Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47407 * 2 1 4 4 C 1.46906 * 110.99573 * 60.00340 * 3 2 1 5 5 C 1.52998 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47077 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47047 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00136 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00112 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00300 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47104 * 60.00043 * 11 9 7 13 13 H 1.48496 * 109.47638 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47155 * 300.00196 * 11 9 7 15 15 C 1.50695 * 109.47393 * 120.00524 * 2 1 3 16 16 O 1.20822 * 119.99880 * 24.99842 * 15 2 1 17 17 O 1.34224 * 120.00138 * 204.99907 * 15 2 1 18 18 C 1.50707 * 109.46654 * 240.00683 * 2 1 3 19 19 C 1.38239 * 119.97397 * 119.72792 * 18 2 1 20 20 C 1.38199 * 120.02444 * 179.72186 * 19 18 2 21 21 C 1.38463 * 119.97180 * 0.52444 * 20 19 18 22 22 F 1.35101 * 120.02656 * 179.72665 * 21 20 19 23 23 C 1.38456 * 119.95122 * 359.74705 * 21 20 19 24 24 C 1.38199 * 119.97130 * 359.97438 * 23 21 20 25 25 H 1.09003 * 109.47841 * 59.99225 * 1 2 3 26 26 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46892 * 299.99943 * 1 2 3 28 28 H 1.00896 * 111.00219 * 183.95980 * 3 2 1 29 29 H 1.09002 * 109.46991 * 299.99841 * 4 3 2 30 30 H 1.09000 * 109.47202 * 60.00133 * 4 3 2 31 31 H 1.08995 * 109.47213 * 300.00679 * 5 4 3 32 32 H 1.09008 * 109.47264 * 60.00068 * 5 4 3 33 33 H 1.08993 * 109.47277 * 299.99937 * 6 5 4 34 34 H 1.09000 * 109.47041 * 60.00238 * 6 5 4 35 35 H 0.96998 * 120.00461 * 180.02562 * 10 9 7 36 36 H 0.96705 * 117.00026 * 180.02562 * 17 15 2 37 37 H 1.08004 * 119.98981 * 359.97438 * 19 18 2 38 38 H 1.07998 * 120.01782 * 180.29520 * 20 19 18 39 39 H 1.07999 * 120.01987 * 179.97438 * 23 21 20 40 40 H 1.08009 * 119.98818 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1098 1.1878 5 6 2.0783 3.5448 1.1529 6 6 1.5873 4.2999 2.3896 7 6 2.1084 5.7135 2.3548 8 1 2.7275 6.0407 1.5327 9 6 1.7948 6.5891 3.3727 10 7 1.0413 6.1905 4.3741 11 14 2.4414 8.3411 3.3300 12 1 1.9467 9.0216 2.1063 13 1 1.9657 9.0737 4.5309 14 1 3.9262 8.3206 3.3191 15 6 2.0323 -0.7105 1.2303 16 8 1.3396 -1.5363 1.7762 17 8 3.2493 -0.4259 1.7198 18 6 2.0322 -0.7103 -1.2306 19 6 2.8222 -0.0363 -2.1431 20 6 3.2881 -0.6883 -3.2690 21 6 2.9543 -2.0140 -3.4885 22 9 3.4045 -2.6508 -4.5916 23 6 2.1583 -2.6865 -2.5768 24 6 1.6984 -2.0340 -1.4486 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0262 1.4126 -0.0650 29 1 0.4588 2.1245 1.1961 30 1 1.9122 1.6106 2.0860 31 1 3.1681 3.5298 1.1447 32 1 1.7152 4.0444 0.2546 33 1 0.4975 4.3149 2.3972 34 1 1.9501 3.8005 3.2880 35 1 0.8204 6.8066 5.0900 36 1 3.5281 -0.9076 2.5106 37 1 3.0789 0.9991 -1.9739 38 1 3.9092 -0.1629 -3.9793 39 1 1.8969 -3.7204 -2.7471 40 1 1.0770 -2.5582 -0.7374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593265427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = -139.525611 kcal Electronic energy + Delta-G solvation = -23438.205610 eV Core-core repulsion = 19745.083008 eV Total energy + Delta-G solvation = -3693.122602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.91792 -42.09730 -40.03196 -37.99456 -37.30879 -35.81354 -34.00131 -32.31515 -31.51965 -29.88669 -28.07567 -26.12773 -24.69112 -23.67382 -23.48887 -21.92467 -20.98781 -19.18086 -18.83661 -18.43703 -18.23450 -17.64111 -17.15072 -16.63720 -16.58381 -16.49151 -15.80311 -15.52814 -15.25841 -14.78280 -14.57229 -14.44901 -14.12224 -14.03887 -13.71915 -13.49847 -13.27171 -13.20992 -12.98187 -12.73206 -12.65708 -12.59531 -12.36136 -12.20308 -11.97646 -11.86896 -11.42951 -11.35894 -11.12087 -10.52676 -10.10889 -9.77822 -9.61462 -8.18069 -6.28843 -0.00803 0.23793 1.02021 1.42288 1.45101 1.52877 1.89363 2.42671 2.55644 2.85602 3.15567 3.22048 3.45538 3.72904 3.81913 3.94758 4.11179 4.24419 4.29320 4.34380 4.43757 4.59821 4.65739 4.73274 4.91588 4.96069 4.96897 5.05027 5.10483 5.14892 5.21620 5.27100 5.41194 5.45030 5.54914 5.75557 5.78992 5.85393 5.88808 6.22373 6.27956 6.81283 6.88706 7.40605 8.93707 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.003088 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.927671 B = 9066.485284 C = 9784.368418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.177 3.823 3 N -0.652 5.652 4 C 0.064 3.936 5 C -0.089 4.089 6 C 0.025 3.975 7 C -0.541 4.541 8 H 0.063 0.937 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.964 3.036 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.457 3.543 16 O -0.537 6.537 17 O -0.512 6.512 18 C -0.098 4.098 19 C -0.062 4.062 20 C -0.151 4.151 21 C 0.090 3.910 22 F -0.145 7.145 23 C -0.152 4.152 24 C -0.084 4.084 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.359 0.641 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.062 0.938 33 H -0.009 1.009 34 H -0.013 1.013 35 H 0.263 0.737 36 H 0.425 0.575 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -17.882 -14.431 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 N -0.286 5.286 4 C -0.064 4.064 5 C -0.127 4.127 6 C -0.013 4.013 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.200 4.200 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.298 3.702 16 O -0.425 6.425 17 O -0.325 6.325 18 C -0.099 4.099 19 C -0.080 4.080 20 C -0.170 4.170 21 C 0.071 3.929 22 F -0.124 7.124 23 C -0.170 4.170 24 C -0.103 4.103 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.180 0.820 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.009 0.991 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.287 0.713 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.173 -17.632 -14.906 23.305 hybrid contribution 0.846 0.002 1.670 1.872 sum 4.019 -17.629 -13.237 22.409 Atomic orbital electron populations 1.21895 0.89263 1.03849 1.03966 1.19797 0.97529 0.87402 0.86979 1.60720 1.17804 1.09242 1.40800 1.22022 1.00453 0.94342 0.89585 1.21332 0.99796 0.92968 0.98574 1.18958 0.94836 0.94300 0.93156 1.21686 1.31458 0.97631 1.07108 0.91880 1.25988 0.95386 1.03501 0.95083 1.70092 1.38660 1.37389 1.11467 0.85514 0.79010 0.78950 0.77665 1.19063 1.21123 1.19103 1.25045 0.78937 0.80004 0.86226 1.90676 1.57548 1.33907 1.60373 1.84516 1.34045 1.65865 1.48106 1.19378 1.00631 0.94330 0.95513 1.21089 0.93914 1.01153 0.91811 1.21398 1.02708 0.92988 0.99869 1.17985 0.98283 0.91916 0.84765 1.91493 1.87573 1.82106 1.51217 1.21243 0.99496 1.01983 0.94301 1.20982 0.98638 0.93518 0.97140 0.88877 0.90085 0.92377 0.82008 0.90986 0.96062 0.92609 0.91936 0.99067 0.99422 0.92859 0.71304 0.82621 0.82544 0.82801 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 7.58 71.98 0.55 -2.42 16 2 C 0.18 4.01 0.76 2.03 0.00 4.01 16 3 N -0.65 -15.96 4.98 -477.63 -2.38 -18.34 16 4 C 0.06 2.05 4.95 86.30 0.43 2.48 16 5 C -0.09 -3.43 5.41 30.59 0.17 -3.26 16 6 C 0.03 1.30 4.97 29.85 0.15 1.45 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.09 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 10 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 11 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 C 0.46 11.51 5.53 71.23 0.39 11.91 16 16 O -0.54 -15.79 16.85 21.98 0.37 -15.42 16 17 O -0.51 -11.07 12.23 -51.35 -0.63 -11.70 16 18 C -0.10 -1.92 4.76 -19.86 -0.09 -2.01 16 19 C -0.06 -1.09 9.14 22.26 0.20 -0.88 16 20 C -0.15 -2.46 10.03 22.31 0.22 -2.24 16 21 C 0.09 1.59 7.30 22.38 0.16 1.76 16 22 F -0.15 -2.78 17.27 44.97 0.78 -2.00 16 23 C -0.15 -2.49 10.03 22.31 0.22 -2.27 16 24 C -0.08 -1.52 8.81 22.26 0.20 -1.33 16 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.66 7.12 -2.39 -0.02 1.64 16 27 H 0.06 1.47 6.40 -2.39 -0.02 1.45 16 28 H 0.36 8.07 7.22 -89.70 -0.65 7.42 16 29 H 0.07 2.37 6.30 -2.39 -0.02 2.35 16 30 H 0.02 0.72 6.64 -2.39 -0.02 0.70 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.43 5.94 9.10 -74.05 -0.67 5.27 16 37 H 0.16 2.53 6.41 -2.91 -0.02 2.51 16 38 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.14 2.40 7.57 -2.91 -0.02 2.38 16 Total: -1.00 -67.95 338.96 3.51 -64.44 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.24 Total: 16.37 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.29 Total: -22.56 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.09 Total: -74.98 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.26 Total: -27.12 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.95 3.51 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593265427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.083 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds