Wall clock time and date at job start Tue Mar 31 2020 06:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47452 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47088 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00531 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00563 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99909 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47166 * 90.00266 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00277 * 21 19 17 24 24 H 1.48493 * 109.47123 * 330.00186 * 21 19 17 25 25 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 26 26 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 27 27 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 31 31 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 32 32 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 35 35 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 36 36 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 37 37 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 38 38 H 1.08998 * 109.47061 * 300.00668 * 16 15 14 39 39 H 1.09002 * 109.46668 * 60.00355 * 16 15 14 40 40 H 0.96996 * 120.00667 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1282 -3.3468 -3.0364 16 6 6.3009 -3.8429 -4.4734 17 6 7.1231 -5.1059 -4.4733 18 1 7.4865 -5.5137 -3.5416 19 6 7.4123 -5.7402 -5.6628 20 7 8.1294 -6.8427 -5.6628 21 14 6.7844 -5.0345 -7.2744 22 1 7.7866 -4.0862 -7.8234 23 1 6.5627 -6.1368 -8.2445 24 1 5.5048 -4.3196 -7.0366 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2127 2.3195 0.0005 29 1 1.3323 4.5114 0.0011 30 1 5.1356 2.5736 0.0102 31 1 3.7453 -0.7424 0.5897 32 1 5.2317 0.2246 0.4347 33 1 5.5256 -2.0829 -0.9259 34 1 4.3153 -2.2678 -3.4711 35 1 5.8015 -1.3003 -3.6256 36 1 7.1069 -3.1437 -2.6016 37 1 5.6203 -4.1105 -2.4473 38 1 5.3221 -4.0461 -4.9078 39 1 6.8086 -3.0794 -5.0628 40 1 8.3326 -7.2891 -6.4996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186207075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:08 Heat of formation + Delta-G solvation = -110.199132 kcal Electronic energy + Delta-G solvation = -22665.309545 eV Core-core repulsion = 18973.458635 eV Total energy + Delta-G solvation = -3691.850910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.01486 -40.69376 -39.27569 -37.49240 -35.50420 -33.36495 -33.13981 -31.44179 -30.14625 -28.63269 -27.48629 -26.62656 -23.21696 -22.60539 -22.00471 -20.71894 -19.86243 -18.36968 -17.42513 -17.27137 -17.02290 -16.68058 -15.99826 -15.60761 -15.54404 -15.43827 -14.97085 -14.75465 -14.28510 -14.17497 -13.56011 -13.50613 -13.29221 -13.05160 -12.69034 -12.53529 -12.25321 -12.16249 -11.92992 -11.72475 -11.22007 -11.15305 -11.07087 -10.88659 -10.19461 -9.96609 -9.78459 -9.63816 -9.26404 -9.21469 -8.82194 -8.55599 -8.31331 -6.06450 -4.05134 0.82869 0.96039 2.78240 2.94003 3.12881 3.31342 3.38828 3.43352 3.55179 4.01556 4.26396 4.37706 4.44428 4.66508 4.74779 4.84161 4.92326 4.99493 5.08467 5.14397 5.19198 5.27709 5.37524 5.55012 5.63718 5.67573 5.78871 5.82426 6.00860 6.03256 6.37737 6.42266 6.45936 6.71954 6.80807 7.01910 7.23247 7.36666 7.66556 7.77154 8.37973 8.50408 8.97425 9.55916 11.06796 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.002624 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.901575 B =10666.827377 C =11074.945052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.136 3.864 4 C -0.181 4.181 5 C -0.114 4.114 6 C 0.060 3.940 7 F -0.142 7.142 8 C -0.102 4.102 9 C -0.066 4.066 10 C -0.097 4.097 11 C 0.513 3.487 12 O -0.538 6.538 13 N -0.727 5.727 14 C 0.115 3.885 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 18.950 16.652 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.090 3.910 4 C -0.200 4.200 5 C -0.133 4.133 6 C 0.041 3.959 7 F -0.121 7.121 8 C -0.121 4.121 9 C -0.067 4.067 10 C -0.136 4.136 11 C 0.299 3.701 12 O -0.415 6.415 13 N -0.378 5.378 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.871 19.092 15.847 28.927 hybrid contribution -0.189 0.349 -0.639 0.752 sum -15.059 19.441 15.208 28.914 Atomic orbital electron populations 1.23103 0.78125 1.04330 1.01305 1.86104 1.21524 1.26251 1.88236 1.18763 0.91596 0.84588 0.96025 1.21026 1.00355 0.91280 1.07337 1.20886 0.92688 0.98663 1.01053 1.17455 0.90807 0.80523 1.07135 1.91489 1.83319 1.42882 1.94378 1.20825 1.00707 0.90061 1.00525 1.18423 0.90307 0.94173 1.03830 1.20527 1.01320 0.95885 0.95909 1.20378 0.78329 0.80716 0.90707 1.90708 1.48002 1.56486 1.46276 1.46136 1.54563 1.26694 1.10437 1.21628 1.00658 0.97075 0.81419 1.21702 0.98505 0.93890 1.00997 1.19504 0.97121 0.96748 0.91555 1.21101 1.32485 1.07452 0.94938 0.90996 1.25028 0.94586 0.94664 0.99200 1.69909 1.38883 1.18302 1.27139 0.86778 0.80120 0.78845 0.83570 1.20239 1.21374 1.18905 0.92606 0.92449 0.87963 0.84455 0.84553 0.84058 0.87249 0.87740 0.76647 0.91905 0.91893 0.92118 0.92091 0.96337 0.96774 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.28 9.63 -19.56 -0.19 -3.47 16 3 C 0.14 1.50 6.66 -39.24 -0.26 1.24 16 4 C -0.18 -1.67 9.04 -39.44 -0.36 -2.02 16 5 C -0.11 -1.06 10.02 -39.54 -0.40 -1.46 16 6 C 0.06 0.65 7.30 -39.42 -0.29 0.36 16 7 F -0.14 -1.61 17.27 2.25 0.04 -1.58 16 8 C -0.10 -1.10 9.65 -39.53 -0.38 -1.48 16 9 C -0.07 -0.74 4.39 -104.48 -0.46 -1.20 16 10 C -0.10 -0.96 5.55 -29.03 -0.16 -1.12 16 11 C 0.51 7.24 7.82 -10.98 -0.09 7.15 16 12 O -0.54 -9.89 16.03 5.56 0.09 -9.80 16 13 N -0.73 -9.78 5.56 -60.30 -0.33 -10.12 16 14 C 0.12 1.91 5.67 -4.04 -0.02 1.89 16 15 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 16 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 17 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 18 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 21 Si 0.88 21.80 27.47 -169.99 -4.67 17.14 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.14 0.89 6.30 -52.48 -0.33 0.56 16 29 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 0.93 7.69 -51.93 -0.40 0.53 16 32 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.40 4.18 8.47 -40.82 -0.35 3.83 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -34.83 344.74 -6.80 -41.63 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.60 Total: -0.70 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.10 Total: -11.29 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.44 Total: -37.12 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.10 Total: -13.27 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.83 -6.80 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186207075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.570 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds