Wall clock time and date at job start Tue Mar 31 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00023 * 2 1 4 4 O 1.20828 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00159 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47518 * 59.99704 * 5 3 2 7 7 N 1.46906 * 109.47387 * 180.02562 * 5 3 2 8 8 C 1.46903 * 110.99751 * 274.99866 * 7 5 3 9 9 C 1.52997 * 109.47144 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47265 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47232 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99995 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00154 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99777 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47153 * 90.00183 * 15 13 11 17 17 H 1.48500 * 109.47021 * 210.00252 * 15 13 11 18 18 H 1.48499 * 109.47141 * 330.00245 * 15 13 11 19 19 C 1.50706 * 109.47142 * 299.99657 * 5 3 2 20 20 C 1.38216 * 120.01546 * 265.00183 * 19 5 3 21 21 C 1.38217 * 120.02581 * 179.97438 * 20 19 5 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 84.97751 * 19 5 3 25 25 F 1.35099 * 120.02540 * 0.04305 * 24 19 5 26 26 H 1.08998 * 109.47425 * 300.00265 * 1 2 3 27 27 H 1.08999 * 109.47118 * 60.00256 * 1 2 3 28 28 H 1.08999 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.00895 * 110.99665 * 38.95008 * 7 5 3 30 30 H 1.08997 * 109.47172 * 299.99979 * 8 7 5 31 31 H 1.08997 * 109.47191 * 59.99738 * 8 7 5 32 32 H 1.09004 * 109.46639 * 299.99883 * 9 8 7 33 33 H 1.09004 * 109.47326 * 59.99352 * 9 8 7 34 34 H 1.09004 * 109.47052 * 299.99453 * 10 9 8 35 35 H 1.08997 * 109.47276 * 59.99517 * 10 9 8 36 36 H 0.97001 * 119.99778 * 179.97438 * 14 13 11 37 37 H 1.08000 * 119.98383 * 0.02562 * 20 19 5 38 38 H 1.07997 * 119.97673 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 40 40 H 1.08002 * 120.01438 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9828 2.6836 0.0002 8 6 4.0169 3.2232 -1.3658 9 6 4.4546 4.6886 -1.3245 10 6 4.4895 5.2508 -2.7470 11 6 4.9201 6.6944 -2.7063 12 1 5.1458 7.1641 -1.7603 13 6 5.0258 7.4155 -3.8766 14 7 4.7514 6.8434 -5.0285 15 14 5.5588 9.2052 -3.8260 16 1 7.0377 9.2845 -3.9351 17 1 4.9388 9.9385 -4.9587 18 1 5.1236 9.8152 -2.5439 19 6 4.1056 0.5915 1.2296 20 6 4.3965 1.3315 2.3602 21 6 4.8906 0.7050 3.4887 22 6 5.0951 -0.6625 3.4880 23 6 4.8051 -1.4044 2.3590 24 6 4.3094 -0.7778 1.2279 25 9 4.0258 -1.5021 0.1232 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.3831 3.2376 0.5929 30 1 4.7240 2.6499 -1.9653 31 1 3.0237 3.1526 -1.8092 32 1 3.7478 5.2621 -0.7248 33 1 5.4479 4.7588 -0.8811 34 1 5.1962 4.6774 -3.3470 35 1 3.4961 5.1806 -3.1899 36 1 4.8255 7.3509 -5.8519 37 1 4.2368 2.3997 2.3619 38 1 5.1180 1.2840 4.3715 39 1 5.4855 -1.1504 4.3689 40 1 4.9645 -2.4726 2.3588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174057042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:09 Heat of formation + Delta-G solvation = -112.329105 kcal Electronic energy + Delta-G solvation = -23402.903829 eV Core-core repulsion = 19710.960556 eV Total energy + Delta-G solvation = -3691.943273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.00055 -40.87250 -39.15090 -37.18934 -35.91403 -33.88406 -32.27273 -30.75193 -30.35783 -28.47229 -26.89283 -25.23590 -23.10447 -22.63153 -22.15064 -20.74683 -20.09581 -18.08049 -17.76487 -17.15269 -16.84463 -16.38685 -16.22318 -15.85299 -15.60680 -14.82129 -14.52703 -14.36692 -14.17771 -14.05254 -13.64314 -13.37503 -13.19976 -12.74283 -12.50860 -12.26966 -12.15309 -11.85050 -11.68141 -11.52847 -11.21955 -10.94279 -10.90931 -10.80144 -10.59301 -10.50189 -9.71253 -9.36797 -9.16479 -9.04242 -8.85550 -8.59046 -8.31554 -5.96778 -3.98774 0.88065 1.02550 2.01775 2.56928 3.34624 3.39128 3.40517 3.44298 3.95962 4.13417 4.33903 4.49552 4.56997 4.69470 4.77895 4.94380 4.95719 5.03217 5.07838 5.22908 5.34805 5.39145 5.60940 5.69672 5.81367 5.86121 5.91528 6.11282 6.17835 6.19978 6.28756 6.57971 6.67285 6.70408 7.06481 7.13442 7.33730 7.56790 7.70932 7.85561 8.03413 8.46256 9.08201 9.65013 11.14767 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019210 B = 0.003242 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.205962 B = 8634.549273 C = 9373.473449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.353 6.353 3 C 0.438 3.562 4 O -0.498 6.498 5 C 0.137 3.863 6 H 0.127 0.873 7 N -0.653 5.653 8 C 0.052 3.948 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.112 4.112 20 C -0.059 4.059 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.160 4.160 24 C 0.119 3.881 25 F -0.132 7.132 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.352 0.648 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -19.333 16.899 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.268 6.268 3 C 0.278 3.722 4 O -0.385 6.385 5 C 0.024 3.976 6 H 0.145 0.855 7 N -0.285 5.285 8 C -0.075 4.075 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.113 4.113 20 C -0.077 4.077 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.179 4.179 24 C 0.099 3.901 25 F -0.110 7.110 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.174 0.826 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.257 -19.153 16.663 25.595 hybrid contribution -0.965 0.987 -0.572 1.494 sum -4.222 -18.167 16.091 24.633 Atomic orbital electron populations 1.23275 0.76644 1.03582 1.02570 1.86579 1.23227 1.33313 1.83658 1.25070 0.93157 0.81798 0.72211 1.90706 1.66582 1.36271 1.44922 1.20170 0.85007 0.93742 0.98637 0.85540 1.61049 1.54332 0.99186 1.13928 1.22328 1.00030 0.98410 0.86777 1.21605 1.00380 0.90978 1.01302 1.19061 0.97155 0.95514 0.89800 1.21243 1.45260 0.96361 0.92785 0.92626 1.25031 0.95563 0.98368 0.95585 1.69968 1.49361 1.36640 0.97632 0.86587 0.78720 0.85062 0.77589 1.20657 1.21284 1.19871 1.19440 1.04260 0.91634 0.96003 1.20972 0.95238 1.00686 0.90803 1.21228 1.00639 0.94746 0.98687 1.21047 0.98042 0.94050 0.97504 1.21088 1.03131 1.01043 0.92610 1.17489 1.00020 0.88613 0.83991 1.91518 1.91093 1.77333 1.51060 0.92008 0.91789 0.88167 0.82649 0.90930 0.94715 0.93335 0.92332 0.96509 0.96726 0.93047 0.84231 0.85142 0.85088 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.52 10.39 -39.24 -0.41 -4.93 16 3 C 0.44 6.30 7.07 36.00 0.25 6.55 16 4 O -0.50 -8.38 15.05 -18.75 -0.28 -8.66 16 5 C 0.14 1.85 2.49 -70.01 -0.17 1.68 16 6 H 0.13 1.68 7.45 -51.93 -0.39 1.30 16 7 N -0.65 -9.70 5.10 -109.18 -0.56 -10.26 16 8 C 0.05 0.93 5.38 -3.82 -0.02 0.91 16 9 C -0.10 -2.20 5.41 -26.73 -0.14 -2.35 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 15 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.11 -1.34 4.99 -104.55 -0.52 -1.86 16 20 C -0.06 -0.62 9.32 -39.60 -0.37 -0.99 16 21 C -0.13 -1.15 10.04 -39.58 -0.40 -1.55 16 22 C -0.09 -0.69 10.04 -39.59 -0.40 -1.08 16 23 C -0.16 -1.44 10.03 -39.51 -0.40 -1.83 16 24 C 0.12 1.34 7.19 -39.42 -0.28 1.06 16 25 F -0.13 -1.61 16.53 2.25 0.04 -1.57 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.35 5.22 7.17 -39.29 -0.28 4.93 16 30 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 31 H 0.03 0.65 7.62 -51.93 -0.40 0.26 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.14 1.45 6.89 -52.49 -0.36 1.09 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -32.77 347.67 -7.80 -40.57 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.61 Total: 0.70 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.93 Total: -11.38 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.18 Total: -36.96 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.69 Total: -13.60 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.77 -7.80 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174057042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.760 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds