Wall clock time and date at job start Tue Mar 31 2020 07:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 13 13 N 1.46898 * 109.47123 * 299.99884 * 12 2 1 14 14 C 1.46902 * 111.00157 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.47003 * 325.00732 * 14 13 12 16 16 C 1.50700 * 109.46553 * 85.00214 * 14 13 12 17 17 O 1.20826 * 120.00533 * 0.02562 * 16 14 13 18 18 O 1.34232 * 119.99932 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47167 * 205.00234 * 14 13 12 20 20 C 1.38221 * 120.01503 * 340.00029 * 19 14 13 21 21 C 1.38224 * 120.02543 * 179.97438 * 20 19 14 22 22 C 1.38262 * 120.04923 * 0.02562 * 21 20 19 23 23 C 1.38171 * 120.03154 * 0.02562 * 22 21 20 24 24 C 1.38441 * 120.01062 * 159.72894 * 19 14 13 25 25 F 1.35093 * 120.02474 * 359.97438 * 24 19 14 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 12 2 1 35 35 H 1.00909 * 110.99894 * 56.04959 * 13 12 2 36 36 H 0.96700 * 117.00150 * 179.97438 * 18 16 14 37 37 H 1.07999 * 119.98823 * 0.02562 * 20 19 14 38 38 H 1.08003 * 119.97266 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.98392 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.01863 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1124 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0209 -0.6954 3.6703 15 1 2.0601 -1.7720 3.5047 16 6 3.3972 -0.1905 4.0195 17 8 3.9312 0.6397 3.3227 18 8 4.0301 -0.6631 5.1049 19 6 1.0734 -0.3954 4.8030 20 6 0.2264 0.6942 4.7257 21 6 -0.6432 0.9693 5.7643 22 6 -0.6666 0.1553 6.8817 23 6 0.1798 -0.9338 6.9617 24 6 1.0468 -1.2143 5.9189 25 9 1.8699 -2.2830 5.9928 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 0.7094 1.1619 -3.4844 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 0.5438 0.0412 2.4401 36 1 4.9113 -0.3095 5.2880 37 1 0.2435 1.3304 3.8532 38 1 -1.3049 1.8206 5.7029 39 1 -1.3462 0.3715 7.6928 40 1 0.1617 -1.5692 7.8348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609672800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:52 Heat of formation + Delta-G solvation = -103.124563 kcal Electronic energy + Delta-G solvation = -24383.798427 eV Core-core repulsion = 20692.254294 eV Total energy + Delta-G solvation = -3691.544134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.92094 -40.31010 -38.98463 -37.01319 -35.74792 -34.47435 -31.81252 -30.69291 -30.07546 -26.96633 -25.57476 -25.20614 -24.03254 -22.83695 -22.36982 -20.55956 -18.64317 -18.01645 -17.57232 -16.62735 -16.44487 -16.31146 -15.74962 -15.40063 -15.10604 -14.97120 -14.34310 -14.14096 -13.85574 -13.54262 -13.13261 -12.88344 -12.66429 -12.50942 -12.27659 -11.95250 -11.73447 -11.33659 -11.16748 -11.06183 -11.01906 -10.63733 -10.58565 -10.39400 -10.18583 -10.03033 -9.38565 -9.19367 -9.06695 -8.77504 -8.62985 -8.28447 -7.97989 -5.90134 -4.00189 0.93232 1.06466 2.47680 3.07524 3.32605 3.39698 3.43143 3.49986 4.11888 4.34578 4.43517 4.52425 4.71767 4.84907 5.10923 5.19678 5.33666 5.35667 5.49088 5.67476 5.91242 5.94588 6.16787 6.22884 6.26029 6.30944 6.65834 6.69034 6.73958 6.85948 7.02535 7.17135 7.32766 7.44000 7.60938 7.74588 7.77459 7.84363 8.17946 8.22768 8.34642 8.56088 9.00343 9.64550 11.10531 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.004159 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.860978 B = 6731.421417 C = 7207.348350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.072 3.928 3 C -0.116 4.116 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.073 3.927 13 N -0.662 5.662 14 C 0.142 3.858 15 H 0.088 0.912 16 C 0.480 3.520 17 O -0.476 6.476 18 O -0.520 6.520 19 C -0.128 4.128 20 C -0.070 4.070 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.161 4.161 24 C 0.121 3.879 25 F -0.129 7.129 26 H 0.085 0.915 27 H 0.020 0.980 28 H 0.009 0.991 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.073 0.927 32 H 0.258 0.742 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.352 0.648 36 H 0.405 0.595 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -1.692 19.312 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 C -0.174 4.174 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.054 4.054 13 N -0.298 5.298 14 C 0.030 3.970 15 H 0.105 0.895 16 C 0.318 3.682 17 O -0.360 6.360 18 O -0.332 6.332 19 C -0.130 4.130 20 C -0.088 4.088 21 C -0.151 4.151 22 C -0.106 4.106 23 C -0.180 4.180 24 C 0.101 3.899 25 F -0.108 7.108 26 H 0.104 0.896 27 H 0.039 0.961 28 H 0.028 0.972 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.263 0.737 37 H 0.167 0.833 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.523 -1.070 18.853 19.051 hybrid contribution 0.608 -1.298 -0.721 1.604 sum -1.915 -2.367 18.133 18.386 Atomic orbital electron populations 1.21862 0.98482 0.98453 1.00320 1.18078 0.92015 0.93283 0.89535 1.21606 0.98149 0.97778 0.99879 1.21073 1.31184 1.11822 0.90403 0.93011 1.24867 0.95050 0.94921 0.98656 1.69832 1.36878 1.22664 1.22914 0.86649 0.79206 0.79402 0.83017 1.20876 1.21291 1.20075 1.22337 0.99650 0.94234 0.89189 1.60308 1.16621 1.53505 0.99385 1.19628 0.87870 0.98566 0.90978 0.89474 1.23240 0.87868 0.79394 0.77651 1.90752 1.66146 1.29671 1.49425 1.84559 1.35616 1.66991 1.46025 1.19683 1.00263 0.97802 0.95204 1.21179 0.93038 0.95125 0.99470 1.21248 0.99648 1.00413 0.93745 1.21060 0.97642 0.93778 0.98142 1.21100 0.97910 1.00259 0.98710 1.17509 0.91449 0.85768 0.95171 1.91523 1.70100 1.52815 1.96339 0.89618 0.96080 0.97193 0.96151 0.96065 0.90837 0.93191 0.96319 0.91952 0.82380 0.73724 0.83334 0.84989 0.85061 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 7.92 37.16 0.29 -2.78 16 2 C 0.07 1.73 0.57 -155.66 -0.09 1.65 16 3 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 4 C -0.51 -13.71 8.01 -34.44 -0.28 -13.99 16 5 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.47 9.35 55.43 0.52 -23.95 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.07 1.56 4.28 -3.83 -0.02 1.54 16 13 N -0.66 -11.81 4.35 -109.19 -0.48 -12.28 16 14 C 0.14 2.21 2.47 -70.02 -0.17 2.04 16 15 H 0.09 1.35 7.59 -51.93 -0.39 0.96 16 16 C 0.48 7.83 7.49 36.01 0.27 8.10 16 17 O -0.48 -9.47 16.68 -18.75 -0.31 -9.78 16 18 O -0.52 -6.69 12.43 -39.26 -0.49 -7.17 16 19 C -0.13 -1.72 4.96 -104.56 -0.52 -2.23 16 20 C -0.07 -0.85 8.87 -39.59 -0.35 -1.20 16 21 C -0.13 -1.27 10.04 -39.58 -0.40 -1.67 16 22 C -0.09 -0.76 10.04 -39.60 -0.40 -1.16 16 23 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 24 C 0.12 1.50 6.98 -39.42 -0.28 1.23 16 25 F -0.13 -1.73 15.99 2.25 0.04 -1.69 16 26 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 29 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 33 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.06 1.42 7.62 -51.93 -0.40 1.03 16 35 H 0.35 5.88 5.01 -39.29 -0.20 5.68 16 36 H 0.40 3.43 9.10 45.56 0.41 3.84 16 37 H 0.15 1.88 6.70 -52.49 -0.35 1.53 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -31.05 331.48 -7.23 -38.28 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.36 Total: 6.72 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.12 Total: -11.37 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.04 Total: -36.23 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.80 Total: -16.95 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.05 -7.23 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.842 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds