Wall clock time and date at job start Tue Mar 31 2020 07:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47323 * 2 1 4 4 C 1.50694 * 109.47325 * 239.99350 * 2 1 3 5 5 H 1.08000 * 120.00586 * 241.24679 * 4 2 1 6 6 C 1.37875 * 119.99889 * 61.24392 * 4 2 1 7 7 N 1.31521 * 120.00023 * 194.11582 * 6 4 2 8 8 Si 1.86806 * 120.00227 * 14.11267 * 6 4 2 9 9 H 1.48492 * 109.46871 * 84.53127 * 8 6 4 10 10 H 1.48498 * 109.47290 * 204.53354 * 8 6 4 11 11 H 1.48506 * 109.46668 * 324.53581 * 8 6 4 12 12 C 1.53006 * 109.46723 * 119.99748 * 2 1 3 13 13 N 1.46899 * 109.47007 * 299.99455 * 12 2 1 14 14 C 1.46904 * 111.00069 * 180.02562 * 13 12 2 15 15 H 1.09004 * 109.46731 * 35.00331 * 14 13 12 16 16 C 1.50701 * 109.47284 * 275.00407 * 14 13 12 17 17 O 1.20833 * 119.99720 * 0.02562 * 16 14 13 18 18 O 1.34227 * 120.00027 * 179.97438 * 16 14 13 19 19 C 1.50705 * 109.47145 * 155.00360 * 14 13 12 20 20 C 1.38218 * 120.00981 * 25.00034 * 19 14 13 21 21 C 1.38226 * 120.02348 * 179.97438 * 20 19 14 22 22 C 1.38266 * 120.04788 * 0.02562 * 21 20 19 23 23 C 1.38175 * 120.02832 * 0.26829 * 22 21 20 24 24 C 1.38428 * 120.00986 * 204.98191 * 19 14 13 25 25 F 1.35093 * 120.03143 * 0.04050 * 24 19 14 26 26 H 1.09004 * 109.47276 * 309.52172 * 1 2 3 27 27 H 1.09002 * 109.47181 * 69.51892 * 1 2 3 28 28 H 1.08998 * 109.47258 * 189.51806 * 1 2 3 29 29 H 1.09001 * 109.47147 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46386 * 299.99587 * 3 2 1 31 31 H 1.08990 * 109.47563 * 59.99067 * 3 2 1 32 32 H 0.97001 * 120.00011 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46785 * 180.02562 * 12 2 1 34 34 H 1.08989 * 109.47443 * 60.00114 * 12 2 1 35 35 H 1.00905 * 110.99906 * 56.05176 * 13 12 2 36 36 H 0.96702 * 116.99561 * 179.97438 * 18 16 14 37 37 H 1.07998 * 119.99309 * 0.02562 * 20 19 14 38 38 H 1.08000 * 119.97162 * 179.97438 * 21 20 19 39 39 H 1.08007 * 119.98091 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00930 * 179.72512 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6365 -1.6002 -1.1313 6 6 1.7206 -0.2248 -2.4824 7 7 1.9117 -0.9755 -3.5453 8 14 1.0266 1.4995 -2.6694 9 1 2.1413 2.4796 -2.7120 10 1 0.2443 1.5844 -3.9287 11 1 0.1426 1.8049 -1.5158 12 6 2.0399 -0.7212 1.2494 13 7 1.5503 -0.0286 2.4487 14 6 2.0217 -0.6943 3.6704 15 1 3.0238 -1.0901 3.5050 16 6 1.0869 -1.8236 4.0199 17 8 0.1268 -2.0509 3.3223 18 8 1.3215 -2.5776 5.1053 19 6 2.0546 0.2992 4.8031 20 6 1.2320 1.4096 4.7729 21 6 1.2616 2.3207 5.8119 22 6 2.1143 2.1229 6.8822 23 6 2.9420 1.0168 6.9116 24 6 2.9085 0.0999 5.8743 25 9 3.7133 -0.9847 5.9047 26 1 -0.3634 0.6540 0.7927 27 1 -0.3634 0.3596 -0.9627 28 1 -0.3634 -1.0135 0.1699 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6766 1.9564 0.8898 32 1 1.6927 -0.6337 -4.4263 33 1 3.1299 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 0.5437 0.0415 2.4402 36 1 0.6940 -3.2900 5.2888 37 1 0.5653 1.5649 3.9376 38 1 0.6188 3.1883 5.7872 39 1 2.1369 2.8358 7.6932 40 1 3.6111 0.8649 7.7456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609672801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:54 Heat of formation + Delta-G solvation = -112.877965 kcal Electronic energy + Delta-G solvation = -24473.179627 eV Core-core repulsion = 20781.212554 eV Total energy + Delta-G solvation = -3691.967073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.83240 -41.76476 -39.84615 -38.87150 -37.27482 -35.95840 -33.89000 -31.93900 -31.41914 -28.35802 -27.93564 -27.11827 -25.77433 -23.82940 -23.36551 -21.74844 -20.75406 -19.29357 -18.58559 -18.38959 -18.05014 -17.47154 -17.39507 -16.96866 -16.46769 -16.32345 -15.64631 -15.24190 -15.06975 -14.97907 -14.80622 -14.47475 -14.22630 -14.03792 -13.75342 -13.69491 -13.59715 -13.14250 -12.87323 -12.67158 -12.43638 -12.32953 -12.20610 -11.98181 -11.89230 -11.75600 -11.67239 -10.97119 -10.59160 -10.33768 -9.88230 -9.76170 -9.55785 -8.29217 -6.28941 0.15933 0.32958 1.00419 1.37938 1.39300 1.51325 1.97317 2.36586 2.68384 2.97804 3.08337 3.36668 3.49526 3.83660 3.98629 4.16833 4.19532 4.24231 4.38405 4.47805 4.51828 4.56351 4.74576 4.89777 4.91313 4.93912 5.04093 5.16982 5.19306 5.23234 5.27207 5.41842 5.43198 5.52598 5.55116 5.69088 5.80928 5.87847 5.99901 6.15793 6.36720 6.75875 6.82932 7.36128 8.88057 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.004537 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.832662 B = 6169.331034 C = 6753.127835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.038 3.962 3 C -0.132 4.132 4 C -0.514 4.514 5 H 0.027 0.973 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.317 1.317 11 H -0.211 1.211 12 C 0.092 3.908 13 N -0.641 5.641 14 C 0.137 3.863 15 H 0.121 0.879 16 C 0.460 3.540 17 O -0.538 6.538 18 O -0.504 6.504 19 C -0.125 4.125 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.080 4.080 23 C -0.159 4.159 24 C 0.097 3.903 25 F -0.144 7.144 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.010 0.990 35 H 0.353 0.647 36 H 0.424 0.576 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 7.412 25.519 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.037 3.963 3 C -0.189 4.189 4 C -0.553 4.553 5 H 0.045 0.955 6 C -0.181 4.181 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.208 1.208 10 H -0.246 1.246 11 H -0.135 1.135 12 C -0.037 4.037 13 N -0.273 5.273 14 C 0.024 3.976 15 H 0.138 0.862 16 C 0.301 3.699 17 O -0.428 6.428 18 O -0.316 6.316 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.098 4.098 23 C -0.178 4.178 24 C 0.078 3.922 25 F -0.123 7.123 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.175 0.825 36 H 0.285 0.715 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.026 8.036 25.082 26.357 hybrid contribution -0.760 -1.637 -1.052 2.089 sum -1.786 6.398 24.030 24.931 Atomic orbital electron populations 1.22195 0.97234 0.99735 1.00466 1.18425 0.92784 0.93368 0.91689 1.22108 1.00433 0.96678 0.99635 1.21152 1.32425 1.10873 0.90827 0.95503 1.25830 0.95467 1.01465 0.95327 1.70121 1.51170 1.38191 0.99362 0.86303 0.79368 0.80265 0.76472 1.20847 1.24640 1.13533 1.21814 0.99055 0.94185 0.88623 1.60996 1.17977 1.49142 0.99232 1.20112 0.98394 0.88157 0.90926 0.86159 1.24826 0.84823 0.82801 0.77451 1.90753 1.30977 1.69782 1.51306 1.84569 1.57074 1.45840 1.44117 1.19345 1.00713 0.98400 0.94171 1.21092 0.96941 0.92222 0.98906 1.21564 1.00011 0.99943 0.93325 1.21465 0.93259 0.96275 0.98775 1.21406 1.02768 0.95057 0.98565 1.17747 0.92160 0.85796 0.96530 1.91479 1.71327 1.52947 1.96514 0.92063 0.93938 0.95001 0.93782 0.95778 0.90617 0.92811 0.91648 0.97147 0.82496 0.71480 0.84560 0.82616 0.81665 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 7.24 71.98 0.52 -5.35 16 2 C 0.04 1.72 0.57 -52.93 -0.03 1.69 16 3 C -0.13 -5.35 7.54 71.98 0.54 -4.81 16 4 C -0.51 -29.32 8.62 25.60 0.22 -29.10 16 5 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 6 C 0.02 0.94 5.32 84.65 0.45 1.39 16 7 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 8 Si 0.95 45.16 22.79 68.60 1.56 46.72 16 9 H -0.28 -13.09 7.10 99.48 0.71 -12.38 16 10 H -0.32 -15.47 7.11 99.48 0.71 -14.76 16 11 H -0.21 -8.84 4.65 99.48 0.46 -8.37 16 12 C 0.09 3.64 4.26 86.31 0.37 4.01 16 13 N -0.64 -20.07 4.32 -499.34 -2.16 -22.23 16 14 C 0.14 3.82 2.49 43.42 0.11 3.93 16 15 H 0.12 3.45 7.45 -2.38 -0.02 3.43 16 16 C 0.46 13.13 7.45 71.24 0.53 13.66 16 17 O -0.54 -18.67 16.06 21.94 0.35 -18.32 16 18 O -0.50 -11.21 13.26 -51.39 -0.68 -11.90 16 19 C -0.12 -2.95 4.99 -19.82 -0.10 -3.05 16 20 C -0.07 -1.49 9.32 22.26 0.21 -1.28 16 21 C -0.13 -1.89 10.04 22.27 0.22 -1.66 16 22 C -0.08 -0.99 10.04 22.26 0.22 -0.77 16 23 C -0.16 -2.54 10.03 22.31 0.22 -2.31 16 24 C 0.10 2.15 7.19 22.37 0.16 2.31 16 25 F -0.14 -3.57 16.53 44.97 0.74 -2.82 16 26 H 0.06 2.14 7.06 -2.38 -0.02 2.12 16 27 H 0.04 1.87 4.30 -2.39 -0.01 1.86 16 28 H 0.03 1.39 8.12 -2.39 -0.02 1.37 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.02 1.01 2.26 -2.38 -0.01 1.01 16 31 H 0.08 2.58 7.60 -2.39 -0.02 2.56 16 32 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.07 2.61 8.05 -2.39 -0.02 2.59 16 34 H 0.01 0.45 7.62 -2.39 -0.02 0.43 16 35 H 0.35 11.06 5.44 -89.69 -0.49 10.58 16 36 H 0.42 5.71 9.10 -74.06 -0.67 5.04 16 37 H 0.14 2.78 6.89 -2.91 -0.02 2.76 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -72.70 323.38 3.46 -69.25 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.31 Total: 20.72 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 3.65 Total: -21.32 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.86 Total: -82.33 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.33 Total: -30.22 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.74 Total: -2.82 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.56 Total: 46.72 kcal Total: -72.70 3.46 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.629 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds