Wall clock time and date at job start Tue Mar 31 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53009 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47238 * 64.99772 * 4 3 2 6 6 C 1.46496 * 120.00129 * 270.00499 * 5 4 3 7 7 C 1.50699 * 109.46959 * 269.99625 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46864 * 89.99751 * 11 9 7 13 13 H 1.48493 * 109.47201 * 210.00143 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00109 * 11 9 7 15 15 C 1.34777 * 119.99525 * 90.00006 * 5 4 3 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 5 4 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 5 19 19 C 1.38246 * 119.97328 * 269.72579 * 18 17 15 20 20 C 1.38195 * 120.02726 * 179.72701 * 19 18 17 21 21 C 1.38461 * 119.97170 * 0.56770 * 20 19 18 22 22 F 1.35102 * 120.02262 * 179.68623 * 21 20 19 23 23 C 1.38454 * 119.94896 * 359.70353 * 21 20 19 24 24 C 1.38196 * 119.97581 * 0.02562 * 23 21 20 25 25 H 1.09005 * 109.46845 * 59.99625 * 1 2 3 26 26 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46962 * 299.99814 * 1 2 3 28 28 H 1.08997 * 109.47641 * 60.00312 * 3 2 1 29 29 H 1.08997 * 109.47748 * 300.00028 * 3 2 1 30 30 H 1.09000 * 109.46757 * 305.00209 * 4 3 2 31 31 H 1.09001 * 109.46821 * 185.00072 * 4 3 2 32 32 H 1.08995 * 109.47364 * 30.00213 * 6 5 4 33 33 H 1.09002 * 109.47090 * 149.99764 * 6 5 4 34 34 H 0.96997 * 119.99946 * 179.97438 * 10 9 7 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 37 37 H 1.08005 * 119.98234 * 359.97438 * 19 18 17 38 38 H 1.08001 * 120.01537 * 180.25551 * 20 19 18 39 39 H 1.07998 * 120.01154 * 179.97438 * 23 21 20 40 40 H 1.08005 * 119.98878 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5460 -0.6537 9 6 5.8603 -2.6289 -0.9517 10 7 4.9851 -3.5445 -1.3058 11 14 7.5902 -3.1320 -0.4579 12 1 7.6338 -3.3839 1.0049 13 1 7.9725 -4.3690 -1.1849 14 1 8.5394 -2.0427 -0.8011 15 6 4.2615 1.3338 -2.3217 16 8 4.1547 2.5396 -2.2471 17 6 4.7203 0.6962 -3.6078 18 6 4.9780 1.7677 -4.6357 19 6 3.9604 2.1763 -5.4775 20 6 4.1939 3.1628 -6.4167 21 6 5.4510 3.7336 -6.5224 22 9 5.6821 4.6936 -7.4445 23 6 6.4709 3.3196 -5.6826 24 6 6.2335 2.3369 -4.7404 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 3.3852 -1.3629 -0.6735 33 1 3.9120 -1.2114 -2.3668 34 1 5.2380 -4.4809 -1.3109 35 1 5.6384 0.1364 -3.4286 36 1 3.9479 0.0198 -3.9739 37 1 2.9813 1.7272 -5.3983 38 1 3.3976 3.4848 -7.0714 39 1 7.4519 3.7638 -5.7644 40 1 7.0291 2.0135 -4.0854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071140950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:48 Heat of formation + Delta-G solvation = -122.824666 kcal Electronic energy + Delta-G solvation = -23678.634580 eV Core-core repulsion = 19986.236185 eV Total energy + Delta-G solvation = -3692.398394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.87132 -41.08351 -39.70792 -38.62750 -36.57018 -34.55730 -33.60628 -32.06764 -31.32993 -28.95241 -28.13545 -26.95572 -24.79053 -24.04458 -23.98453 -22.43809 -19.94175 -18.64491 -18.54997 -18.06729 -17.52345 -17.34340 -17.04237 -16.66605 -16.55553 -16.31350 -16.07392 -15.83856 -15.39048 -14.88769 -14.48925 -14.48240 -14.36864 -14.12164 -13.57258 -13.37871 -13.19047 -13.02491 -12.82891 -12.76356 -12.67515 -12.59532 -12.44719 -12.10056 -11.90013 -11.88030 -11.63079 -10.82178 -10.60198 -10.46405 -10.02631 -9.49662 -9.40728 -8.14343 -6.28760 0.16388 0.31847 1.44282 1.46583 1.55313 1.79122 2.29315 2.46056 2.73437 2.95496 3.16221 3.29821 3.76346 3.78373 3.93631 4.00130 4.15879 4.26989 4.28031 4.36206 4.40710 4.54087 4.56920 4.64009 4.66434 4.77988 4.85626 4.92248 4.99673 5.03455 5.11360 5.15753 5.26815 5.38076 5.61041 5.70918 5.90165 5.95670 6.13330 6.29988 6.64286 6.87839 7.34316 7.46125 8.91116 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.005022 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.003608 B = 5573.780017 C = 7404.725793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.056 3.944 4 C 0.116 3.884 5 N -0.592 5.592 6 C 0.259 3.741 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.023 3.977 10 N -0.919 5.919 11 Si 0.954 3.046 12 H -0.278 1.278 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.516 3.484 16 O -0.589 6.589 17 C -0.093 4.093 18 C -0.076 4.076 19 C -0.086 4.086 20 C -0.150 4.150 21 C 0.076 3.924 22 F -0.146 7.146 23 C -0.152 4.152 24 C -0.089 4.089 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 9.359 -4.790 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.021 4.021 4 C -0.008 4.008 5 N -0.321 5.321 6 C 0.138 3.862 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.177 4.177 10 N -0.558 5.558 11 Si 0.779 3.221 12 H -0.204 1.204 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.306 3.694 16 O -0.472 6.472 17 C -0.132 4.132 18 C -0.077 4.077 19 C -0.104 4.104 20 C -0.169 4.169 21 C 0.057 3.943 22 F -0.125 7.125 23 C -0.171 4.171 24 C -0.107 4.107 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.058 9.628 -4.787 11.493 hybrid contribution 0.642 -0.328 0.297 0.780 sum -3.416 9.300 -4.490 10.878 Atomic orbital electron populations 1.22873 0.80014 1.03346 1.00614 1.88006 1.21145 1.28263 1.95475 1.22919 0.93644 0.84729 1.00810 1.21476 0.92867 0.99338 0.87082 1.48145 1.63893 1.08977 1.11104 1.19050 0.95688 0.74186 0.97307 1.21720 0.98056 0.92445 1.46241 0.92836 1.25613 1.00781 0.96401 0.94930 1.70025 1.36050 1.01475 1.48267 0.85623 0.80352 0.77814 0.78281 1.20362 1.20739 1.19315 1.20665 0.76514 0.86412 0.85825 1.90589 1.56422 1.15222 1.84949 1.20592 1.04746 0.96944 0.90967 1.19626 0.94489 0.97420 0.96120 1.21055 0.99238 0.96131 0.93991 1.21283 0.96224 0.98208 1.01167 1.17851 0.95422 0.90368 0.90694 1.91464 1.95295 1.61499 1.64251 1.21259 0.99952 0.99303 0.96539 1.21049 0.97010 0.95340 0.97309 0.93881 0.89270 0.92510 0.90228 0.94069 0.90309 0.88977 0.95583 0.95534 0.92460 0.87663 0.87552 0.83963 0.82654 0.82998 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.19 9.53 -148.98 -1.42 -15.61 16 3 C 0.06 1.77 6.28 71.99 0.45 2.22 16 4 C 0.12 4.18 5.81 86.38 0.50 4.69 16 5 N -0.59 -24.45 2.42 -826.16 -2.00 -26.45 16 6 C 0.26 12.27 4.78 85.63 0.41 12.68 16 7 C -0.55 -27.91 9.26 25.60 0.24 -27.67 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.02 1.20 5.46 84.65 0.46 1.66 16 10 N -0.92 -50.36 13.29 21.45 0.28 -50.08 16 11 Si 0.95 41.24 29.54 68.60 2.03 43.26 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 14 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 15 C 0.52 20.63 7.67 87.66 0.67 21.30 16 16 O -0.59 -25.19 15.61 -3.04 -0.05 -25.23 16 17 C -0.09 -3.26 4.38 29.10 0.13 -3.13 16 18 C -0.08 -2.38 4.37 -19.86 -0.09 -2.46 16 19 C -0.09 -2.37 9.70 22.26 0.22 -2.16 16 20 C -0.15 -3.76 10.03 22.31 0.22 -3.54 16 21 C 0.08 2.01 7.30 22.37 0.16 2.17 16 22 F -0.15 -3.83 17.27 44.97 0.78 -3.05 16 23 C -0.15 -3.98 10.03 22.31 0.22 -3.76 16 24 C -0.09 -2.61 9.70 22.26 0.22 -2.39 16 25 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 2.94 8.07 -2.39 -0.02 2.92 16 31 H 0.09 3.19 7.42 -2.39 -0.02 3.17 16 32 H 0.03 1.36 7.11 -2.39 -0.02 1.35 16 33 H 0.03 1.30 6.45 -2.39 -0.02 1.28 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.11 3.89 7.92 -2.38 -0.02 3.87 16 36 H 0.11 3.53 7.35 -2.39 -0.02 3.51 16 37 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 38 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 40 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -61.69 348.13 5.72 -55.97 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.03 Total: 19.64 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.07 Total: 1.55 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.71 Total: -76.53 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.47 Total: -40.84 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -61.69 5.72 -55.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.852 kcal (2) G-P(sol) polarization free energy of solvation -61.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds