Wall clock time and date at job start Tue Mar 31 2020 06:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.46996 * 2 1 4 4 C 1.46905 * 110.99870 * 299.99880 * 3 2 1 5 5 C 1.52993 * 109.47039 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47360 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47387 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00144 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99821 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00108 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99834 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47164 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46812 * 120.00223 * 11 9 7 14 14 H 1.48494 * 109.47320 * 240.00038 * 11 9 7 15 15 C 1.50701 * 109.47048 * 239.99736 * 2 1 3 16 16 O 1.20816 * 120.00022 * 335.00195 * 15 2 1 17 17 O 1.34228 * 119.99808 * 154.99481 * 15 2 1 18 18 C 1.50697 * 109.46992 * 119.99624 * 2 1 3 19 19 C 1.38240 * 119.97473 * 239.72459 * 18 2 1 20 20 C 1.38204 * 120.02438 * 179.72965 * 19 18 2 21 21 C 1.38459 * 119.97242 * 0.56738 * 20 19 18 22 22 F 1.35105 * 120.02369 * 179.68038 * 21 20 19 23 23 C 1.38456 * 119.94682 * 359.70940 * 21 20 19 24 24 C 1.38196 * 119.97817 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46669 * 60.00240 * 1 2 3 26 26 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46960 * 300.00453 * 1 2 3 28 28 H 1.00901 * 111.00067 * 63.95055 * 3 2 1 29 29 H 1.09001 * 109.46798 * 300.00327 * 4 3 2 30 30 H 1.08998 * 109.46961 * 60.00043 * 4 3 2 31 31 H 1.09001 * 109.47393 * 299.99719 * 5 4 3 32 32 H 1.08998 * 109.47408 * 60.00073 * 5 4 3 33 33 H 1.09001 * 109.46514 * 300.00105 * 6 5 4 34 34 H 1.08998 * 109.46924 * 59.99625 * 6 5 4 35 35 H 0.97004 * 119.99990 * 179.97438 * 10 9 7 36 36 H 0.96696 * 117.00345 * 179.97438 * 17 15 2 37 37 H 1.07997 * 119.98783 * 359.97438 * 19 18 2 38 38 H 1.08003 * 120.00987 * 180.25261 * 20 19 18 39 39 H 1.08009 * 120.00913 * 180.02562 * 23 21 20 40 40 H 1.07999 * 119.98863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 -1.1878 5 6 2.0782 3.5448 -1.1527 6 6 1.5871 4.3001 -2.3895 7 6 2.1082 5.7137 -2.3547 8 1 2.7280 6.0407 -1.5329 9 6 1.7945 6.5892 -3.3725 10 7 1.0401 6.1909 -4.3734 11 14 2.4398 8.3417 -3.3290 12 1 3.2583 8.5376 -2.1056 13 1 3.2775 8.5906 -4.5297 14 1 1.2970 9.2899 -3.3176 15 6 2.0324 -0.7105 -1.2304 16 8 1.3397 -1.5362 -1.7763 17 8 3.2494 -0.4257 -1.7200 18 6 2.0324 -0.7103 1.2305 19 6 2.8318 -0.0396 2.1372 20 6 3.2884 -0.6884 3.2689 21 6 2.9546 -2.0141 3.4883 22 9 3.4057 -2.6512 4.5910 23 6 2.1586 -2.6864 2.5765 24 6 1.6977 -2.0337 1.4490 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7502 1.8638 0.8463 29 1 1.9121 1.6106 -2.0859 30 1 0.4588 2.1245 -1.1960 31 1 1.7151 4.0444 -0.2546 32 1 3.1680 3.5299 -1.1447 33 1 1.9499 3.8007 -3.2879 34 1 0.4973 4.3150 -2.3970 35 1 0.8191 6.8071 -5.0893 36 1 3.5282 -0.9074 -2.5107 37 1 3.0963 0.9929 1.9632 38 1 3.9096 -0.1629 3.9791 39 1 1.8972 -3.7205 2.7469 40 1 1.0765 -2.5579 0.7379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593265436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:20 Heat of formation + Delta-G solvation = -117.523702 kcal Electronic energy + Delta-G solvation = -23428.037444 eV Core-core repulsion = 19735.868916 eV Total energy + Delta-G solvation = -3692.168527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.14934 -41.04033 -39.18293 -36.96751 -36.15434 -34.08652 -32.33401 -31.48949 -30.21110 -28.81893 -26.34666 -25.15279 -23.51290 -22.87231 -22.23454 -20.27765 -20.03760 -18.09700 -18.02696 -17.06668 -16.73620 -16.22798 -16.01732 -15.83239 -15.14170 -15.06439 -14.68794 -14.48728 -14.09404 -13.86921 -13.64808 -13.25257 -13.17623 -12.88832 -12.58185 -12.26905 -12.20270 -11.80869 -11.58415 -11.55078 -11.46403 -11.17804 -10.88012 -10.69346 -10.55842 -10.50530 -9.75603 -9.39819 -9.38651 -9.08410 -8.91183 -8.48387 -8.36403 -6.01307 -4.03549 0.76539 0.95814 2.10691 2.90981 3.30381 3.33079 3.38007 3.42078 3.85921 3.96970 4.30116 4.45553 4.49782 4.60528 4.74399 5.01653 5.06671 5.19146 5.34762 5.38462 5.45367 5.59484 5.62399 5.68700 5.73624 5.83240 5.91778 6.00202 6.16002 6.22068 6.44064 6.56146 6.61011 6.64070 7.01383 7.08547 7.30175 7.65969 7.79536 7.89174 7.98611 8.41247 9.03858 9.60776 11.10159 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.003087 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.863772 B = 9066.675023 C = 9785.154422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.167 3.833 3 N -0.666 5.666 4 C 0.051 3.949 5 C -0.104 4.104 6 C 0.022 3.978 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.502 3.498 16 O -0.518 6.518 17 O -0.490 6.490 18 C -0.091 4.091 19 C -0.058 4.058 20 C -0.154 4.154 21 C 0.100 3.900 22 F -0.141 7.141 23 C -0.155 4.155 24 C -0.081 4.081 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.350 0.650 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.405 0.595 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -17.566 13.668 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.074 3.926 3 N -0.300 5.300 4 C -0.077 4.077 5 C -0.142 4.142 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.344 3.656 16 O -0.406 6.406 17 O -0.299 6.299 18 C -0.092 4.092 19 C -0.076 4.076 20 C -0.173 4.173 21 C 0.081 3.919 22 F -0.120 7.120 23 C -0.174 4.174 24 C -0.100 4.100 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.170 0.830 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.263 0.737 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.047 -17.693 13.465 22.328 hybrid contribution -0.382 0.635 -0.269 0.788 sum 1.665 -17.058 13.196 21.630 Atomic orbital electron populations 1.22475 0.92597 1.04274 1.03796 1.19433 0.93890 0.90878 0.88397 1.60822 1.62741 0.99456 1.06973 1.22330 0.97457 0.96421 0.91489 1.21599 1.00706 0.91046 1.00832 1.19064 0.96296 0.94462 0.91734 1.21271 1.31230 0.96255 1.06893 0.92554 1.25032 0.95238 0.98742 0.95529 1.69975 1.37381 1.35511 1.10697 0.86542 0.78692 0.84814 0.77991 1.19693 1.21030 1.21066 1.22970 0.78999 0.79560 0.84088 1.90708 1.57410 1.33289 1.59210 1.84687 1.34061 1.64736 1.46411 1.19447 0.99962 0.94263 0.95517 1.21038 0.93801 1.01345 0.91426 1.21215 1.03083 0.93236 0.99790 1.17809 0.97916 0.91488 0.84701 1.91503 1.87440 1.81976 1.51039 1.21060 1.00210 1.01130 0.94965 1.20942 0.98492 0.93763 0.96762 0.90578 0.90598 0.90632 0.82959 0.91258 0.94693 0.93412 0.92198 0.96601 0.96803 0.93070 0.73721 0.83124 0.84333 0.84584 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 7.58 37.16 0.28 -1.63 16 2 C 0.17 1.99 0.76 -133.90 -0.10 1.89 16 3 N -0.67 -8.52 4.86 -102.32 -0.50 -9.02 16 4 C 0.05 0.82 4.95 -3.82 -0.02 0.80 16 5 C -0.10 -2.02 5.41 -26.73 -0.14 -2.17 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.50 6.76 5.53 36.01 0.20 6.96 16 16 O -0.52 -7.80 16.85 -18.74 -0.32 -8.12 16 17 O -0.49 -6.10 12.48 -39.25 -0.49 -6.59 16 18 C -0.09 -0.97 4.76 -104.62 -0.50 -1.46 16 19 C -0.06 -0.57 9.14 -39.59 -0.36 -0.93 16 20 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 21 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 22 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 23 C -0.15 -1.43 10.03 -39.52 -0.40 -1.82 16 24 C -0.08 -0.80 8.81 -39.59 -0.35 -1.15 16 25 H 0.08 0.94 6.40 -51.93 -0.33 0.61 16 26 H 0.08 0.80 7.11 -51.93 -0.37 0.43 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.35 3.89 7.57 -39.29 -0.30 3.59 16 29 H 0.07 1.20 6.64 -51.93 -0.34 0.85 16 30 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.40 3.30 9.10 45.56 0.41 3.72 16 37 H 0.15 1.39 6.41 -52.49 -0.34 1.05 16 38 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.14 1.27 7.57 -52.49 -0.40 0.87 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -32.30 339.43 -7.55 -39.85 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.49 Total: 3.33 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.62 Total: -13.53 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.24 Total: -35.09 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.81 Total: -14.70 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.30 -7.55 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593265436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.678 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds