Wall clock time and date at job start Tue Mar 31 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47266 * 2 1 4 4 C 1.38267 * 119.98435 * 264.42978 * 3 2 1 5 5 C 1.38224 * 120.04782 * 179.72273 * 4 3 2 6 6 C 1.38221 * 120.02602 * 0.24993 * 5 4 3 7 7 C 1.38440 * 119.97554 * 0.02562 * 6 5 4 8 8 F 1.35095 * 120.02392 * 180.02562 * 7 6 5 9 9 C 1.38172 * 119.98789 * 84.69860 * 3 2 1 10 10 C 1.50700 * 120.01530 * 0.02562 * 9 3 2 11 11 N 1.46507 * 109.47176 * 98.74311 * 10 9 3 12 12 C 1.36936 * 119.99748 * 266.22509 * 11 10 9 13 13 H 1.07995 * 120.00218 * 11.66706 * 12 11 10 14 14 C 1.38813 * 119.99829 * 191.66552 * 12 11 10 15 15 N 1.31620 * 120.00001 * 28.79258 * 14 12 11 16 16 Si 1.86799 * 119.99896 * 208.80080 * 14 12 11 17 17 H 1.48500 * 109.47354 * 59.99707 * 16 14 12 18 18 H 1.48500 * 109.47026 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47169 * 299.99358 * 16 14 12 20 20 C 1.46501 * 119.99912 * 86.22363 * 11 10 9 21 21 C 1.52998 * 109.46961 * 83.25541 * 20 11 10 22 22 C 1.50698 * 109.47150 * 179.97438 * 21 20 11 23 23 O 1.20827 * 119.99897 * 0.02562 * 22 21 20 24 24 O 1.34227 * 120.00076 * 179.97438 * 22 21 20 25 25 H 1.08994 * 109.47065 * 65.28100 * 1 2 3 26 26 H 1.08997 * 109.47175 * 185.29024 * 1 2 3 27 27 H 1.09005 * 109.46745 * 305.28156 * 1 2 3 28 28 H 1.09002 * 109.47155 * 239.99998 * 2 1 3 29 29 H 1.09003 * 109.47199 * 120.00187 * 2 1 3 30 30 H 1.07993 * 119.97599 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.98534 * 180.27055 * 5 4 3 32 32 H 1.08000 * 120.00899 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47440 * 218.74472 * 10 9 3 34 34 H 1.09004 * 109.47012 * 338.74471 * 10 9 3 35 35 H 0.97000 * 119.99713 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46673 * 203.25552 * 20 11 10 37 37 H 1.08994 * 109.47015 * 323.25449 * 20 11 10 38 38 H 1.08997 * 109.47273 * 300.00051 * 21 20 11 39 39 H 1.09001 * 109.46988 * 59.99923 * 21 20 11 40 40 H 0.96707 * 116.99971 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3723 2.0336 -1.1920 5 6 2.8278 3.3386 -1.1941 6 6 2.9488 4.0308 -0.0038 7 6 2.6142 3.4165 1.1908 8 9 2.7316 4.0923 2.3546 9 6 2.1584 2.1088 1.1916 10 6 1.7941 1.4385 2.4912 11 7 3.0093 0.9433 3.1428 12 6 3.4166 -0.3484 2.9407 13 1 2.9598 -0.9434 2.1638 14 6 4.4167 -0.8929 3.7345 15 7 4.5846 -0.4645 4.9677 16 14 5.5244 -2.2335 3.0525 17 1 6.2503 -1.7188 1.8637 18 1 6.5038 -2.6424 4.0912 19 1 4.7001 -3.4049 2.6603 20 6 3.7886 1.8300 4.0103 21 6 3.1733 1.8427 5.4111 22 6 3.9752 2.7543 6.3037 23 8 4.9397 3.3347 5.8645 24 8 3.6176 2.9224 7.5865 25 1 -0.3633 0.4297 -0.9334 26 1 -0.3633 -1.0233 0.0947 27 1 -0.3633 0.5936 0.8390 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2781 1.4935 -2.1224 31 1 3.0889 3.8177 -2.1261 32 1 3.3052 5.0504 -0.0057 33 1 1.2987 2.1569 3.1443 34 1 1.1218 0.6035 2.2934 35 1 5.2838 -0.8448 5.5222 36 1 4.8160 1.4707 4.0680 37 1 3.7792 2.8397 3.6002 38 1 2.1458 2.2019 5.3534 39 1 3.1826 0.8329 5.8212 40 1 4.1624 3.5173 8.1199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597592899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:58 Heat of formation + Delta-G solvation = -95.860455 kcal Electronic energy + Delta-G solvation = -24790.691553 eV Core-core repulsion = 21099.462414 eV Total energy + Delta-G solvation = -3691.229139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.38562 -39.39785 -39.09870 -36.11747 -35.27961 -33.82962 -31.93111 -30.80776 -29.39566 -29.01712 -25.83538 -24.55850 -23.57962 -22.14357 -21.05898 -20.39851 -19.57010 -17.42965 -16.91745 -16.65864 -16.03989 -15.75812 -15.39126 -15.28169 -15.02373 -14.61253 -13.99080 -13.80764 -13.60476 -13.25066 -13.19157 -12.78821 -12.49373 -12.32752 -12.05641 -11.76078 -11.54696 -11.47182 -11.33741 -11.05474 -10.85488 -10.82351 -10.73512 -10.49867 -10.34867 -10.11906 -9.76269 -9.69678 -9.43553 -8.49125 -8.30599 -8.17784 -7.04102 -5.91998 -3.18727 1.58807 1.63719 3.11528 3.36237 3.45218 3.47892 3.88222 4.00121 4.48079 4.71934 5.02547 5.09790 5.21816 5.38388 5.43809 5.49201 5.55290 5.67250 5.75173 5.81440 6.06617 6.13900 6.14974 6.25048 6.29483 6.34943 6.38615 6.50397 6.59830 6.64673 6.71483 6.79073 6.81940 7.02263 7.16302 7.35062 7.48404 7.61645 7.84253 8.22156 8.71402 9.11003 9.74274 10.20418 11.14790 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.007167 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.589030 B = 3905.868144 C = 5370.441149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.040 4.040 4 C -0.135 4.135 5 C -0.105 4.105 6 C -0.167 4.167 7 C 0.106 3.894 8 F -0.136 7.136 9 C -0.112 4.112 10 C 0.177 3.823 11 N -0.581 5.581 12 C -0.260 4.260 13 H 0.080 0.920 14 C 0.008 3.992 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.180 3.820 21 C -0.124 4.124 22 C 0.485 3.515 23 O -0.533 6.533 24 O -0.529 6.529 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.066 0.934 39 H 0.147 0.853 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 5.117 -6.675 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.041 4.041 4 C -0.154 4.154 5 C -0.123 4.123 6 C -0.186 4.186 7 C 0.086 3.914 8 F -0.115 7.115 9 C -0.116 4.116 10 C 0.049 3.951 11 N -0.301 5.301 12 C -0.388 4.388 13 H 0.097 0.903 14 C -0.191 4.191 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.210 1.210 20 C 0.054 3.946 21 C -0.163 4.163 22 C 0.330 3.670 23 O -0.422 6.422 24 O -0.340 6.340 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.165 0.835 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.710 4.933 -6.844 10.779 hybrid contribution 1.261 -0.027 0.277 1.291 sum -5.449 4.906 -6.567 9.843 Atomic orbital electron populations 1.21741 0.95080 1.01596 1.01637 1.20789 0.95737 0.92714 1.04331 1.19578 0.97022 0.95907 0.91606 1.21003 1.01576 0.95184 0.97593 1.20777 0.99920 0.94642 0.96985 1.21009 1.04792 1.00975 0.91785 1.17577 1.01711 0.90892 0.81235 1.91447 1.93595 1.79715 1.46742 1.21022 0.99692 0.92166 0.98684 1.19802 0.89883 0.96922 0.88444 1.44092 1.24768 1.09681 1.51511 1.19229 1.17445 0.88978 1.13143 0.90270 1.24656 1.01033 0.98557 0.94816 1.69924 1.33321 1.45413 1.05091 0.86517 0.81383 0.81351 0.78639 1.21173 1.21748 1.20969 1.20592 0.96819 0.91524 0.85675 1.22441 0.96620 1.00805 0.96479 1.24378 0.83551 0.79179 0.79935 1.90614 1.28808 1.47500 1.75244 1.84655 1.58998 1.65256 1.25122 0.93201 0.92513 0.92368 0.91505 0.88286 0.86254 0.85985 0.85709 0.93497 0.91030 0.93342 0.89786 0.94849 0.91587 0.83533 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.62 37.16 0.36 -1.40 16 2 C -0.10 -1.45 5.36 -27.88 -0.15 -1.60 16 3 C -0.04 -0.65 5.13 -104.63 -0.54 -1.19 16 4 C -0.14 -1.93 9.68 -39.58 -0.38 -2.31 16 5 C -0.10 -1.44 10.04 -39.59 -0.40 -1.83 16 6 C -0.17 -2.58 10.03 -39.51 -0.40 -2.98 16 7 C 0.11 1.93 7.14 -39.42 -0.28 1.65 16 8 F -0.14 -2.68 14.22 2.25 0.03 -2.65 16 9 C -0.11 -2.05 5.47 -104.56 -0.57 -2.62 16 10 C 0.18 3.47 5.08 -5.19 -0.03 3.44 16 11 N -0.58 -13.55 2.52 -174.61 -0.44 -13.99 16 12 C -0.26 -6.51 9.49 -15.06 -0.14 -6.66 16 13 H 0.08 1.90 5.57 -52.49 -0.29 1.61 16 14 C 0.01 0.20 4.73 -17.43 -0.08 0.12 16 15 N -0.89 -23.94 8.85 55.49 0.49 -23.44 16 16 Si 0.89 20.99 29.64 -169.99 -5.04 15.95 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.18 4.34 4.18 -4.04 -0.02 4.32 16 21 C -0.12 -2.74 5.67 -27.89 -0.16 -2.90 16 22 C 0.49 10.29 8.33 36.00 0.30 10.59 16 23 O -0.53 -12.60 16.74 -18.75 -0.31 -12.92 16 24 O -0.53 -9.15 13.42 -39.25 -0.53 -9.68 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.74 7.24 -51.93 -0.38 0.36 16 28 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 29 H 0.10 1.71 4.24 -51.93 -0.22 1.49 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.05 0.90 7.73 -51.93 -0.40 0.50 16 34 H 0.07 1.32 5.09 -51.93 -0.26 1.06 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.08 2.33 6.14 -51.93 -0.32 2.01 16 37 H 0.03 0.80 5.37 -51.93 -0.28 0.52 16 38 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 39 H 0.15 3.60 6.01 -51.93 -0.31 3.29 16 40 H 0.39 4.82 9.10 45.56 0.41 5.24 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -29.47 327.97 -7.47 -36.94 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.13 Total: 8.22 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.49 Total: -3.38 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.05 Total: -37.44 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.84 Total: -22.59 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.03 Total: -2.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.04 Total: 15.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.47 -7.47 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597592899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.918 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds