Wall clock time and date at job start Tue Mar 31 2020 07:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 C 1.53000 * 109.46921 * 120.00016 * 2 1 3 5 5 H 1.09003 * 109.47255 * 60.00284 * 4 2 1 6 6 N 1.46501 * 109.47341 * 300.00013 * 4 2 1 7 7 C 1.34773 * 119.99932 * 85.00031 * 6 4 2 8 8 N 1.34782 * 120.00125 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00308 * 0.02562 * 7 6 4 10 10 C 1.50705 * 109.47039 * 180.02562 * 4 2 1 11 11 O 1.21299 * 119.99726 * 120.00448 * 10 4 2 12 12 N 1.34777 * 119.99695 * 299.99579 * 10 4 2 13 13 C 1.40597 * 119.99674 * 179.97438 * 12 10 4 14 14 C 1.40648 * 126.08199 * 359.97438 * 13 12 10 15 15 N 1.30907 * 108.38289 * 179.77574 * 14 13 12 16 16 N 1.40067 * 108.41135 * 0.38341 * 15 14 13 17 17 C 1.37320 * 126.07294 * 179.87911 * 16 15 14 18 18 H 1.08002 * 120.00430 * 179.69232 * 17 16 15 19 19 C 1.38992 * 119.99664 * 359.41108 * 17 16 15 20 20 N 1.31294 * 120.00157 * 0.27652 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.27798 * 19 17 16 22 22 H 1.48506 * 109.47253 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99952 * 21 19 17 24 24 H 1.48498 * 109.47018 * 239.99998 * 21 19 17 25 25 C 1.35682 * 126.07675 * 180.02562 * 13 12 10 26 26 H 1.09000 * 109.47262 * 60.00350 * 1 2 3 27 27 H 1.09006 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47469 * 299.99879 * 1 2 3 29 29 H 1.08996 * 109.46995 * 240.00123 * 2 1 3 30 30 H 1.08995 * 109.47169 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47112 * 300.00244 * 3 2 1 32 32 H 1.09009 * 109.46935 * 59.99930 * 3 2 1 33 33 H 0.97001 * 119.99852 * 265.00335 * 6 4 2 34 34 H 0.97001 * 119.99658 * 0.02562 * 8 7 6 35 35 H 0.97001 * 120.00235 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99849 * 0.02562 * 12 10 4 37 37 H 1.08000 * 125.80726 * 0.02562 * 14 13 12 38 38 H 0.96996 * 120.00263 * 179.97438 * 20 19 17 39 39 H 1.07994 * 126.25033 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7490 1.2492 6 7 1.5516 -0.0307 2.4454 7 6 0.3296 -0.3165 2.9369 8 7 -0.1199 0.3192 4.0371 9 8 -0.3673 -1.1478 2.3878 10 6 3.5470 -0.7207 1.2496 11 8 4.1530 -0.1955 2.1596 12 7 4.2212 -1.3040 0.2388 13 6 5.6272 -1.3031 0.2389 14 6 6.4551 -0.7336 1.2230 15 7 7.7024 -0.9361 0.8809 16 7 7.7203 -1.6322 -0.3344 17 6 8.8405 -2.0294 -1.0222 18 1 8.7401 -2.5680 -1.9529 19 6 10.1036 -1.7332 -0.5235 20 7 10.2257 -1.0783 0.6079 21 14 11.6275 -2.2667 -1.4630 22 1 11.2215 -2.9840 -2.6984 23 1 12.4295 -1.0706 -1.8255 24 1 12.4427 -3.1700 -0.6119 25 6 6.4266 -1.8505 -0.7109 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 2.1077 0.6323 2.8837 34 1 0.4360 0.9827 4.4749 35 1 -0.9995 0.1137 4.3906 36 1 3.7365 -1.7238 -0.4889 37 1 6.1190 -0.2204 2.1118 38 1 11.1072 -0.8719 0.9562 39 1 6.0991 -2.3646 -1.6024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626936245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:38 Heat of formation + Delta-G solvation = 13.292369 kcal Electronic energy + Delta-G solvation = -23899.345978 eV Core-core repulsion = 20265.062774 eV Total energy + Delta-G solvation = -3634.283204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69837 -39.70474 -38.62085 -36.04997 -34.39673 -33.89814 -33.18035 -32.39025 -30.28614 -28.44627 -27.11888 -26.76843 -24.71628 -21.66107 -21.44551 -20.72059 -19.76445 -19.33123 -18.57687 -17.55108 -17.34178 -16.41613 -15.85623 -15.47551 -15.44817 -14.76463 -14.68076 -14.30850 -14.02074 -13.88030 -13.47872 -13.40123 -12.93056 -12.80984 -12.23320 -12.03033 -11.70039 -11.49053 -11.40382 -11.28298 -11.05841 -10.92622 -10.88225 -10.52232 -10.30937 -10.21463 -9.75406 -9.35731 -9.20015 -8.97453 -8.82105 -8.08482 -6.73588 -6.57770 -4.24945 2.70087 2.73944 2.99065 3.04359 3.10112 3.14684 3.59785 3.65223 3.86061 4.37770 4.40454 4.63816 4.74909 4.90865 5.00480 5.01334 5.22283 5.46653 5.60468 5.69396 5.87862 5.95739 6.01812 6.21955 6.24897 6.37502 6.37638 6.43749 6.61065 6.80674 6.86993 6.92753 7.07105 7.21051 7.83642 7.88786 8.11179 8.24617 8.54856 8.57999 8.77673 9.35555 9.64619 10.38258 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.003151 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.277541 B = 8883.880138 C = 9218.732949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C -0.148 4.148 4 C 0.154 3.846 5 H 0.111 0.889 6 N -0.721 5.721 7 C 0.709 3.291 8 N -0.869 5.869 9 O -0.594 6.594 10 C 0.498 3.502 11 O -0.535 6.535 12 N -0.616 5.616 13 C -0.061 4.061 14 C -0.032 4.032 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.117 0.883 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.935 3.065 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.082 4.082 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.406 0.594 34 H 0.397 0.603 35 H 0.413 0.587 36 H 0.398 0.602 37 H 0.175 0.825 38 H 0.274 0.726 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 3.163 0.381 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 C -0.206 4.206 4 C 0.044 3.956 5 H 0.129 0.871 6 N -0.378 5.378 7 C 0.408 3.592 8 N -0.437 5.437 9 O -0.473 6.473 10 C 0.283 3.717 11 O -0.412 6.412 12 N -0.258 5.258 13 C -0.166 4.166 14 C -0.208 4.208 15 N -0.092 5.092 16 N 0.090 4.910 17 C -0.455 4.455 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.396 5.396 21 Si 0.758 3.242 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.233 4.233 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.225 0.775 35 H 0.245 0.755 36 H 0.232 0.768 37 H 0.192 0.808 38 H 0.085 0.915 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.555 3.078 0.927 14.906 hybrid contribution -0.279 -0.057 -0.458 0.539 sum -14.834 3.021 0.469 15.146 Atomic orbital electron populations 1.21833 0.93583 1.02686 1.01029 1.21535 0.97308 0.97125 0.96296 1.21837 1.01591 0.95387 1.01750 1.20653 0.90929 0.98620 0.85371 0.87123 1.44693 1.16984 1.45609 1.30513 1.15804 0.81700 0.81247 0.80478 1.42957 1.22888 1.46818 1.31027 1.90963 1.57493 1.37057 1.61746 1.20204 0.88769 0.79979 0.82706 1.90583 1.69060 1.45682 1.35923 1.42395 1.04949 1.55051 1.23408 1.17253 0.81135 1.16494 1.01763 1.24087 0.89978 1.05651 1.01050 1.78256 1.17074 1.16477 0.97367 1.44556 1.02985 1.30515 1.12918 1.19927 0.82014 1.37457 1.06100 0.86550 1.25644 0.99771 0.95637 0.96051 1.70222 1.24729 1.28789 1.15888 0.85765 0.80144 0.78793 0.79451 1.18677 1.19916 1.19916 1.21271 0.85224 1.14089 1.02720 0.93444 0.91690 0.92624 0.89941 0.92079 0.92475 0.92638 0.75708 0.77494 0.75484 0.76820 0.80791 0.91517 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 7.71 37.16 0.29 -1.19 16 2 C -0.10 -1.13 2.70 -90.62 -0.25 -1.38 16 3 C -0.15 -1.68 8.79 37.16 0.33 -1.36 16 4 C 0.15 1.97 2.42 -69.08 -0.17 1.80 16 5 H 0.11 1.45 7.58 -51.93 -0.39 1.05 16 6 N -0.72 -8.49 4.08 -59.81 -0.24 -8.73 16 7 C 0.71 8.39 7.19 -86.92 -0.63 7.76 16 8 N -0.87 -6.63 8.88 27.63 0.25 -6.39 16 9 O -0.59 -8.90 14.30 5.29 0.08 -8.82 16 10 C 0.50 8.13 5.93 -10.98 -0.07 8.07 16 11 O -0.53 -10.43 12.99 5.54 0.07 -10.36 16 12 N -0.62 -10.39 5.36 -10.00 -0.05 -10.44 16 13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 14 C -0.03 -0.82 10.85 -17.04 -0.18 -1.01 16 15 N -0.26 -7.46 10.40 30.80 0.32 -7.14 16 16 N -0.14 -3.85 3.74 -11.41 -0.04 -3.89 16 17 C -0.32 -8.44 10.25 -14.81 -0.15 -8.59 16 18 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -21.31 11.81 55.50 0.66 -20.65 16 21 Si 0.93 18.75 29.55 -169.99 -5.02 13.73 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.78 7.53 -51.93 -0.39 0.39 16 28 H 0.05 0.66 5.78 -51.93 -0.30 0.36 16 29 H 0.08 0.82 7.56 -51.93 -0.39 0.43 16 30 H 0.06 0.83 7.21 -51.93 -0.37 0.46 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.61 7.60 -51.92 -0.39 0.21 16 33 H 0.41 4.60 7.80 -40.82 -0.32 4.28 16 34 H 0.40 2.09 8.84 -40.82 -0.36 1.73 16 35 H 0.41 2.59 8.93 -40.82 -0.36 2.23 16 36 H 0.40 5.24 8.24 -40.82 -0.34 4.90 16 37 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -34.24 325.64 -5.53 -39.76 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -4.75 Total: 16.85 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.69 Total: 1.17 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.88 Total: -57.25 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.15 Total: -19.18 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.24 -5.53 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626936245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.057 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds