0.97002 * 120.00453 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.12744 * 179.97438 * 20 11 10 39 39 H 1.07993 * 119.87259 * 180.02562 * 21 20 11 40 40 H 0.96696 * 117.00279 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 9 1.9969 3.4825 1.2495 6 7 2.0196 -0.6925 -1.1994 7 6 1.5486 -2.0835 -1.2334 8 6 2.0702 -2.7603 -2.4747 9 6 1.3230 -2.7267 -3.6421 10 6 1.7923 -3.3364 -4.7832 11 6 3.0296 -4.0060 -4.7586 12 6 3.5185 -4.6418 -5.9231 13 1 4.2217 -5.4571 -5.8383 14 6 3.0913 -4.2147 -7.1854 15 7 2.5344 -3.0391 -7.3243 16 14 3.3160 -5.3232 -8.6721 17 1 3.9669 -6.5898 -8.2512 18 1 1.9906 -5.6225 -9.2712 19 1 4.1696 -4.6382 -9.6757 20 6 3.7766 -4.0386 -3.5665 21 6 3.2905 -3.4171 -2.4390 22 6 2.0322 -0.7105 1.2304 23 8 1.3395 -0.7703 2.2186 24 8 3.2493 -1.2767 1.2287 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.4400 2.1638 1.2493 31 1 1.8934 1.6499 2.1393 32 1 3.0261 -0.6501 -1.2558 33 1 1.9120 -2.6118 -0.3520 34 1 0.4587 -2.0979 -1.2420 35 1 0.3712 -2.2166 -3.6571 36 1 1.2106 -3.3051 -5.6927 37 1 2.2379 -2.7431 -8.1992 38 1 4.7274 -4.5500 -3.5364 39 1 3.8622 -3.4405 -1.5231 40 1 3.5280 -1.7208 2.0411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592505254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:05 Heat of formation + Delta-G solvation = -134.545920 kcal Electronic energy + Delta-G solvation = -23537.164435 eV Core-core repulsion = 19844.257769 eV Total energy + Delta-G solvation = -3692.906666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.80337 -40.90971 -37.93539 -36.96755 -36.27495 -34.07889 -32.64211 -30.02375 -29.28697 -28.49044 -26.74513 -24.90145 -23.74674 -22.71199 -20.99181 -20.00029 -19.85250 -18.09093 -17.32368 -17.23462 -16.69931 -16.42082 -15.44256 -15.37782 -15.26096 -14.70183 -14.35592 -14.05147 -13.74122 -13.72492 -13.34221 -12.73094 -12.59066 -12.41827 -12.19134 -12.05222 -11.93450 -11.71661 -11.63364 -11.49024 -11.23198 -11.09779 -10.99226 -10.84093 -10.63145 -10.47325 -10.40009 -9.63767 -9.40121 -9.15367 -8.41748 -7.47118 -7.34468 -6.78774 -4.37961 1.99037 2.66873 2.83375 3.05064 3.06645 3.10758 3.14361 3.90764 3.96117 4.39756 4.44099 4.56749 4.69136 4.78713 4.81242 5.13747 5.29388 5.51817 5.57142 5.63934 5.68072 5.74254 5.78372 5.88432 5.98718 6.21696 6.31356 6.33419 6.40337 6.92821 7.04310 7.04684 7.26807 7.31652 7.47815 7.59532 7.71038 7.84533 8.03545 8.10912 8.27775 8.62352 8.87172 8.95292 10.15329 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.003121 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.579073 B = 8970.088708 C = 9367.131181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.131 3.869 3 C -0.140 4.140 4 C 0.057 3.943 5 F -0.216 7.216 6 N -0.655 5.655 7 C 0.119 3.881 8 C -0.217 4.217 9 C -0.077 4.077 10 C -0.168 4.168 11 C 0.114 3.886 12 C -0.462 4.462 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.789 5.789 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.228 4.228 21 C -0.081 4.081 22 C 0.450 3.550 23 O -0.519 6.519 24 O -0.511 6.511 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.355 0.645 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 6.333 11.974 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.037 3.963 3 C -0.178 4.178 4 C 0.002 3.998 5 F -0.197 7.197 6 N -0.288 5.288 7 C -0.008 4.008 8 C -0.219 4.219 9 C -0.096 4.096 10 C -0.188 4.188 11 C 0.111 3.889 12 C -0.491 4.491 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.414 5.414 16 Si 0.731 3.269 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.248 4.248 21 C -0.100 4.100 22 C 0.290 3.710 23 O -0.406 6.406 24 O -0.322 6.322 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.122 6.930 11.302 13.620 hybrid contribution 0.991 -1.129 0.520 1.590 sum -2.131 5.801 11.822 13.340 Atomic orbital electron populations 1.21936 0.90429 1.03927 1.03323 1.21058 0.97427 0.93478 0.84296 1.22197 1.02874 0.92856 0.99907 1.22139 1.00541 0.78111 0.99022 1.92773 1.90832 1.38283 1.97813 1.60841 1.17788 1.16972 1.33201 1.20730 0.99117 0.85213 0.95713 1.18768 0.98889 1.09678 0.94535 1.20492 0.97758 0.98551 0.92832 1.21310 0.96918 1.03455 0.97076 1.17637 0.90270 0.89167 0.91813 1.19644 1.23511 1.15819 0.90160 0.90454 1.25914 0.92968 0.94476 1.00846 1.69838 1.29697 1.16139 1.25752 0.86292 0.78938 0.81170 0.80520 1.18423 1.19684 1.19983 1.20933 1.00229 1.08947 0.94670 1.20364 0.94880 0.98194 0.96530 1.25315 0.78699 0.75954 0.91004 1.90682 1.56921 1.57074 1.35944 1.84606 1.34973 1.67037 1.45632 0.89662 0.91349 0.91097 0.87580 0.89677 0.89764 0.91103 0.82493 0.95957 0.91326 0.89438 0.86496 0.90886 0.89152 0.89780 0.73479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.42 37.16 0.28 -1.25 16 2 C 0.13 1.56 0.71 -132.76 -0.09 1.46 16 3 C -0.14 -1.45 4.98 -26.73 -0.13 -1.58 16 4 C 0.06 0.56 6.89 37.16 0.26 0.82 16 5 F -0.22 -2.53 17.36 2.25 0.04 -2.49 16 6 N -0.66 -9.47 5.96 -102.40 -0.61 -10.08 16 7 C 0.12 1.96 5.07 -4.98 -0.03 1.94 16 8 C -0.22 -4.46 5.41 -104.33 -0.56 -5.03 16 9 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 10 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 11 C 0.11 2.97 5.58 -106.82 -0.60 2.37 16 12 C -0.46 -12.07 9.05 -37.74 -0.34 -12.42 16 13 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 14 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 15 N -0.79 -20.08 10.95 55.55 0.61 -19.47 16 16 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 17 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C -0.23 -5.46 9.80 -38.87 -0.38 -5.84 16 21 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 22 C 0.45 5.58 4.90 36.00 0.18 5.76 16 23 O -0.52 -7.31 16.22 -18.75 -0.30 -7.61 16 24 O -0.51 -5.58 12.23 -39.27 -0.48 -6.06 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 27 H 0.07 0.69 6.16 -51.92 -0.32 0.37 16 28 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.72 6.43 -51.93 -0.33 0.38 16 31 H 0.07 0.72 6.83 -51.93 -0.35 0.36 16 32 H 0.35 5.28 8.37 -39.29 -0.33 4.95 16 33 H 0.02 0.36 6.58 -51.93 -0.34 0.02 16 34 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 3.08 6.16 -52.48 -0.32 2.76 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 38 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.08 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.41 2.78 9.10 45.56 0.41 3.19 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -28.72 333.69 -7.70 -36.42 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.33 Total: 11.76 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -2.62 Total: -20.82 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: 0.00 Total: -29.55 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.78 Total: -13.67 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.72 -7.70 -36.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592505254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.123 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds