Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47266 * 2 1 4 4 C 1.38267 * 119.98435 * 264.42978 * 3 2 1 5 5 C 1.38224 * 120.04782 * 179.72273 * 4 3 2 6 6 C 1.38221 * 120.02602 * 0.24993 * 5 4 3 7 7 C 1.38440 * 119.97554 * 0.02562 * 6 5 4 8 8 F 1.35095 * 120.02392 * 180.02562 * 7 6 5 9 9 C 1.38172 * 119.98789 * 84.69860 * 3 2 1 10 10 C 1.50700 * 120.01530 * 0.02562 * 9 3 2 11 11 N 1.46507 * 109.47176 * 98.74311 * 10 9 3 12 12 C 1.36936 * 119.99748 * 266.22509 * 11 10 9 13 13 H 1.07995 * 120.00218 * 11.66706 * 12 11 10 14 14 C 1.38813 * 119.99829 * 191.66552 * 12 11 10 15 15 N 1.31620 * 120.00001 * 28.79258 * 14 12 11 16 16 Si 1.86799 * 119.99896 * 208.80080 * 14 12 11 17 17 H 1.48500 * 109.47354 * 59.99707 * 16 14 12 18 18 H 1.48500 * 109.47026 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47169 * 299.99358 * 16 14 12 20 20 C 1.46501 * 119.99912 * 86.22363 * 11 10 9 21 21 C 1.52998 * 109.46961 * 83.25541 * 20 11 10 22 22 C 1.50698 * 109.47150 * 179.97438 * 21 20 11 23 23 O 1.20827 * 119.99897 * 0.02562 * 22 21 20 24 24 O 1.34227 * 120.00076 * 179.97438 * 22 21 20 25 25 H 1.08994 * 109.47065 * 65.28100 * 1 2 3 26 26 H 1.08997 * 109.47175 * 185.29024 * 1 2 3 27 27 H 1.09005 * 109.46745 * 305.28156 * 1 2 3 28 28 H 1.09002 * 109.47155 * 239.99998 * 2 1 3 29 29 H 1.09003 * 109.47199 * 120.00187 * 2 1 3 30 30 H 1.07993 * 119.97599 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.98534 * 180.27055 * 5 4 3 32 32 H 1.08000 * 120.00899 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47440 * 218.74472 * 10 9 3 34 34 H 1.09004 * 109.47012 * 338.74471 * 10 9 3 35 35 H 0.97000 * 119.99713 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.46673 * 203.25552 * 20 11 10 37 37 H 1.08994 * 109.47015 * 323.25449 * 20 11 10 38 38 H 1.08997 * 109.47273 * 300.00051 * 21 20 11 39 39 H 1.09001 * 109.46988 * 59.99923 * 21 20 11 40 40 H 0.96707 * 116.99971 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3723 2.0336 -1.1920 5 6 2.8278 3.3386 -1.1941 6 6 2.9488 4.0308 -0.0038 7 6 2.6142 3.4165 1.1908 8 9 2.7316 4.0923 2.3546 9 6 2.1584 2.1088 1.1916 10 6 1.7941 1.4385 2.4912 11 7 3.0093 0.9433 3.1428 12 6 3.4166 -0.3484 2.9407 13 1 2.9598 -0.9434 2.1638 14 6 4.4167 -0.8929 3.7345 15 7 4.5846 -0.4645 4.9677 16 14 5.5244 -2.2335 3.0525 17 1 6.2503 -1.7188 1.8637 18 1 6.5038 -2.6424 4.0912 19 1 4.7001 -3.4049 2.6603 20 6 3.7886 1.8300 4.0103 21 6 3.1733 1.8427 5.4111 22 6 3.9752 2.7543 6.3037 23 8 4.9397 3.3347 5.8645 24 8 3.6176 2.9224 7.5865 25 1 -0.3633 0.4297 -0.9334 26 1 -0.3633 -1.0233 0.0947 27 1 -0.3633 0.5936 0.8390 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.2781 1.4935 -2.1224 31 1 3.0889 3.8177 -2.1261 32 1 3.3052 5.0504 -0.0057 33 1 1.2987 2.1569 3.1443 34 1 1.1218 0.6035 2.2934 35 1 5.2838 -0.8448 5.5222 36 1 4.8160 1.4707 4.0680 37 1 3.7792 2.8397 3.6002 38 1 2.1458 2.2019 5.3534 39 1 3.1826 0.8329 5.8212 40 1 4.1624 3.5173 8.1199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597592899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = -111.916465 kcal Electronic energy + Delta-G solvation = -24791.387794 eV Core-core repulsion = 21099.462414 eV Total energy + Delta-G solvation = -3691.925379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.80125 -41.07000 -40.36180 -37.81979 -36.90690 -35.03305 -33.60544 -32.52421 -30.98350 -30.16935 -27.41465 -26.36195 -24.75568 -23.71307 -22.44593 -21.80681 -21.18770 -19.13587 -18.56479 -18.05753 -17.46351 -17.35947 -17.04029 -16.62255 -16.59895 -16.33543 -15.40951 -15.20468 -15.05202 -14.85860 -14.57925 -14.06706 -13.96039 -13.71724 -13.63243 -13.33984 -13.07897 -12.87466 -12.68643 -12.54868 -12.51296 -12.42203 -12.33533 -12.04386 -11.90409 -11.59786 -11.46593 -11.41901 -11.22229 -10.40590 -9.56614 -9.44864 -8.90823 -7.87377 -5.14035 0.36008 0.41597 1.40283 1.47427 1.54346 1.57341 2.35004 2.55363 2.76899 3.27190 3.47622 3.79969 3.86091 3.98734 4.14586 4.22858 4.36893 4.41585 4.57791 4.59896 4.62881 4.72530 4.75014 4.85415 4.91936 5.02548 5.11116 5.15859 5.20658 5.30851 5.40397 5.46876 5.52501 5.57906 5.59224 5.72687 5.79933 5.94834 6.14202 6.28761 7.14229 7.17691 7.85652 8.30378 9.17317 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.007167 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.589030 B = 3905.868144 C = 5370.441149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.050 4.050 4 C -0.132 4.132 5 C -0.093 4.093 6 C -0.171 4.171 7 C 0.073 3.927 8 F -0.154 7.154 9 C -0.136 4.136 10 C 0.180 3.820 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.089 0.911 14 C -0.042 4.042 15 N -0.914 5.914 16 Si 0.943 3.057 17 H -0.292 1.292 18 H -0.302 1.302 19 H -0.271 1.271 20 C 0.192 3.808 21 C -0.117 4.117 22 C 0.493 3.507 23 O -0.561 6.561 24 O -0.516 6.516 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.044 0.956 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 5.336 -8.938 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 C -0.051 4.051 4 C -0.150 4.150 5 C -0.111 4.111 6 C -0.190 4.190 7 C 0.054 3.946 8 F -0.132 7.132 9 C -0.139 4.139 10 C 0.055 3.945 11 N -0.312 5.312 12 C -0.383 4.383 13 H 0.106 0.894 14 C -0.238 4.238 15 N -0.560 5.560 16 Si 0.773 3.227 17 H -0.219 1.219 18 H -0.229 1.229 19 H -0.197 1.197 20 C 0.066 3.934 21 C -0.156 4.156 22 C 0.338 3.662 23 O -0.453 6.453 24 O -0.329 6.329 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.170 0.830 31 H 0.180 0.820 32 H 0.161 0.839 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -7.622 5.162 -9.106 12.948 hybrid contribution 1.469 -0.017 0.924 1.735 sum -6.153 5.144 -8.182 11.457 Atomic orbital electron populations 1.21699 0.93311 1.02319 1.02144 1.20770 0.97272 0.91713 1.03653 1.19851 0.97009 0.96520 0.91698 1.21411 1.00006 0.95545 0.97990 1.21265 0.97766 0.94340 0.97741 1.21326 1.04270 1.02003 0.91388 1.17993 1.03495 0.91396 0.81722 1.91391 1.93940 1.80021 1.47895 1.20858 1.01785 0.92690 0.98583 1.19830 0.88551 0.97102 0.89063 1.44205 1.25836 1.09099 1.52092 1.19558 1.16823 0.89540 1.12395 0.89356 1.25245 1.02515 1.00797 0.95234 1.70067 1.33475 1.46747 1.05750 0.85685 0.79809 0.79993 0.77238 1.21939 1.22906 1.19696 1.20273 0.95055 0.91040 0.87032 1.22164 0.97557 1.00118 0.95806 1.24028 0.82719 0.78511 0.80920 1.90605 1.29864 1.48700 1.76145 1.84562 1.59132 1.65671 1.23503 0.91403 0.91405 0.93422 0.89682 0.91292 0.82951 0.82014 0.83926 0.93838 0.90249 0.94409 0.93777 0.95229 0.89952 0.85568 0.72150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.62 71.98 0.69 -2.38 16 2 C -0.10 -2.67 5.36 29.85 0.16 -2.51 16 3 C -0.05 -1.53 5.13 -19.87 -0.10 -1.63 16 4 C -0.13 -3.26 9.68 22.27 0.22 -3.04 16 5 C -0.09 -2.20 10.04 22.26 0.22 -1.97 16 6 C -0.17 -4.96 10.03 22.31 0.22 -4.74 16 7 C 0.07 2.67 7.14 22.38 0.16 2.83 16 8 F -0.15 -6.18 14.22 44.97 0.64 -5.54 16 9 C -0.14 -4.93 5.47 -19.82 -0.11 -5.04 16 10 C 0.18 7.18 5.08 85.63 0.44 7.61 16 11 N -0.59 -28.24 2.52 -706.33 -1.78 -30.02 16 12 C -0.25 -12.93 9.49 84.03 0.80 -12.13 16 13 H 0.09 4.25 5.57 -2.91 -0.02 4.24 16 14 C -0.04 -2.25 4.73 84.86 0.40 -1.85 16 15 N -0.91 -50.62 8.85 21.65 0.19 -50.43 16 16 Si 0.94 43.90 29.64 68.60 2.03 45.93 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C 0.19 9.60 4.18 86.38 0.36 9.96 16 21 C -0.12 -5.30 5.67 29.85 0.17 -5.13 16 22 C 0.49 21.06 8.33 71.24 0.59 21.65 16 23 O -0.56 -27.01 16.74 21.96 0.37 -26.64 16 24 O -0.52 -17.24 13.42 -51.39 -0.69 -17.93 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.15 7.24 -2.38 -0.02 1.14 16 28 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 29 H 0.07 2.33 4.24 -2.39 -0.01 2.32 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.04 1.71 7.73 -2.39 -0.02 1.70 16 34 H 0.08 2.96 5.09 -2.38 -0.01 2.95 16 35 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.04 2.55 6.14 -2.39 -0.01 2.53 16 37 H 0.03 1.48 5.37 -2.39 -0.01 1.47 16 38 H 0.08 3.40 8.01 -2.39 -0.02 3.38 16 39 H 0.13 6.39 6.01 -2.39 -0.01 6.38 16 40 H 0.42 9.51 9.10 -74.05 -0.67 8.84 16 Total: -1.00 -65.38 327.97 5.40 -59.98 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.41 Total: 23.03 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 4.22 Total: 1.63 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.59 Total: -80.45 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.32 Total: -44.58 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.64 Total: -5.54 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -65.38 5.40 -59.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597592899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.937 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds