Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47407 * 2 1 4 4 C 1.46906 * 110.99573 * 60.00340 * 3 2 1 5 5 C 1.52998 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47077 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47047 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00136 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00112 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00300 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47104 * 60.00043 * 11 9 7 13 13 H 1.48496 * 109.47638 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47155 * 300.00196 * 11 9 7 15 15 C 1.50695 * 109.47393 * 120.00524 * 2 1 3 16 16 O 1.20822 * 119.99880 * 24.99842 * 15 2 1 17 17 O 1.34224 * 120.00138 * 204.99907 * 15 2 1 18 18 C 1.50707 * 109.46654 * 240.00683 * 2 1 3 19 19 C 1.38239 * 119.97397 * 119.72792 * 18 2 1 20 20 C 1.38199 * 120.02444 * 179.72186 * 19 18 2 21 21 C 1.38463 * 119.97180 * 0.52444 * 20 19 18 22 22 F 1.35101 * 120.02656 * 179.72665 * 21 20 19 23 23 C 1.38456 * 119.95122 * 359.74705 * 21 20 19 24 24 C 1.38199 * 119.97130 * 359.97438 * 23 21 20 25 25 H 1.09003 * 109.47841 * 59.99225 * 1 2 3 26 26 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46892 * 299.99943 * 1 2 3 28 28 H 1.00896 * 111.00219 * 183.95980 * 3 2 1 29 29 H 1.09002 * 109.46991 * 299.99841 * 4 3 2 30 30 H 1.09000 * 109.47202 * 60.00133 * 4 3 2 31 31 H 1.08995 * 109.47213 * 300.00679 * 5 4 3 32 32 H 1.09008 * 109.47264 * 60.00068 * 5 4 3 33 33 H 1.08993 * 109.47277 * 299.99937 * 6 5 4 34 34 H 1.09000 * 109.47041 * 60.00238 * 6 5 4 35 35 H 0.96998 * 120.00461 * 180.02562 * 10 9 7 36 36 H 0.96705 * 117.00026 * 180.02562 * 17 15 2 37 37 H 1.08004 * 119.98981 * 359.97438 * 19 18 2 38 38 H 1.07998 * 120.01782 * 180.29520 * 20 19 18 39 39 H 1.07999 * 120.01987 * 179.97438 * 23 21 20 40 40 H 1.08009 * 119.98818 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1098 1.1878 5 6 2.0783 3.5448 1.1529 6 6 1.5873 4.2999 2.3896 7 6 2.1084 5.7135 2.3548 8 1 2.7275 6.0407 1.5327 9 6 1.7948 6.5891 3.3727 10 7 1.0413 6.1905 4.3741 11 14 2.4414 8.3411 3.3300 12 1 1.9467 9.0216 2.1063 13 1 1.9657 9.0737 4.5309 14 1 3.9262 8.3206 3.3191 15 6 2.0323 -0.7105 1.2303 16 8 1.3396 -1.5363 1.7762 17 8 3.2493 -0.4259 1.7198 18 6 2.0322 -0.7103 -1.2306 19 6 2.8222 -0.0363 -2.1431 20 6 3.2881 -0.6883 -3.2690 21 6 2.9543 -2.0140 -3.4885 22 9 3.4045 -2.6508 -4.5916 23 6 2.1583 -2.6865 -2.5768 24 6 1.6984 -2.0340 -1.4486 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0262 1.4126 -0.0650 29 1 0.4588 2.1245 1.1961 30 1 1.9122 1.6106 2.0860 31 1 3.1681 3.5298 1.1447 32 1 1.7152 4.0444 0.2546 33 1 0.4975 4.3149 2.3972 34 1 1.9501 3.8005 3.2880 35 1 0.8204 6.8066 5.0900 36 1 3.5281 -0.9076 2.5106 37 1 3.0789 0.9991 -1.9739 38 1 3.9092 -0.1629 -3.9793 39 1 1.8969 -3.7204 -2.7471 40 1 1.0770 -2.5582 -0.7374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593265427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = -119.819020 kcal Electronic energy + Delta-G solvation = -23437.351068 eV Core-core repulsion = 19745.083008 eV Total energy + Delta-G solvation = -3692.268060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14974 -41.12612 -39.19602 -36.87137 -36.31457 -34.07978 -32.34651 -31.49508 -30.20520 -28.93226 -26.48050 -24.90939 -23.48434 -22.84926 -22.23304 -20.27568 -20.04779 -18.17153 -18.02576 -17.25346 -16.77819 -16.43234 -16.11638 -15.83947 -15.48299 -14.89461 -14.54047 -14.31735 -14.17041 -13.85239 -13.72433 -13.26598 -13.18887 -12.60595 -12.44469 -12.29705 -12.12042 -11.86629 -11.67283 -11.56883 -11.49012 -11.19796 -10.94163 -10.71713 -10.57023 -10.55478 -9.74191 -9.39565 -9.38772 -9.10798 -8.91424 -8.57035 -8.35621 -6.00860 -4.03327 0.76448 0.95677 2.02861 2.78951 3.31731 3.32981 3.37446 3.39769 3.90064 3.97065 4.35354 4.46067 4.48492 4.61818 4.71918 5.01232 5.01829 5.20674 5.35012 5.49493 5.53732 5.64184 5.67030 5.73256 5.75780 5.83535 5.96961 6.00231 6.15921 6.23754 6.34778 6.55903 6.60013 6.64002 7.01376 7.07688 7.30989 7.65555 7.72538 7.79533 7.98759 8.41292 9.03598 9.60837 11.10545 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.003088 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.927671 B = 9066.485284 C = 9784.368418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.174 3.826 3 N -0.664 5.664 4 C 0.050 3.950 5 C -0.104 4.104 6 C 0.023 3.977 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.457 3.543 16 O -0.513 6.513 17 O -0.511 6.511 18 C -0.091 4.091 19 C -0.059 4.059 20 C -0.154 4.154 21 C 0.100 3.900 22 F -0.141 7.141 23 C -0.155 4.155 24 C -0.081 4.081 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.352 0.648 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.409 0.591 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -17.970 -12.946 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 N -0.297 5.297 4 C -0.077 4.077 5 C -0.142 4.142 6 C -0.015 4.015 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.297 3.703 16 O -0.399 6.399 17 O -0.323 6.323 18 C -0.091 4.091 19 C -0.077 4.077 20 C -0.173 4.173 21 C 0.081 3.919 22 F -0.120 7.120 23 C -0.173 4.173 24 C -0.100 4.100 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.172 0.828 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.268 0.732 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.116 -17.708 -13.408 22.312 hybrid contribution 1.148 0.091 1.203 1.666 sum 3.264 -17.617 -12.204 21.678 Atomic orbital electron populations 1.21877 0.89346 1.03350 1.04328 1.19786 0.97394 0.88263 0.86525 1.60829 1.17290 1.08590 1.42947 1.22359 1.00820 0.95998 0.88570 1.21608 0.99531 0.91598 1.01504 1.19049 0.96519 0.94398 0.91503 1.21198 1.31451 0.96314 1.06874 0.92657 1.25027 0.95218 0.98716 0.95519 1.69951 1.37284 1.35705 1.10642 0.86652 0.79257 0.84668 0.77385 1.20193 1.21335 1.20259 1.24861 0.78836 0.80402 0.86214 1.90686 1.56861 1.32743 1.59645 1.84554 1.34799 1.65721 1.47221 1.19445 0.99818 0.93951 0.95912 1.21026 0.93976 1.00888 0.91771 1.21211 1.03033 0.93145 0.99894 1.17807 0.97910 0.91516 0.84688 1.91502 1.87475 1.81994 1.50982 1.21060 1.00200 1.01150 0.94928 1.20943 0.98459 0.93752 0.96802 0.89736 0.90936 0.90877 0.82796 0.90604 0.95139 0.93337 0.92261 0.96564 0.96834 0.92946 0.73162 0.83164 0.84318 0.84579 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 7.58 37.15 0.28 -1.24 16 2 C 0.17 2.07 0.76 -133.91 -0.10 1.97 16 3 N -0.66 -8.54 4.98 -102.32 -0.51 -9.05 16 4 C 0.05 0.81 4.95 -3.82 -0.02 0.79 16 5 C -0.10 -2.03 5.41 -26.73 -0.14 -2.18 16 6 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 11 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.46 5.94 5.53 36.00 0.20 6.14 16 16 O -0.51 -7.66 16.85 -18.75 -0.32 -7.98 16 17 O -0.51 -5.81 12.23 -39.24 -0.48 -6.29 16 18 C -0.09 -0.96 4.76 -104.62 -0.50 -1.46 16 19 C -0.06 -0.57 9.14 -39.60 -0.36 -0.94 16 20 C -0.15 -1.42 10.03 -39.51 -0.40 -1.82 16 21 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 22 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 23 C -0.15 -1.42 10.03 -39.52 -0.40 -1.82 16 24 C -0.08 -0.80 8.81 -39.59 -0.35 -1.15 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 27 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 28 H 0.35 4.27 7.22 -39.29 -0.28 3.99 16 29 H 0.08 1.24 6.30 -51.93 -0.33 0.91 16 30 H 0.03 0.51 6.64 -51.93 -0.34 0.17 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.41 3.07 9.10 45.56 0.41 3.49 16 37 H 0.15 1.39 6.41 -52.48 -0.34 1.05 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.27 7.57 -52.48 -0.40 0.87 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -31.91 338.96 -7.54 -39.45 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.48 Total: 3.71 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.62 Total: -13.90 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.23 Total: -35.15 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.80 Total: -14.27 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.91 -7.54 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593265427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.365 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds