Wall clock time and date at job start Tue Mar 31 2020 07:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 13 13 N 1.46898 * 109.47123 * 299.99884 * 12 2 1 14 14 C 1.46902 * 111.00157 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.47003 * 325.00732 * 14 13 12 16 16 C 1.50700 * 109.46553 * 85.00214 * 14 13 12 17 17 O 1.20826 * 120.00533 * 0.02562 * 16 14 13 18 18 O 1.34232 * 119.99932 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47167 * 205.00234 * 14 13 12 20 20 C 1.38221 * 120.01503 * 340.00029 * 19 14 13 21 21 C 1.38224 * 120.02543 * 179.97438 * 20 19 14 22 22 C 1.38262 * 120.04923 * 0.02562 * 21 20 19 23 23 C 1.38171 * 120.03154 * 0.02562 * 22 21 20 24 24 C 1.38441 * 120.01062 * 159.72894 * 19 14 13 25 25 F 1.35093 * 120.02474 * 359.97438 * 24 19 14 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 12 2 1 35 35 H 1.00909 * 110.99894 * 56.04959 * 13 12 2 36 36 H 0.96700 * 117.00150 * 179.97438 * 18 16 14 37 37 H 1.07999 * 119.98823 * 0.02562 * 20 19 14 38 38 H 1.08003 * 119.97266 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.98392 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.01863 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1124 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0209 -0.6954 3.6703 15 1 2.0601 -1.7720 3.5047 16 6 3.3972 -0.1905 4.0195 17 8 3.9312 0.6397 3.3227 18 8 4.0301 -0.6631 5.1049 19 6 1.0734 -0.3954 4.8030 20 6 0.2264 0.6942 4.7257 21 6 -0.6432 0.9693 5.7643 22 6 -0.6666 0.1553 6.8817 23 6 0.1798 -0.9338 6.9617 24 6 1.0468 -1.2143 5.9189 25 9 1.8699 -2.2830 5.9928 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 0.7094 1.1619 -3.4844 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 0.5438 0.0412 2.4401 36 1 4.9113 -0.3095 5.2880 37 1 0.2435 1.3304 3.8532 38 1 -1.3049 1.8206 5.7029 39 1 -1.3462 0.3715 7.6928 40 1 0.1617 -1.5692 7.8348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609672800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:51 Heat of formation + Delta-G solvation = -122.082472 kcal Electronic energy + Delta-G solvation = -24384.620504 eV Core-core repulsion = 20692.254294 eV Total energy + Delta-G solvation = -3692.366210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85730 -41.53118 -39.93502 -38.60812 -37.05986 -35.97931 -33.51103 -31.53613 -31.45122 -28.20890 -27.50373 -27.26909 -25.65726 -23.78093 -23.33576 -21.73104 -20.44056 -19.22545 -18.60009 -17.99860 -17.75997 -17.45722 -17.16363 -16.71173 -16.39320 -16.14016 -15.86796 -15.34749 -15.05815 -14.95151 -14.43193 -14.16707 -14.13165 -13.96473 -13.59058 -13.22614 -13.10276 -12.97877 -12.64761 -12.60050 -12.54904 -12.33098 -12.13021 -12.08467 -12.03492 -11.68867 -11.34574 -11.02816 -10.62637 -10.34489 -9.96194 -9.64603 -9.46432 -7.97344 -6.13866 0.08926 0.25874 1.20884 1.41630 1.43898 1.52360 1.95834 2.45948 2.66000 3.12117 3.24885 3.32674 3.38201 3.88203 3.95884 4.16767 4.32763 4.40406 4.47095 4.49261 4.55675 4.83498 4.87533 4.98068 5.12313 5.13886 5.17839 5.27001 5.35270 5.41005 5.47559 5.52362 5.59944 5.69258 5.76417 5.90054 5.95001 6.16598 6.30821 6.38668 6.52246 6.93376 7.03210 7.53175 9.01077 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.004159 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.860978 B = 6731.421417 C = 7207.348350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.063 3.937 3 C -0.100 4.100 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.090 3.910 13 N -0.662 5.662 14 C 0.141 3.859 15 H 0.087 0.913 16 C 0.486 3.514 17 O -0.521 6.521 18 O -0.508 6.508 19 C -0.145 4.145 20 C -0.086 4.086 21 C -0.127 4.127 22 C -0.076 4.076 23 C -0.156 4.156 24 C 0.102 3.898 25 F -0.140 7.140 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.000 1.000 31 H 0.051 0.949 32 H 0.258 0.742 33 H 0.021 0.979 34 H 0.040 0.960 35 H 0.359 0.641 36 H 0.425 0.575 37 H 0.137 0.863 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -1.975 21.497 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 C -0.158 4.158 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 C -0.038 4.038 13 N -0.299 5.299 14 C 0.030 3.970 15 H 0.104 0.896 16 C 0.326 3.674 17 O -0.408 6.408 18 O -0.322 6.322 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.093 4.093 23 C -0.175 4.175 24 C 0.082 3.918 25 F -0.119 7.119 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.184 0.816 36 H 0.286 0.714 37 H 0.155 0.845 38 H 0.176 0.824 39 H 0.187 0.813 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.831 -1.365 21.073 21.462 hybrid contribution 1.011 -1.191 -1.266 2.011 sum -2.820 -2.557 19.807 20.170 Atomic orbital electron populations 1.21671 0.97405 0.98494 1.00342 1.18109 0.92873 0.92645 0.90123 1.21421 0.96578 0.98495 0.99293 1.21382 1.31411 1.11941 0.91973 0.93972 1.25501 0.95300 0.95616 1.01044 1.69953 1.37311 1.23362 1.23341 0.85773 0.78634 0.78501 0.79956 1.20147 1.21017 1.20195 1.21935 0.98146 0.94210 0.89552 1.60121 1.17059 1.53512 0.99207 1.19594 0.88388 0.98123 0.90927 0.89562 1.23383 0.87978 0.78477 0.77529 1.90738 1.67217 1.31832 1.51019 1.84511 1.36913 1.66374 1.44369 1.19531 1.00854 0.99263 0.94996 1.21196 0.94016 0.94907 1.00267 1.21576 0.98810 1.01062 0.93011 1.21514 0.97024 0.92322 0.98483 1.21453 0.96819 1.00733 0.98472 1.17740 0.92430 0.85734 0.95851 1.91491 1.70637 1.53344 1.96431 0.92258 0.95935 0.94402 0.94805 0.98100 0.93064 0.93232 0.96070 0.94178 0.81609 0.71413 0.84485 0.82444 0.81268 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 7.92 71.98 0.57 -5.02 16 2 C 0.06 3.11 0.57 -52.93 -0.03 3.08 16 3 C -0.10 -5.12 8.09 71.98 0.58 -4.54 16 4 C -0.53 -29.17 8.01 25.60 0.21 -28.97 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.02 1.36 5.15 84.65 0.44 1.79 16 7 N -0.90 -50.51 9.35 21.45 0.20 -50.31 16 8 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.09 3.89 4.28 86.30 0.37 4.25 16 13 N -0.66 -23.74 4.35 -499.38 -2.17 -25.91 16 14 C 0.14 4.42 2.47 43.42 0.11 4.53 16 15 H 0.09 2.70 7.59 -2.39 -0.02 2.68 16 16 C 0.49 15.93 7.49 71.24 0.53 16.46 16 17 O -0.52 -21.16 16.68 21.96 0.37 -20.80 16 18 O -0.51 -12.69 12.43 -51.43 -0.64 -13.33 16 19 C -0.14 -3.74 4.96 -19.82 -0.10 -3.83 16 20 C -0.09 -1.94 8.87 22.26 0.20 -1.74 16 21 C -0.13 -2.01 10.04 22.27 0.22 -1.79 16 22 C -0.08 -0.98 10.04 22.26 0.22 -0.76 16 23 C -0.16 -2.55 10.03 22.31 0.22 -2.33 16 24 C 0.10 2.36 6.98 22.38 0.16 2.52 16 25 F -0.14 -3.59 15.99 44.97 0.72 -2.87 16 26 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.04 1.48 6.57 -2.39 -0.02 1.47 16 29 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 30 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 34 H 0.04 1.89 7.62 -2.39 -0.02 1.87 16 35 H 0.36 11.82 5.01 -89.69 -0.45 11.37 16 36 H 0.42 6.75 9.10 -74.06 -0.67 6.08 16 37 H 0.14 3.36 6.70 -2.91 -0.02 3.34 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -68.10 331.48 4.16 -63.94 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.04 Total: 19.59 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 3.70 Total: -16.34 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -1.97 Total: -76.22 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.27 Total: -34.13 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.72 Total: -2.87 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.10 4.16 -63.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.142 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds