Wall clock time and date at job start Tue Mar 31 2020 07:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 C 1.53000 * 109.46921 * 120.00016 * 2 1 3 5 5 H 1.09003 * 109.47255 * 60.00284 * 4 2 1 6 6 N 1.46501 * 109.47341 * 300.00013 * 4 2 1 7 7 C 1.34773 * 119.99932 * 85.00031 * 6 4 2 8 8 N 1.34782 * 120.00125 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00308 * 0.02562 * 7 6 4 10 10 C 1.50705 * 109.47039 * 180.02562 * 4 2 1 11 11 O 1.21299 * 119.99726 * 120.00448 * 10 4 2 12 12 N 1.34777 * 119.99695 * 299.99579 * 10 4 2 13 13 C 1.40597 * 119.99674 * 179.97438 * 12 10 4 14 14 C 1.40648 * 126.08199 * 359.97438 * 13 12 10 15 15 N 1.30907 * 108.38289 * 179.77574 * 14 13 12 16 16 N 1.40067 * 108.41135 * 0.38341 * 15 14 13 17 17 C 1.37320 * 126.07294 * 179.87911 * 16 15 14 18 18 H 1.08002 * 120.00430 * 179.69232 * 17 16 15 19 19 C 1.38992 * 119.99664 * 359.41108 * 17 16 15 20 20 N 1.31294 * 120.00157 * 0.27652 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.27798 * 19 17 16 22 22 H 1.48506 * 109.47253 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99952 * 21 19 17 24 24 H 1.48498 * 109.47018 * 239.99998 * 21 19 17 25 25 C 1.35682 * 126.07675 * 180.02562 * 13 12 10 26 26 H 1.09000 * 109.47262 * 60.00350 * 1 2 3 27 27 H 1.09006 * 109.47427 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47469 * 299.99879 * 1 2 3 29 29 H 1.08996 * 109.46995 * 240.00123 * 2 1 3 30 30 H 1.08995 * 109.47169 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47112 * 300.00244 * 3 2 1 32 32 H 1.09009 * 109.46935 * 59.99930 * 3 2 1 33 33 H 0.97001 * 119.99852 * 265.00335 * 6 4 2 34 34 H 0.97001 * 119.99658 * 0.02562 * 8 7 6 35 35 H 0.97001 * 120.00235 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99849 * 0.02562 * 12 10 4 37 37 H 1.08000 * 125.80726 * 0.02562 * 14 13 12 38 38 H 0.96996 * 120.00263 * 179.97438 * 20 19 17 39 39 H 1.07994 * 126.25033 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7490 1.2492 6 7 1.5516 -0.0307 2.4454 7 6 0.3296 -0.3165 2.9369 8 7 -0.1199 0.3192 4.0371 9 8 -0.3673 -1.1478 2.3878 10 6 3.5470 -0.7207 1.2496 11 8 4.1530 -0.1955 2.1596 12 7 4.2212 -1.3040 0.2388 13 6 5.6272 -1.3031 0.2389 14 6 6.4551 -0.7336 1.2230 15 7 7.7024 -0.9361 0.8809 16 7 7.7203 -1.6322 -0.3344 17 6 8.8405 -2.0294 -1.0222 18 1 8.7401 -2.5680 -1.9529 19 6 10.1036 -1.7332 -0.5235 20 7 10.2257 -1.0783 0.6079 21 14 11.6275 -2.2667 -1.4630 22 1 11.2215 -2.9840 -2.6984 23 1 12.4295 -1.0706 -1.8255 24 1 12.4427 -3.1700 -0.6119 25 6 6.4266 -1.8505 -0.7109 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 2.1077 0.6323 2.8837 34 1 0.4360 0.9827 4.4749 35 1 -0.9995 0.1137 4.3906 36 1 3.7365 -1.7238 -0.4889 37 1 6.1190 -0.2204 2.1118 38 1 11.1072 -0.8719 0.9562 39 1 6.0991 -2.3646 -1.6024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626936245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:37 Heat of formation + Delta-G solvation = -14.774603 kcal Electronic energy + Delta-G solvation = -23900.563053 eV Core-core repulsion = 20265.062774 eV Total energy + Delta-G solvation = -3635.500279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97866 -41.25499 -40.00519 -37.12222 -35.98906 -35.02494 -34.75361 -33.29754 -32.23002 -30.04793 -28.22573 -27.97426 -26.53238 -23.00956 -22.57563 -22.39135 -21.27974 -20.60533 -19.67460 -19.06333 -18.50271 -17.49526 -17.32884 -17.00233 -16.89506 -16.06633 -15.88545 -15.61530 -15.27040 -15.12256 -14.95355 -14.73588 -14.63000 -14.03502 -13.48817 -13.35400 -13.19289 -12.92702 -12.90669 -12.80298 -12.38429 -12.02452 -12.00908 -11.86223 -11.75686 -11.31722 -11.01614 -10.82235 -10.70043 -10.56085 -10.08211 -9.97834 -8.51797 -8.45655 -6.22405 1.19894 1.41068 1.48694 1.59601 1.69821 1.87164 2.12272 2.20718 2.41073 2.53511 2.91272 3.10686 3.59308 3.72839 3.79341 3.99061 4.21765 4.45652 4.50724 4.62250 4.68005 4.83201 4.96172 5.02384 5.05528 5.07670 5.15198 5.30828 5.33006 5.44429 5.46647 5.50593 5.87799 5.97908 6.09819 6.32959 6.69732 6.75639 7.06346 7.32313 7.48276 7.68797 7.70513 8.53869 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.003151 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.277541 B = 8883.880138 C = 9218.732949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.097 4.097 3 C -0.144 4.144 4 C 0.166 3.834 5 H 0.114 0.886 6 N -0.721 5.721 7 C 0.707 3.293 8 N -0.850 5.850 9 O -0.625 6.625 10 C 0.502 3.498 11 O -0.566 6.566 12 N -0.608 5.608 13 C -0.043 4.043 14 C -0.056 4.056 15 N -0.311 5.311 16 N -0.169 5.169 17 C -0.353 4.353 18 H 0.140 0.860 19 C -0.006 4.006 20 N -0.825 5.825 21 Si 1.018 2.982 22 H -0.241 1.241 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.079 4.079 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.411 0.589 35 H 0.422 0.578 36 H 0.420 0.580 37 H 0.170 0.830 38 H 0.276 0.724 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 2.628 -1.276 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.117 4.117 3 C -0.201 4.201 4 C 0.055 3.945 5 H 0.132 0.868 6 N -0.378 5.378 7 C 0.405 3.595 8 N -0.419 5.419 9 O -0.507 6.507 10 C 0.289 3.711 11 O -0.445 6.445 12 N -0.253 5.253 13 C -0.149 4.149 14 C -0.232 4.232 15 N -0.143 5.143 16 N 0.062 4.938 17 C -0.484 4.484 18 H 0.158 0.842 19 C -0.218 4.218 20 N -0.453 5.453 21 Si 0.837 3.163 22 H -0.164 1.164 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.229 4.229 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.241 0.759 35 H 0.256 0.744 36 H 0.257 0.743 37 H 0.187 0.813 38 H 0.085 0.915 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.017 2.555 -0.722 16.236 hybrid contribution -0.040 0.156 0.136 0.211 sum -16.057 2.711 -0.586 16.295 Atomic orbital electron populations 1.21723 0.93010 1.02158 1.01298 1.21546 0.97514 0.96808 0.95822 1.21794 0.99812 0.95846 1.02686 1.20568 0.87713 0.99360 0.86821 0.86826 1.44662 1.17168 1.45543 1.30427 1.15934 0.81338 0.81174 0.81080 1.42787 1.23344 1.46173 1.29595 1.90944 1.58222 1.38563 1.62938 1.20887 0.90236 0.78362 0.81593 1.90575 1.70163 1.46661 1.37091 1.42313 1.02810 1.55574 1.24625 1.17291 0.83451 1.14162 1.00027 1.24176 0.90307 1.06720 1.01963 1.78150 1.18778 1.18201 0.99131 1.44830 1.04523 1.31537 1.12935 1.20636 0.82479 1.38203 1.07105 0.84227 1.26848 1.03211 0.95005 0.96718 1.70397 1.25583 1.31028 1.18276 0.84551 0.75071 0.78255 0.78428 1.16372 1.19819 1.19905 1.22011 0.84070 1.13087 1.03726 0.91829 0.92597 0.93645 0.88248 0.94591 0.90929 0.92441 0.75428 0.75909 0.74419 0.74316 0.81335 0.91475 0.79557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 7.71 71.98 0.56 -1.88 16 2 C -0.10 -1.91 2.70 -10.80 -0.03 -1.94 16 3 C -0.14 -3.00 8.79 71.98 0.63 -2.37 16 4 C 0.17 3.96 2.42 44.25 0.11 4.07 16 5 H 0.11 2.75 7.58 -2.39 -0.02 2.73 16 6 N -0.72 -16.05 4.08 -461.40 -1.88 -17.94 16 7 C 0.71 15.63 7.19 179.05 1.29 16.92 16 8 N -0.85 -11.44 8.88 -184.74 -1.64 -13.08 16 9 O -0.63 -17.85 14.30 -3.99 -0.06 -17.90 16 10 C 0.50 15.92 5.93 87.66 0.52 16.44 16 11 O -0.57 -22.17 12.99 -3.09 -0.04 -22.21 16 12 N -0.61 -19.59 5.36 -303.92 -1.63 -21.22 16 13 C -0.04 -1.90 6.90 37.73 0.26 -1.64 16 14 C -0.06 -2.97 10.85 85.42 0.93 -2.04 16 15 N -0.31 -18.42 10.40 -56.47 -0.59 -19.01 16 16 N -0.17 -9.25 3.74 -190.01 -0.71 -9.96 16 17 C -0.35 -18.49 10.25 84.01 0.86 -17.63 16 18 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 19 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 20 N -0.82 -47.28 11.81 21.66 0.26 -47.03 16 21 Si 1.02 38.32 29.55 68.60 2.03 40.35 16 22 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 25 C -0.08 -3.53 11.49 83.37 0.96 -2.57 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.22 7.53 -2.38 -0.02 1.20 16 28 H 0.04 0.99 5.78 -2.39 -0.01 0.97 16 29 H 0.10 1.65 7.56 -2.39 -0.02 1.63 16 30 H 0.03 0.93 7.21 -2.39 -0.02 0.92 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.16 7.60 -2.38 -0.02 1.14 16 33 H 0.41 8.86 7.80 -92.71 -0.72 8.14 16 34 H 0.41 3.54 8.84 -92.71 -0.82 2.72 16 35 H 0.42 4.49 8.93 -92.71 -0.83 3.66 16 36 H 0.42 9.89 8.24 -92.71 -0.76 9.13 16 37 H 0.17 8.90 5.92 -2.91 -0.02 8.88 16 38 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.19 6.56 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -77.09 325.64 0.29 -76.80 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -1.99 Total: 43.70 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.55 Total: 7.49 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -6.19 Total: -128.23 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.10 Total: -40.11 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -77.09 0.29 -76.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626936245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.024 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds