Wall clock time and date at job start Tue Mar 31 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00134 * 2 1 4 4 C 1.52993 * 109.47463 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47532 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47412 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46867 * 179.97438 * 6 5 4 8 8 C 1.40000 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38641 * 120.10373 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.00818 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47522 * 60.00238 * 20 18 16 22 22 H 1.48503 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47248 * 299.99972 * 20 18 16 24 24 H 1.08996 * 109.47387 * 300.00023 * 1 2 3 25 25 H 1.09004 * 109.46956 * 60.00434 * 1 2 3 26 26 H 1.09008 * 109.47058 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47358 * 59.99521 * 3 2 1 28 28 H 1.08999 * 109.47522 * 300.00418 * 3 2 1 29 29 H 1.09003 * 109.47097 * 60.00122 * 4 3 2 30 30 H 1.09004 * 109.47549 * 300.00171 * 4 3 2 31 31 H 1.09003 * 109.46792 * 59.99981 * 5 4 3 32 32 H 1.09004 * 109.46881 * 300.00626 * 5 4 3 33 33 H 1.08999 * 109.46712 * 60.00365 * 6 5 4 34 34 H 1.08999 * 109.47173 * 300.00029 * 6 5 4 35 35 H 0.97001 * 120.00343 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.99368 * 359.95163 * 9 8 7 37 37 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 38 38 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 39 39 H 1.08007 * 120.00130 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 41 41 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 42 42 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4616 0.0013 7 7 6.2788 3.7999 0.0001 8 6 7.6711 3.9462 0.0015 9 6 8.4880 2.8260 0.0035 10 6 9.8631 2.9728 0.0043 11 6 10.4279 4.2349 0.0026 12 6 9.6213 5.3577 0.0006 13 6 8.2409 5.2199 0.0008 14 16 7.2101 6.6490 -0.0011 15 6 8.4050 8.0139 -0.0021 16 6 7.6669 9.3277 -0.0032 17 1 6.5869 9.3403 -0.0036 18 6 8.3702 10.5136 -0.0046 19 7 9.6851 10.4982 -0.0056 20 14 7.4551 12.1421 -0.0066 21 1 6.6024 12.2323 1.2058 22 1 8.4332 13.2596 -0.0086 23 1 6.6023 12.2293 -1.2193 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6436 -0.8891 30 1 3.8568 0.6438 0.8908 31 1 3.8358 3.1238 0.8896 32 1 3.8364 3.1227 -0.8904 33 1 6.0053 1.9200 -0.8880 34 1 6.0039 1.9214 0.8919 35 1 5.7086 4.5847 -0.0010 36 1 8.0504 1.8387 0.0048 37 1 10.4978 2.0990 0.0055 38 1 11.5023 4.3439 0.0075 39 1 10.0658 6.3420 -0.0011 40 1 9.0307 7.9498 0.8881 41 1 9.0312 7.9478 -0.8919 42 1 10.1800 11.3326 -0.0070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179282398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:49 Heat of formation + Delta-G solvation = -43.446594 kcal Electronic energy + Delta-G solvation = -20135.787942 eV Core-core repulsion = 17013.044815 eV Total energy + Delta-G solvation = -3122.743127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.00818 -38.33675 -36.27902 -33.72055 -33.19944 -30.67834 -29.81387 -28.53535 -27.63411 -26.16782 -23.72475 -23.11715 -22.38582 -21.31002 -20.86879 -17.58049 -16.69410 -16.65759 -16.29453 -16.09571 -15.90888 -15.37464 -15.19516 -14.72223 -14.18012 -13.80569 -13.60766 -13.52329 -12.95250 -12.91027 -12.54508 -12.33096 -12.32420 -12.14093 -11.90283 -11.64420 -11.47255 -11.22659 -11.04856 -10.90953 -10.90490 -10.67912 -10.02697 -9.95681 -9.81200 -9.66695 -9.09675 -9.04070 -8.60452 -7.45799 -6.30758 -6.24306 -4.29714 1.76080 2.00089 2.57523 3.24835 3.27180 3.28538 3.32138 3.63310 3.87172 4.23596 4.31094 4.59154 4.59271 4.89201 4.94003 4.98651 5.04546 5.09721 5.12949 5.24158 5.26797 5.32050 5.41795 5.46833 5.54627 5.63072 5.69341 5.90637 5.94721 5.95348 6.10114 6.33586 6.55181 6.75427 6.79057 7.00355 7.01582 7.04609 7.20619 7.62140 7.68382 7.93270 7.97379 8.70881 9.33727 10.86880 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.002993 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.787139 B = 9354.054720 C =11346.185796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.131 3.869 7 N -0.747 5.747 8 C 0.223 3.777 9 C -0.189 4.189 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.089 4.089 13 C -0.136 4.136 14 S -0.181 6.181 15 C 0.080 3.920 16 C -0.518 4.518 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.404 0.596 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -18.965 0.019 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.152 4.152 5 C -0.168 4.168 6 C 0.006 3.994 7 N -0.379 5.379 8 C 0.115 3.885 9 C -0.214 4.214 10 C -0.116 4.116 11 C -0.181 4.181 12 C -0.114 4.114 13 C -0.253 4.253 14 S 0.063 5.937 15 C -0.067 4.067 16 C -0.558 4.558 17 H 0.085 0.915 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.241 0.759 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.457 -19.007 0.017 22.193 hybrid contribution 0.624 1.343 0.000 1.481 sum -10.833 -17.664 0.017 20.721 Atomic orbital electron populations 1.22741 0.80976 1.02735 1.00061 1.87859 1.19772 1.28255 1.95458 1.22564 0.94123 0.84530 1.00437 1.21393 0.92954 0.97101 1.03726 1.21669 0.94700 0.97026 1.03375 1.21194 0.92050 0.85168 1.00980 1.44704 1.03011 1.07224 1.82987 1.17292 0.83560 0.91870 0.95752 1.20424 0.93508 0.96327 1.11124 1.20766 0.94039 0.96899 0.99856 1.20800 0.99170 0.92246 1.05909 1.21180 0.91776 0.99660 0.98794 1.21484 0.97017 0.95874 1.10933 1.84867 1.18838 0.98227 1.91764 1.21297 0.93965 0.90776 1.00673 1.20589 0.93411 0.88637 1.53121 0.91506 1.24949 0.94968 0.99306 0.94480 1.69937 1.05751 1.27968 1.49037 0.86394 0.79334 0.81864 0.78953 1.19878 1.20985 1.19884 0.94033 0.94041 0.89645 0.93146 0.93139 0.90782 0.90775 0.90928 0.90919 0.92466 0.92462 0.75949 0.86528 0.86729 0.86655 0.85241 0.93930 0.93929 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.77 10.70 -35.23 -0.38 -4.15 16 3 C 0.06 0.49 5.94 37.15 0.22 0.71 16 4 C -0.11 -0.91 5.58 -26.73 -0.15 -1.06 16 5 C -0.13 -1.14 5.33 -26.73 -0.14 -1.28 16 6 C 0.13 1.40 4.92 -4.04 -0.02 1.38 16 7 N -0.75 -10.85 5.68 -58.44 -0.33 -11.18 16 8 C 0.22 3.79 6.66 -83.49 -0.56 3.23 16 9 C -0.19 -2.82 9.31 -39.42 -0.37 -3.19 16 10 C -0.09 -1.37 10.04 -39.55 -0.40 -1.76 16 11 C -0.16 -2.59 10.04 -39.56 -0.40 -2.99 16 12 C -0.09 -1.72 9.36 -39.40 -0.37 -2.08 16 13 C -0.14 -2.69 6.12 -38.92 -0.24 -2.93 16 14 S -0.18 -3.95 20.37 -107.50 -2.19 -6.14 16 15 C 0.08 2.05 4.09 36.01 0.15 2.20 16 16 C -0.52 -14.38 9.13 -34.44 -0.31 -14.69 16 17 H 0.07 1.83 7.71 -52.48 -0.40 1.43 16 18 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 19 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 20 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 34 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 35 H 0.40 6.12 7.02 -40.82 -0.29 5.84 16 36 H 0.12 1.44 6.74 -52.49 -0.35 1.09 16 37 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.67 5.88 -52.48 -0.31 2.36 16 40 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 41 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -29.98 360.34 -10.09 -40.07 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.77 Total: 4.08 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.57 Total: -19.37 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.40 Total: -35.98 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.38 Total: -4.15 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.19 Total: -6.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.98 -10.09 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179282398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.376 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds