Wall clock time and date at job start Tue Mar 31 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00134 * 2 1 4 4 C 1.52993 * 109.47463 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47532 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47412 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46867 * 179.97438 * 6 5 4 8 8 C 1.40000 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38641 * 120.10373 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.00818 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47522 * 60.00238 * 20 18 16 22 22 H 1.48503 * 109.47464 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47248 * 299.99972 * 20 18 16 24 24 H 1.08996 * 109.47387 * 300.00023 * 1 2 3 25 25 H 1.09004 * 109.46956 * 60.00434 * 1 2 3 26 26 H 1.09008 * 109.47058 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47358 * 59.99521 * 3 2 1 28 28 H 1.08999 * 109.47522 * 300.00418 * 3 2 1 29 29 H 1.09003 * 109.47097 * 60.00122 * 4 3 2 30 30 H 1.09004 * 109.47549 * 300.00171 * 4 3 2 31 31 H 1.09003 * 109.46792 * 59.99981 * 5 4 3 32 32 H 1.09004 * 109.46881 * 300.00626 * 5 4 3 33 33 H 1.08999 * 109.46712 * 60.00365 * 6 5 4 34 34 H 1.08999 * 109.47173 * 300.00029 * 6 5 4 35 35 H 0.97001 * 120.00343 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.99368 * 359.95163 * 9 8 7 37 37 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 38 38 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 39 39 H 1.08007 * 120.00130 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 41 41 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 42 42 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4616 0.0013 7 7 6.2788 3.7999 0.0001 8 6 7.6711 3.9462 0.0015 9 6 8.4880 2.8260 0.0035 10 6 9.8631 2.9728 0.0043 11 6 10.4279 4.2349 0.0026 12 6 9.6213 5.3577 0.0006 13 6 8.2409 5.2199 0.0008 14 16 7.2101 6.6490 -0.0011 15 6 8.4050 8.0139 -0.0021 16 6 7.6669 9.3277 -0.0032 17 1 6.5869 9.3403 -0.0036 18 6 8.3702 10.5136 -0.0046 19 7 9.6851 10.4982 -0.0056 20 14 7.4551 12.1421 -0.0066 21 1 6.6024 12.2323 1.2058 22 1 8.4332 13.2596 -0.0086 23 1 6.6023 12.2293 -1.2193 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6436 -0.8891 30 1 3.8568 0.6438 0.8908 31 1 3.8358 3.1238 0.8896 32 1 3.8364 3.1227 -0.8904 33 1 6.0053 1.9200 -0.8880 34 1 6.0039 1.9214 0.8919 35 1 5.7086 4.5847 -0.0010 36 1 8.0504 1.8387 0.0048 37 1 10.4978 2.0990 0.0055 38 1 11.5023 4.3439 0.0075 39 1 10.0658 6.3420 -0.0011 40 1 9.0307 7.9498 0.8881 41 1 9.0312 7.9478 -0.8919 42 1 10.1800 11.3326 -0.0070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179282398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:49 Heat of formation + Delta-G solvation = -60.208968 kcal Electronic energy + Delta-G solvation = -20136.514813 eV Core-core repulsion = 17013.044815 eV Total energy + Delta-G solvation = -3123.469998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24583 -38.98612 -37.25685 -35.36900 -34.58234 -32.03684 -30.91563 -30.49615 -28.50291 -26.87901 -25.40251 -24.44807 -23.50146 -22.20609 -22.01618 -19.13178 -18.20587 -17.54343 -17.28780 -17.27030 -17.05332 -16.59210 -16.11609 -15.89840 -15.55139 -14.90898 -14.85824 -14.75499 -14.62828 -14.41506 -14.21212 -13.70644 -13.25287 -13.02440 -12.86395 -12.77934 -12.70586 -12.59056 -12.27327 -12.20816 -11.89377 -11.74418 -11.69610 -11.58877 -10.96944 -10.89610 -10.81853 -10.62276 -10.40734 -8.80893 -8.36334 -7.85560 -6.51248 0.41805 0.69741 0.92232 1.38911 1.42213 1.51100 1.88696 2.34178 2.45618 2.92393 2.92619 2.98257 3.87803 3.94579 3.98151 4.22533 4.30552 4.30837 4.33236 4.49802 4.53085 4.53979 4.57805 4.61587 4.69688 4.79505 4.84341 4.85887 4.86111 4.88460 4.95767 5.03217 5.26389 5.27885 5.30001 5.48340 5.52455 5.70532 5.82109 5.96750 6.22172 6.45322 6.55619 6.73538 7.17260 8.75726 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.002993 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.787139 B = 9354.054720 C =11346.185796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.057 3.943 4 C -0.106 4.106 5 C -0.121 4.121 6 C 0.127 3.873 7 N -0.748 5.748 8 C 0.222 3.778 9 C -0.185 4.185 10 C -0.076 4.076 11 C -0.168 4.168 12 C -0.110 4.110 13 C -0.173 4.173 14 S -0.175 6.175 15 C 0.087 3.913 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.015 3.985 19 N -0.923 5.923 20 Si 0.980 3.020 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -21.022 0.022 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.144 4.144 5 C -0.159 4.159 6 C 0.004 3.996 7 N -0.378 5.378 8 C 0.113 3.887 9 C -0.210 4.210 10 C -0.097 4.097 11 C -0.189 4.189 12 C -0.135 4.135 13 C -0.289 4.289 14 S 0.068 5.932 15 C -0.061 4.061 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.190 1.190 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.116 0.884 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.513 -21.111 0.021 24.541 hybrid contribution 0.968 1.773 -0.001 2.020 sum -11.546 -19.338 0.020 22.522 Atomic orbital electron populations 1.22916 0.79653 1.03790 1.00751 1.87816 1.21357 1.28953 1.95611 1.22613 0.94161 0.84291 1.00875 1.21308 0.92899 0.96351 1.03884 1.21578 0.93479 0.97591 1.03281 1.21429 0.92997 0.83250 1.01914 1.44931 1.02143 1.08639 1.82130 1.17512 0.84950 0.91263 0.95010 1.20862 0.93605 0.96973 1.09525 1.21263 0.94487 0.97323 0.96585 1.21055 0.99988 0.92101 1.05802 1.21107 0.92298 0.99569 1.00529 1.21491 0.96918 0.95725 1.14814 1.84444 1.17860 0.98087 1.92828 1.20894 0.94386 0.92753 0.98026 1.20943 0.93591 0.89913 1.53655 0.91533 1.25955 0.95831 1.03270 0.93569 1.70062 1.07385 1.29166 1.49493 0.85283 0.78177 0.76898 0.79421 1.18938 1.20100 1.18951 0.93339 0.93350 0.88516 0.92731 0.92725 0.90605 0.90594 0.91068 0.91059 0.91373 0.91364 0.76693 0.83066 0.82441 0.84707 0.88365 0.96639 0.96639 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.35 10.70 -148.98 -1.59 -8.95 16 3 C 0.06 0.84 5.94 71.98 0.43 1.26 16 4 C -0.11 -1.48 5.58 30.59 0.17 -1.31 16 5 C -0.12 -1.89 5.33 30.60 0.16 -1.73 16 6 C 0.13 2.39 4.92 86.38 0.42 2.82 16 7 N -0.75 -20.69 5.68 -338.82 -1.93 -22.61 16 8 C 0.22 7.25 6.66 38.25 0.25 7.51 16 9 C -0.19 -4.90 9.31 22.38 0.21 -4.69 16 10 C -0.08 -1.93 10.04 22.29 0.22 -1.71 16 11 C -0.17 -5.28 10.04 22.28 0.22 -5.05 16 12 C -0.11 -4.44 9.36 22.39 0.21 -4.23 16 13 C -0.17 -6.98 6.12 22.70 0.14 -6.84 16 14 S -0.17 -7.98 20.37 -56.49 -1.15 -9.13 16 15 C 0.09 4.80 4.09 71.24 0.29 5.09 16 16 C -0.54 -31.32 9.13 25.60 0.23 -31.09 16 17 H 0.07 3.75 7.71 -2.91 -0.02 3.73 16 18 C 0.02 0.85 5.46 84.65 0.46 1.32 16 19 N -0.92 -54.89 13.29 21.44 0.28 -54.61 16 20 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 34 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 35 H 0.40 11.88 7.02 -92.71 -0.65 11.23 16 36 H 0.15 2.96 6.74 -2.91 -0.02 2.94 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 39 H 0.10 4.46 5.88 -2.91 -0.02 4.44 16 40 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 41 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 42 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -67.38 360.34 2.66 -64.71 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.34 Total: 21.98 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 4.68 Total: -37.11 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -1.64 Total: -77.22 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -1.59 Total: -8.95 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.15 Total: -9.13 kcal Total: -67.38 2.66 -64.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179282398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.506 kcal (2) G-P(sol) polarization free energy of solvation -67.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds