Wall clock time and date at job start Tue Mar 31 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53009 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47238 * 64.99772 * 4 3 2 6 6 C 1.46496 * 120.00129 * 270.00499 * 5 4 3 7 7 C 1.50699 * 109.46959 * 269.99625 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46864 * 89.99751 * 11 9 7 13 13 H 1.48493 * 109.47201 * 210.00143 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00109 * 11 9 7 15 15 C 1.34777 * 119.99525 * 90.00006 * 5 4 3 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 5 4 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 5 19 19 C 1.38246 * 119.97328 * 269.72579 * 18 17 15 20 20 C 1.38195 * 120.02726 * 179.72701 * 19 18 17 21 21 C 1.38461 * 119.97170 * 0.56770 * 20 19 18 22 22 F 1.35102 * 120.02262 * 179.68623 * 21 20 19 23 23 C 1.38454 * 119.94896 * 359.70353 * 21 20 19 24 24 C 1.38196 * 119.97581 * 0.02562 * 23 21 20 25 25 H 1.09005 * 109.46845 * 59.99625 * 1 2 3 26 26 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46962 * 299.99814 * 1 2 3 28 28 H 1.08997 * 109.47641 * 60.00312 * 3 2 1 29 29 H 1.08997 * 109.47748 * 300.00028 * 3 2 1 30 30 H 1.09000 * 109.46757 * 305.00209 * 4 3 2 31 31 H 1.09001 * 109.46821 * 185.00072 * 4 3 2 32 32 H 1.08995 * 109.47364 * 30.00213 * 6 5 4 33 33 H 1.09002 * 109.47090 * 149.99764 * 6 5 4 34 34 H 0.96997 * 119.99946 * 179.97438 * 10 9 7 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 37 37 H 1.08005 * 119.98234 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.01537 * 180.25551 * 20 19 18 39 39 H 1.07998 * 120.01154 * 179.97438 * 23 21 20 40 40 H 1.08005 * 119.98878 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5460 -0.6537 9 6 5.8603 -2.6289 -0.9517 10 7 4.9851 -3.5445 -1.3058 11 14 7.5902 -3.1320 -0.4579 12 1 7.6338 -3.3839 1.0049 13 1 7.9725 -4.3690 -1.1849 14 1 8.5394 -2.0427 -0.8011 15 6 4.2615 1.3338 -2.3217 16 8 4.1547 2.5396 -2.2471 17 6 4.7203 0.6962 -3.6078 18 6 4.9780 1.7677 -4.6357 19 6 3.9604 2.1763 -5.4775 20 6 4.1939 3.1628 -6.4167 21 6 5.4510 3.7336 -6.5224 22 9 5.6821 4.6936 -7.4445 23 6 6.4709 3.3196 -5.6826 24 6 6.2335 2.3369 -4.7404 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 3.3852 -1.3629 -0.6735 33 1 3.9120 -1.2114 -2.3668 34 1 5.2380 -4.4809 -1.3109 35 1 5.6384 0.1364 -3.4286 36 1 3.9479 0.0198 -3.9739 37 1 2.9813 1.7272 -5.3983 38 1 3.3976 3.4848 -7.0714 39 1 7.4519 3.7638 -5.7644 40 1 7.0291 2.0135 -4.0854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:49 Heat of formation + Delta-G solvation = -107.318621 kcal Electronic energy + Delta-G solvation = -23677.962187 eV Core-core repulsion = 19986.236185 eV Total energy + Delta-G solvation = -3691.726002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.77255 -39.63466 -38.45003 -37.32829 -34.88605 -32.70579 -32.25061 -30.97631 -29.90252 -27.18829 -26.85237 -25.72586 -22.92239 -22.86983 -22.70922 -21.21781 -18.38359 -17.50239 -16.71744 -16.54650 -16.19602 -16.02042 -15.68422 -15.44934 -15.35300 -14.87820 -14.54686 -14.35497 -14.07457 -13.71214 -13.39376 -13.14257 -12.97794 -12.40346 -12.09137 -11.95787 -11.76857 -11.62844 -11.47596 -11.29823 -11.23960 -10.95387 -10.88415 -10.78945 -10.52946 -10.15081 -9.72852 -9.41519 -9.12236 -8.93683 -8.53906 -8.30594 -7.70799 -6.15415 -4.22886 1.31369 1.41143 3.23325 3.30642 3.31922 3.39211 3.66130 4.03830 4.15648 4.36149 4.39679 4.86109 4.97056 5.04940 5.17524 5.37483 5.39449 5.45212 5.46667 5.51526 5.64039 5.68195 5.70819 5.84042 5.85264 6.03826 6.08711 6.13553 6.25103 6.32766 6.36165 6.39544 6.77469 6.84299 7.05808 7.30883 7.46887 7.58657 7.80848 8.10143 8.36561 8.80917 9.01092 9.44574 10.91105 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.005022 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.003608 B = 5573.780017 C = 7404.725793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.238 3.762 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.518 3.482 16 O -0.574 6.574 17 C -0.101 4.101 18 C -0.057 4.057 19 C -0.080 4.080 20 C -0.154 4.154 21 C 0.083 3.917 22 F -0.147 7.147 23 C -0.153 4.153 24 C -0.077 4.077 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 8.551 -4.497 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.317 5.317 6 C 0.119 3.881 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.307 3.693 16 O -0.456 6.456 17 C -0.140 4.140 18 C -0.058 4.058 19 C -0.099 4.099 20 C -0.172 4.172 21 C 0.064 3.936 22 F -0.126 7.126 23 C -0.171 4.171 24 C -0.095 4.095 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.110 8.802 -4.500 10.706 hybrid contribution 0.710 -0.123 0.207 0.750 sum -3.400 8.679 -4.293 10.262 Atomic orbital electron populations 1.22680 0.82196 1.02388 0.99148 1.88058 1.18634 1.27459 1.95198 1.23021 0.95357 0.84881 0.99702 1.21321 0.90995 0.99562 0.88310 1.48161 1.63566 1.10002 1.09952 1.19495 0.97299 0.72690 0.98652 1.21525 0.97364 0.92397 1.46582 0.92241 1.24922 0.97429 0.96372 0.94960 1.69931 1.34334 1.01178 1.47251 0.86561 0.84435 0.78125 0.78719 1.20572 1.21106 1.19835 1.20293 0.77087 0.86613 0.85348 1.90610 1.55702 1.14646 1.84604 1.20688 1.05320 0.96461 0.91560 1.19625 0.93421 0.97041 0.95713 1.20869 0.98963 0.95880 0.94139 1.21021 0.95724 0.99060 1.01437 1.17672 0.94983 0.90283 0.90622 1.91460 1.95273 1.61555 1.64320 1.21049 0.98918 0.99904 0.97265 1.20928 0.97092 0.94812 0.96665 0.94682 0.89858 0.94739 0.93305 0.93433 0.89515 0.89540 0.93201 0.94718 0.92584 0.86568 0.88107 0.85315 0.85162 0.85091 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.58 9.53 -35.23 -0.34 -6.91 16 3 C 0.05 0.78 6.28 37.16 0.23 1.01 16 4 C 0.12 2.21 5.81 -4.04 -0.02 2.19 16 5 N -0.59 -12.01 2.42 -175.06 -0.42 -12.44 16 6 C 0.24 5.55 4.78 -5.20 -0.02 5.52 16 7 C -0.54 -13.68 9.26 -34.44 -0.32 -13.99 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 11 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.52 10.32 7.67 -10.98 -0.08 10.24 16 16 O -0.57 -12.36 15.61 5.55 0.09 -12.28 16 17 C -0.10 -1.76 4.38 -29.03 -0.13 -1.88 16 18 C -0.06 -0.91 4.37 -104.61 -0.46 -1.37 16 19 C -0.08 -1.16 9.70 -39.59 -0.38 -1.54 16 20 C -0.15 -2.08 10.03 -39.51 -0.40 -2.47 16 21 C 0.08 1.19 7.30 -39.42 -0.29 0.90 16 22 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 23 C -0.15 -2.11 10.03 -39.52 -0.40 -2.51 16 24 C -0.08 -1.15 9.70 -39.59 -0.38 -1.54 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 31 H 0.09 1.51 7.42 -51.93 -0.39 1.12 16 32 H 0.05 1.27 7.11 -51.93 -0.37 0.90 16 33 H 0.03 0.83 6.45 -51.93 -0.33 0.49 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.12 2.10 7.92 -51.92 -0.41 1.69 16 36 H 0.10 1.65 7.35 -51.93 -0.38 1.27 16 37 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.13 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -29.47 348.13 -6.96 -36.43 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.65 Total: 2.56 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.64 Total: -2.29 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.31 Total: -35.89 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.25 Total: -19.19 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.47 -6.96 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.891 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds