Wall clock time and date at job start Tue Mar 31 2020 07:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00194 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46992 * 64.99670 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47015 * 119.99649 * 11 9 7 14 14 H 1.48496 * 109.47036 * 240.00093 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 5 4 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 5 4 18 18 C 1.50690 * 109.47185 * 180.02562 * 17 15 5 19 19 C 1.38269 * 119.98886 * 269.72682 * 18 17 15 20 20 C 1.38222 * 120.05386 * 179.72921 * 19 18 17 21 21 C 1.38230 * 120.02407 * 0.54499 * 20 19 18 22 22 C 1.38435 * 119.97242 * 359.72971 * 21 20 19 23 23 F 1.35097 * 120.02442 * 180.02562 * 22 21 20 24 24 C 1.38180 * 119.98777 * 90.00461 * 18 17 15 25 25 H 1.09005 * 109.47031 * 300.00496 * 1 2 3 26 26 H 1.08996 * 109.47115 * 59.99818 * 1 2 3 27 27 H 1.08998 * 109.47832 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47320 * 59.99819 * 3 2 1 29 29 H 1.08998 * 109.46759 * 299.99542 * 3 2 1 30 30 H 1.09000 * 109.46884 * 305.00285 * 4 3 2 31 31 H 1.09000 * 109.46955 * 184.99601 * 4 3 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 33 33 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 34 34 H 0.96995 * 119.99689 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46762 * 300.00389 * 17 15 5 36 36 H 1.08998 * 109.46924 * 59.99727 * 17 15 5 37 37 H 1.08003 * 119.97421 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.99156 * 180.27680 * 20 19 18 39 39 H 1.07997 * 120.00927 * 179.74870 * 21 20 19 40 40 H 1.07998 * 120.01297 * 359.97154 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2864 1.4004 -2.4149 7 6 5.7443 1.7807 -2.3846 8 1 6.3761 1.4346 -1.5800 9 6 6.2713 2.5715 -3.3836 10 7 5.5018 2.9934 -4.3632 11 14 8.0783 3.0435 -3.3458 12 1 8.7213 2.4452 -2.1484 13 1 8.7477 2.5379 -4.5711 14 1 8.2025 4.5222 -3.2881 15 6 4.1001 -0.7753 -1.3338 16 8 3.8473 -1.4673 -0.3704 17 6 4.5534 -1.4134 -2.6216 18 6 4.6087 -2.9094 -2.4488 19 6 5.7751 -3.5124 -2.0153 20 6 5.8255 -4.8839 -1.8509 21 6 4.7132 -5.6554 -2.1305 22 6 3.5467 -5.0534 -2.5700 23 9 2.4588 -5.8063 -2.8431 24 6 3.4955 -3.6786 -2.7290 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8514 0.5680 0.8409 31 1 3.9786 2.1764 0.0889 32 1 4.0745 0.8455 -3.3288 33 1 3.6750 2.3024 -2.3873 34 1 5.8725 3.5500 -5.0657 35 1 3.8505 -1.1656 -3.4170 36 1 5.5438 -1.0406 -2.8829 37 1 6.6462 -2.9109 -1.8012 38 1 6.7357 -5.3533 -1.5080 39 1 4.7542 -6.7274 -2.0059 40 1 2.5859 -3.2078 -3.0714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071141073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:54 Heat of formation + Delta-G solvation = -121.543679 kcal Electronic energy + Delta-G solvation = -23919.356010 eV Core-core repulsion = 20227.013163 eV Total energy + Delta-G solvation = -3692.342847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.88243 -41.00956 -39.67265 -38.56305 -36.60305 -34.56955 -33.81193 -31.55501 -31.29646 -29.04496 -28.37764 -27.04523 -24.90288 -24.05535 -23.62734 -22.48900 -19.96051 -18.60833 -18.22030 -17.95775 -17.46832 -17.34367 -17.08088 -16.94894 -16.55842 -16.51657 -16.10282 -15.96191 -15.39829 -14.82632 -14.44195 -14.40174 -14.16264 -14.02824 -13.50163 -13.41212 -13.17670 -13.02797 -12.96625 -12.78929 -12.64682 -12.51279 -12.46637 -12.07840 -12.00874 -11.85403 -11.63153 -10.75004 -10.57923 -10.49293 -9.86247 -9.58703 -9.37842 -8.17412 -6.32249 0.22239 0.29414 1.43096 1.47282 1.56982 1.91503 2.31104 2.46052 2.74935 2.97440 3.13109 3.26791 3.70893 3.86139 3.96970 4.12864 4.17240 4.27000 4.29665 4.39518 4.44188 4.51830 4.52549 4.53947 4.65845 4.74805 4.80472 4.89712 4.99202 5.00730 5.12715 5.17139 5.25965 5.38056 5.59775 5.69875 5.89617 5.98580 6.09017 6.33701 6.64026 6.87132 7.36856 7.52448 8.87933 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.005504 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.686020 B = 5085.700736 C = 6904.387897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.050 3.950 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.252 3.748 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.023 3.977 10 N -0.921 5.921 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.281 1.281 15 C 0.521 3.479 16 O -0.573 6.573 17 C -0.095 4.095 18 C -0.039 4.039 19 C -0.127 4.127 20 C -0.084 4.084 21 C -0.156 4.156 22 C 0.080 3.920 23 F -0.148 7.148 24 C -0.155 4.155 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.028 0.972 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -9.338 4.346 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.027 4.027 4 C -0.006 4.006 5 N -0.330 5.330 6 C 0.131 3.869 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.560 5.560 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.206 1.206 15 C 0.310 3.690 16 O -0.453 6.453 17 C -0.135 4.135 18 C -0.040 4.040 19 C -0.146 4.146 20 C -0.101 4.101 21 C -0.175 4.175 22 C 0.061 3.939 23 F -0.127 7.127 24 C -0.174 4.174 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.178 0.822 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.377 -9.756 4.672 11.332 hybrid contribution 0.203 0.942 -0.416 1.050 sum -3.174 -8.814 4.255 10.289 Atomic orbital electron populations 1.22843 0.80443 1.03003 1.00581 1.88070 1.20633 1.28183 1.95447 1.22993 0.93885 0.84866 1.00966 1.21456 0.92756 0.99286 0.87086 1.48083 1.64969 1.05974 1.13949 1.19091 0.94998 0.89770 0.83026 1.21717 0.95518 1.31855 1.09083 0.92664 1.25622 1.01803 0.95493 0.94784 1.70017 1.37335 1.35910 1.12730 0.85546 0.80308 0.77927 0.78134 1.19375 1.20448 1.20640 1.20446 0.76702 0.82151 0.89694 1.90607 1.52203 1.62615 1.39901 1.20627 1.05073 0.91387 0.96392 1.19335 0.93705 0.93926 0.97013 1.21354 0.97823 0.96052 0.99334 1.21313 0.98979 0.92633 0.97197 1.21407 0.91665 1.02243 1.02157 1.17814 0.84544 0.88808 1.02754 1.91452 1.53391 1.76055 1.91809 1.21017 0.99656 0.92516 1.04218 0.92580 0.93951 0.89679 0.90261 0.93594 0.91078 0.88201 0.95354 0.96077 0.92378 0.88207 0.87265 0.84793 0.81604 0.82221 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.36 9.52 -142.28 -1.35 -15.72 16 3 C 0.05 1.60 6.28 71.98 0.45 2.05 16 4 C 0.12 4.27 5.86 86.38 0.51 4.78 16 5 N -0.60 -25.02 2.44 -826.14 -2.01 -27.04 16 6 C 0.25 11.65 4.96 85.63 0.42 12.08 16 7 C -0.54 -27.07 9.26 25.60 0.24 -26.84 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.02 1.18 5.46 84.65 0.46 1.64 16 10 N -0.92 -49.25 13.29 21.45 0.28 -48.96 16 11 Si 0.96 40.37 29.54 68.60 2.03 42.40 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 15 C 0.52 21.97 7.30 87.66 0.64 22.61 16 16 O -0.57 -26.45 14.85 3.67 0.05 -26.40 16 17 C -0.10 -3.54 4.38 29.10 0.13 -3.41 16 18 C -0.04 -1.32 4.37 -19.87 -0.09 -1.41 16 19 C -0.13 -3.74 9.70 22.27 0.22 -3.52 16 20 C -0.08 -1.96 10.04 22.26 0.22 -1.74 16 21 C -0.16 -3.78 10.03 22.31 0.22 -3.56 16 22 C 0.08 2.36 7.30 22.38 0.16 2.53 16 23 F -0.15 -4.39 17.27 44.97 0.78 -3.61 16 24 C -0.16 -5.07 9.68 22.32 0.22 -4.86 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 2.70 7.41 -2.39 -0.02 2.68 16 31 H 0.10 3.40 8.07 -2.39 -0.02 3.38 16 32 H 0.03 1.37 6.45 -2.39 -0.02 1.35 16 33 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 34 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 35 H 0.10 3.59 7.35 -2.39 -0.02 3.58 16 36 H 0.11 4.13 7.92 -2.39 -0.02 4.11 16 37 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -62.80 348.20 5.86 -56.95 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.03 Total: 20.06 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.05 Total: 2.32 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.73 Total: -76.00 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.30 Total: -42.11 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -62.80 5.86 -56.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.595 kcal (2) G-P(sol) polarization free energy of solvation -62.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds