Wall clock time and date at job start Tue Mar 31 2020 06:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.46996 * 2 1 4 4 C 1.46905 * 110.99870 * 299.99880 * 3 2 1 5 5 C 1.52993 * 109.47039 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47360 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47387 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00144 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99821 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00108 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99834 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47164 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46812 * 120.00223 * 11 9 7 14 14 H 1.48494 * 109.47320 * 240.00038 * 11 9 7 15 15 C 1.50701 * 109.47048 * 239.99736 * 2 1 3 16 16 O 1.20816 * 120.00022 * 335.00195 * 15 2 1 17 17 O 1.34228 * 119.99808 * 154.99481 * 15 2 1 18 18 C 1.50697 * 109.46992 * 119.99624 * 2 1 3 19 19 C 1.38240 * 119.97473 * 239.72459 * 18 2 1 20 20 C 1.38204 * 120.02438 * 179.72965 * 19 18 2 21 21 C 1.38459 * 119.97242 * 0.56738 * 20 19 18 22 22 F 1.35105 * 120.02369 * 179.68038 * 21 20 19 23 23 C 1.38456 * 119.94682 * 359.70940 * 21 20 19 24 24 C 1.38196 * 119.97817 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46669 * 60.00240 * 1 2 3 26 26 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46960 * 300.00453 * 1 2 3 28 28 H 1.00901 * 111.00067 * 63.95055 * 3 2 1 29 29 H 1.09001 * 109.46798 * 300.00327 * 4 3 2 30 30 H 1.08998 * 109.46961 * 60.00043 * 4 3 2 31 31 H 1.09001 * 109.47393 * 299.99719 * 5 4 3 32 32 H 1.08998 * 109.47408 * 60.00073 * 5 4 3 33 33 H 1.09001 * 109.46514 * 300.00105 * 6 5 4 34 34 H 1.08998 * 109.46924 * 59.99625 * 6 5 4 35 35 H 0.97004 * 119.99990 * 179.97438 * 10 9 7 36 36 H 0.96696 * 117.00345 * 179.97438 * 17 15 2 37 37 H 1.07997 * 119.98783 * 359.97438 * 19 18 2 38 38 H 1.08003 * 120.00987 * 180.25261 * 20 19 18 39 39 H 1.08009 * 120.00913 * 180.02562 * 23 21 20 40 40 H 1.07999 * 119.98863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 -1.1878 5 6 2.0782 3.5448 -1.1527 6 6 1.5871 4.3001 -2.3895 7 6 2.1082 5.7137 -2.3547 8 1 2.7280 6.0407 -1.5329 9 6 1.7945 6.5892 -3.3725 10 7 1.0401 6.1909 -4.3734 11 14 2.4398 8.3417 -3.3290 12 1 3.2583 8.5376 -2.1056 13 1 3.2775 8.5906 -4.5297 14 1 1.2970 9.2899 -3.3176 15 6 2.0324 -0.7105 -1.2304 16 8 1.3397 -1.5362 -1.7763 17 8 3.2494 -0.4257 -1.7200 18 6 2.0324 -0.7103 1.2305 19 6 2.8318 -0.0396 2.1372 20 6 3.2884 -0.6884 3.2689 21 6 2.9546 -2.0141 3.4883 22 9 3.4057 -2.6512 4.5910 23 6 2.1586 -2.6864 2.5765 24 6 1.6977 -2.0337 1.4490 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7502 1.8638 0.8463 29 1 1.9121 1.6106 -2.0859 30 1 0.4588 2.1245 -1.1960 31 1 1.7151 4.0444 -0.2546 32 1 3.1680 3.5299 -1.1447 33 1 1.9499 3.8007 -3.2879 34 1 0.4973 4.3150 -2.3970 35 1 0.8191 6.8071 -5.0893 36 1 3.5282 -0.9074 -2.5107 37 1 3.0963 0.9929 1.9632 38 1 3.9096 -0.1629 3.9791 39 1 1.8972 -3.7205 2.7469 40 1 1.0765 -2.5579 0.7379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593265436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:19 Heat of formation + Delta-G solvation = -137.627270 kcal Electronic energy + Delta-G solvation = -23428.909200 eV Core-core repulsion = 19735.868916 eV Total energy + Delta-G solvation = -3693.040283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.91801 -42.01881 -40.04013 -38.06529 -37.19805 -35.82369 -33.99216 -32.29913 -31.50621 -29.79779 -27.93700 -26.28635 -24.81116 -23.69764 -23.45583 -21.91984 -20.99685 -19.14203 -18.84592 -18.47155 -17.87173 -17.65691 -16.93164 -16.60747 -16.51688 -16.33044 -16.05311 -15.61443 -15.08177 -14.90849 -14.51295 -14.44695 -14.21140 -14.09928 -13.82003 -13.61558 -13.32644 -13.13857 -13.01427 -12.67205 -12.60736 -12.54971 -12.41130 -12.22855 -11.99953 -11.61824 -11.49272 -11.35550 -11.09583 -10.54001 -10.10412 -9.72729 -9.54148 -8.18393 -6.28881 -0.00646 0.23995 1.07500 1.41799 1.42414 1.55617 2.01542 2.42378 2.55742 2.83187 3.15464 3.21951 3.43011 3.77646 3.79292 3.95588 4.18100 4.20202 4.29485 4.33975 4.42462 4.53213 4.58252 4.71700 4.90181 4.93687 4.96800 5.05504 5.08972 5.13042 5.22081 5.27856 5.41095 5.50380 5.55816 5.76406 5.80798 5.85941 5.89381 6.26711 6.29200 6.89057 6.95199 7.40657 8.93774 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.003087 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.863772 B = 9066.675023 C = 9785.154422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.170 3.830 3 N -0.659 5.659 4 C 0.066 3.934 5 C -0.088 4.088 6 C 0.024 3.976 7 C -0.538 4.538 8 H 0.063 0.937 9 C -0.003 4.003 10 N -0.936 5.936 11 Si 0.964 3.036 12 H -0.259 1.259 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.498 3.502 16 O -0.540 6.540 17 O -0.496 6.496 18 C -0.098 4.098 19 C -0.061 4.061 20 C -0.152 4.152 21 C 0.089 3.911 22 F -0.145 7.145 23 C -0.152 4.152 24 C -0.085 4.085 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.363 0.637 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.057 0.943 33 H -0.013 1.013 34 H -0.009 1.009 35 H 0.262 0.738 36 H 0.421 0.579 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -17.350 15.375 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.078 3.922 3 N -0.294 5.294 4 C -0.063 4.063 5 C -0.126 4.126 6 C -0.013 4.013 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.200 4.200 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.183 1.183 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.341 3.659 16 O -0.429 6.429 17 O -0.308 6.308 18 C -0.099 4.099 19 C -0.079 4.079 20 C -0.170 4.170 21 C 0.070 3.930 22 F -0.124 7.124 23 C -0.171 4.171 24 C -0.103 4.103 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.185 0.815 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.006 0.994 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.281 0.719 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.788 -17.486 15.190 23.330 hybrid contribution -0.587 0.503 -0.808 1.118 sum 2.201 -16.983 14.382 22.363 Atomic orbital electron populations 1.22474 0.92016 1.04675 1.03821 1.19449 0.94330 0.89925 0.88543 1.60651 1.62695 0.99839 1.06241 1.21969 0.97259 0.94571 0.92493 1.21320 1.00353 0.92560 0.98363 1.18974 0.94724 0.94311 0.93324 1.21736 1.31202 0.97560 1.07096 0.91900 1.25989 0.95421 1.03506 0.95110 1.70108 1.38733 1.37250 1.11537 0.85408 0.78212 0.79063 0.78429 1.18325 1.20636 1.20497 1.23323 0.78965 0.79294 0.84325 1.90693 1.57950 1.34351 1.59946 1.84653 1.33700 1.65055 1.47378 1.19380 1.00759 0.94629 0.95106 1.21103 0.93686 1.01640 0.91447 1.21403 1.02751 0.93072 0.99786 1.17988 0.98298 0.91897 0.84780 1.91494 1.87542 1.82093 1.51279 1.21241 0.99523 1.01953 0.94353 1.20980 0.98691 0.93550 0.97085 0.92229 0.90078 0.88843 0.81485 0.92738 0.94610 0.92135 0.92437 0.99446 0.99079 0.92882 0.71867 0.82538 0.82573 0.82835 0.84485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 7.58 71.98 0.55 -3.07 16 2 C 0.17 3.85 0.76 2.04 0.00 3.85 16 3 N -0.66 -15.94 4.86 -477.63 -2.32 -18.26 16 4 C 0.07 2.08 4.95 86.30 0.43 2.51 16 5 C -0.09 -3.39 5.41 30.59 0.17 -3.22 16 6 C 0.02 1.26 4.97 29.85 0.15 1.40 16 7 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 10 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 11 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 15 C 0.50 13.13 5.53 71.24 0.39 13.52 16 16 O -0.54 -16.12 16.85 21.99 0.37 -15.75 16 17 O -0.50 -12.06 12.48 -51.40 -0.64 -12.70 16 18 C -0.10 -1.91 4.76 -19.86 -0.09 -2.01 16 19 C -0.06 -1.06 9.14 22.26 0.20 -0.86 16 20 C -0.15 -2.46 10.03 22.31 0.22 -2.24 16 21 C 0.09 1.59 7.30 22.37 0.16 1.76 16 22 F -0.15 -2.79 17.27 44.97 0.78 -2.01 16 23 C -0.15 -2.51 10.03 22.31 0.22 -2.29 16 24 C -0.08 -1.53 8.81 22.26 0.20 -1.34 16 25 H 0.06 1.45 6.40 -2.39 -0.02 1.44 16 26 H 0.08 1.62 7.11 -2.39 -0.02 1.61 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.36 7.28 7.57 -89.69 -0.68 6.60 16 29 H 0.05 1.90 6.64 -2.39 -0.02 1.88 16 30 H 0.04 1.13 6.30 -2.39 -0.02 1.12 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.42 6.68 9.10 -74.06 -0.67 6.00 16 37 H 0.16 2.51 6.41 -2.91 -0.02 2.49 16 38 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.14 2.41 7.57 -2.91 -0.02 2.38 16 Total: -1.00 -68.95 339.43 3.51 -65.44 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.27 Total: 15.56 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.29 Total: -21.58 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.04 Total: -74.86 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.27 Total: -28.45 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -68.95 3.51 -65.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593265436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.189 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds