Wall clock time and date at job start Tue Mar 31 2020 07:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 C 1.52999 * 109.46825 * 60.00168 * 3 2 1 5 5 F 1.39906 * 109.46648 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.46909 * 239.99813 * 2 1 3 7 7 C 1.46899 * 111.00405 * 300.00295 * 6 2 1 8 8 C 1.50697 * 109.47036 * 180.02562 * 7 6 2 9 9 C 1.38641 * 119.74626 * 269.72358 * 8 7 6 10 10 C 1.37621 * 120.24268 * 179.72345 * 9 8 7 11 11 C 1.40715 * 119.74648 * 0.57236 * 10 9 8 12 12 C 1.41397 * 120.23880 * 179.68147 * 11 10 9 13 13 H 1.07999 * 119.99482 * 204.40142 * 12 11 10 14 14 C 1.39938 * 120.00681 * 24.40369 * 12 11 10 15 15 N 1.30824 * 119.99967 * 17.85299 * 14 12 11 16 16 Si 1.86805 * 120.00267 * 197.85727 * 14 12 11 17 17 H 1.48491 * 109.46874 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46955 * 120.00006 * 16 14 12 19 19 H 1.48498 * 109.46704 * 239.99815 * 16 14 12 20 20 C 1.40715 * 119.51269 * 359.70414 * 11 10 9 21 21 C 1.37620 * 119.74324 * 0.02562 * 20 11 10 22 22 C 1.50696 * 109.46724 * 120.00221 * 2 1 3 23 23 O 1.20827 * 120.00465 * 334.99521 * 22 2 1 24 24 O 1.34234 * 119.99873 * 155.00055 * 22 2 1 25 25 H 1.08999 * 109.47124 * 59.99753 * 1 2 3 26 26 H 1.08999 * 109.47470 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47305 * 300.00291 * 1 2 3 28 28 H 1.08999 * 109.47295 * 300.00141 * 3 2 1 29 29 H 1.08995 * 109.46926 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47534 * 299.99237 * 4 3 2 31 31 H 1.08999 * 109.47590 * 60.00298 * 4 3 2 32 32 H 1.00902 * 110.99726 * 176.04583 * 6 2 1 33 33 H 1.09001 * 109.46994 * 300.00150 * 7 6 2 34 34 H 1.08998 * 109.46963 * 60.00080 * 7 6 2 35 35 H 1.07996 * 119.87642 * 359.97438 * 9 8 7 36 36 H 1.08009 * 120.12020 * 180.27944 * 10 9 8 37 37 H 0.97002 * 120.00453 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.12744 * 179.97438 * 20 11 10 39 39 H 1.07993 * 119.87259 * 180.02562 * 21 20 11 40 40 H 0.96696 * 117.00279 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 9 1.9969 3.4825 1.2495 6 7 2.0196 -0.6925 -1.1994 7 6 1.5486 -2.0835 -1.2334 8 6 2.0702 -2.7603 -2.4747 9 6 1.3230 -2.7267 -3.6421 10 6 1.7923 -3.3364 -4.7832 11 6 3.0296 -4.0060 -4.7586 12 6 3.5185 -4.6418 -5.9231 13 1 4.2217 -5.4571 -5.8383 14 6 3.0913 -4.2147 -7.1854 15 7 2.5344 -3.0391 -7.3243 16 14 3.3160 -5.3232 -8.6721 17 1 3.9669 -6.5898 -8.2512 18 1 1.9906 -5.6225 -9.2712 19 1 4.1696 -4.6382 -9.6757 20 6 3.7766 -4.0386 -3.5665 21 6 3.2905 -3.4171 -2.4390 22 6 2.0322 -0.7105 1.2304 23 8 1.3395 -0.7703 2.2186 24 8 3.2493 -1.2767 1.2287 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.4400 2.1638 1.2493 31 1 1.8934 1.6499 2.1393 32 1 3.0261 -0.6501 -1.2558 33 1 1.9120 -2.6118 -0.3520 34 1 0.4587 -2.0979 -1.2420 35 1 0.3712 -2.2166 -3.6571 36 1 1.2106 -3.3051 -5.6927 37 1 2.2379 -2.7431 -8.1992 38 1 4.7274 -4.5500 -3.5364 39 1 3.8622 -3.4405 -1.5231 40 1 3.5280 -1.7208 2.0411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592505254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:05 Heat of formation + Delta-G solvation = -151.956468 kcal Electronic energy + Delta-G solvation = -23537.919413 eV Core-core repulsion = 19844.257769 eV Total energy + Delta-G solvation = -3693.661644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.65665 -41.87566 -39.55596 -38.12277 -37.25333 -35.75526 -33.97623 -31.59722 -31.07039 -29.49090 -28.20036 -26.16347 -24.87237 -23.91637 -22.81428 -21.61679 -20.84141 -19.19199 -19.04626 -18.24643 -17.63512 -17.27062 -17.12479 -16.52727 -16.27472 -15.87019 -15.61436 -15.56036 -15.20957 -14.86040 -14.72164 -14.21322 -13.78497 -13.63763 -13.54245 -13.36963 -13.25081 -12.99676 -12.78457 -12.71724 -12.63362 -12.41055 -12.36105 -12.02395 -11.95964 -11.81152 -11.52632 -11.37698 -11.19761 -10.97602 -9.59475 -9.30873 -9.16607 -8.61438 -6.30962 0.94669 1.05132 1.19695 1.39353 1.50132 1.54222 1.96149 2.22204 2.67378 3.03061 3.50021 3.58566 3.76468 3.85925 3.92491 4.04769 4.25594 4.27486 4.35593 4.47609 4.59642 4.62402 4.70656 4.73968 4.81355 4.89937 5.06351 5.09645 5.18462 5.20604 5.42088 5.49053 5.49867 5.74851 5.84413 6.02438 6.14228 6.24154 6.36022 6.42951 6.74829 6.87007 6.97644 7.07711 8.35195 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.003121 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.579073 B = 8970.088708 C = 9367.131181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.134 3.866 3 C -0.135 4.135 4 C 0.060 3.940 5 F -0.226 7.226 6 N -0.659 5.659 7 C 0.128 3.872 8 C -0.200 4.200 9 C -0.082 4.082 10 C -0.192 4.192 11 C 0.081 3.919 12 C -0.503 4.503 13 H 0.072 0.928 14 C 0.036 3.964 15 N -0.823 5.823 16 Si 0.980 3.020 17 H -0.260 1.260 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.245 4.245 21 C -0.080 4.080 22 C 0.453 3.547 23 O -0.537 6.537 24 O -0.513 6.513 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.353 0.647 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.287 0.713 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 6.853 13.100 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.040 3.960 3 C -0.173 4.173 4 C 0.004 3.996 5 F -0.207 7.207 6 N -0.291 5.291 7 C 0.000 4.000 8 C -0.202 4.202 9 C -0.101 4.101 10 C -0.211 4.211 11 C 0.078 3.922 12 C -0.532 4.532 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.449 5.449 16 Si 0.801 3.199 17 H -0.183 1.183 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.264 4.264 21 C -0.099 4.099 22 C 0.294 3.706 23 O -0.426 6.426 24 O -0.327 6.327 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.173 0.827 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.395 7.452 12.454 14.905 hybrid contribution 1.084 -1.218 0.367 1.672 sum -2.311 6.234 12.821 14.442 Atomic orbital electron populations 1.21983 0.89675 1.03697 1.04415 1.21100 0.97975 0.93827 0.83062 1.22151 1.02935 0.91863 1.00390 1.22182 1.01459 0.77345 0.98578 1.92755 1.91057 1.39114 1.97821 1.60707 1.17727 1.15645 1.35053 1.20591 0.99589 0.86159 0.93627 1.19183 0.97813 1.07841 0.95358 1.20740 0.98676 0.98021 0.92655 1.21270 0.97108 1.05189 0.97577 1.17968 0.91080 0.90249 0.92861 1.19861 1.25093 1.16783 0.91473 0.90970 1.26718 0.92285 0.95579 1.03311 1.69885 1.30636 1.17502 1.26863 0.85199 0.79126 0.78960 0.76655 1.18340 1.18881 1.19077 1.21136 1.00497 1.09675 0.95104 1.20673 0.95336 0.97118 0.96781 1.25262 0.78862 0.75702 0.90748 1.90684 1.57504 1.57801 1.36574 1.84563 1.34215 1.66907 1.46987 0.88927 0.92215 0.89739 0.87176 0.89627 0.88152 0.91241 0.82680 0.95133 0.90377 0.87644 0.88410 0.90200 0.88870 0.86828 0.71387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.42 71.98 0.53 -2.17 16 2 C 0.13 2.82 0.71 2.78 0.00 2.82 16 3 C -0.14 -2.46 4.98 30.59 0.15 -2.31 16 4 C 0.06 1.03 6.89 71.98 0.50 1.53 16 5 F -0.23 -4.87 17.36 44.97 0.78 -4.09 16 6 N -0.66 -17.37 5.96 -477.89 -2.85 -20.22 16 7 C 0.13 3.86 5.07 85.56 0.43 4.30 16 8 C -0.20 -7.92 5.41 -19.67 -0.11 -8.03 16 9 C -0.08 -3.66 9.67 22.22 0.21 -3.45 16 10 C -0.19 -9.99 8.70 22.73 0.20 -9.79 16 11 C 0.08 4.35 5.58 -21.29 -0.12 4.23 16 12 C -0.50 -27.27 9.05 23.46 0.21 -27.06 16 13 H 0.07 3.81 7.91 -2.91 -0.02 3.78 16 14 C 0.04 1.82 5.14 85.25 0.44 2.26 16 15 N -0.82 -43.09 10.95 21.82 0.24 -42.85 16 16 Si 0.98 38.27 29.60 68.60 2.03 40.30 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 20 C -0.24 -11.83 9.80 22.73 0.22 -11.60 16 21 C -0.08 -3.34 9.67 22.22 0.21 -3.12 16 22 C 0.45 10.02 4.90 71.23 0.35 10.37 16 23 O -0.54 -13.75 16.22 21.96 0.36 -13.40 16 24 O -0.51 -9.74 12.23 -51.45 -0.63 -10.37 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.26 6.40 -2.39 -0.02 1.25 16 27 H 0.08 1.40 6.16 -2.38 -0.01 1.39 16 28 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 1.42 6.43 -2.39 -0.02 1.40 16 31 H 0.07 1.24 6.83 -2.39 -0.02 1.23 16 32 H 0.35 9.62 8.37 -89.69 -0.75 8.87 16 33 H 0.03 0.89 6.58 -2.39 -0.02 0.88 16 34 H 0.08 2.26 6.24 -2.39 -0.01 2.24 16 35 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.10 5.38 6.16 -2.91 -0.02 5.36 16 37 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 38 H 0.09 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.11 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.42 4.59 9.10 -74.06 -0.67 3.91 16 Total: -1.00 -62.51 333.69 2.84 -59.67 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.34 Total: 32.98 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.24 Total: -42.04 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -2.61 Total: -63.07 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.27 Total: -23.76 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -62.51 2.84 -59.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592505254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.283 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds