Wall clock time and date at job start Tue Mar 31 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47452 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47088 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00531 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00563 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99909 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47166 * 90.00266 * 21 19 17 23 23 H 1.48502 * 109.47140 * 210.00277 * 21 19 17 24 24 H 1.48493 * 109.47123 * 330.00186 * 21 19 17 25 25 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 26 26 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 27 27 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 31 31 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 32 32 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 33 33 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 35 35 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 36 36 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 37 37 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 38 38 H 1.08998 * 109.47061 * 300.00668 * 16 15 14 39 39 H 1.09002 * 109.46668 * 60.00355 * 16 15 14 40 40 H 0.96996 * 120.00667 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 8 3.9264 0.1497 -2.3335 13 7 5.1281 -1.5896 -1.6604 14 6 5.2940 -2.0642 -3.0364 15 6 6.1282 -3.3468 -3.0364 16 6 6.3009 -3.8429 -4.4734 17 6 7.1231 -5.1059 -4.4733 18 1 7.4865 -5.5137 -3.5416 19 6 7.4123 -5.7402 -5.6628 20 7 8.1294 -6.8427 -5.6628 21 14 6.7844 -5.0345 -7.2744 22 1 7.7866 -4.0862 -7.8234 23 1 6.5627 -6.1368 -8.2445 24 1 5.5048 -4.3196 -7.0366 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2127 2.3195 0.0005 29 1 1.3323 4.5114 0.0011 30 1 5.1356 2.5736 0.0102 31 1 3.7453 -0.7424 0.5897 32 1 5.2317 0.2246 0.4347 33 1 5.5256 -2.0829 -0.9259 34 1 4.3153 -2.2678 -3.4711 35 1 5.8015 -1.3003 -3.6256 36 1 7.1069 -3.1437 -2.6016 37 1 5.6203 -4.1105 -2.4473 38 1 5.3221 -4.0461 -4.9078 39 1 6.8086 -3.0794 -5.0628 40 1 8.3326 -7.2891 -6.4996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186207075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:07 Heat of formation + Delta-G solvation = -133.437216 kcal Electronic energy + Delta-G solvation = -22666.317224 eV Core-core repulsion = 18973.458635 eV Total energy + Delta-G solvation = -3692.858589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.82739 -41.47860 -40.32959 -38.21500 -36.95747 -35.11957 -34.06464 -33.18992 -30.88111 -29.73582 -28.37181 -27.79931 -24.72963 -23.38269 -22.95880 -22.22097 -21.15340 -19.11090 -18.93156 -18.17901 -18.01884 -17.93897 -16.84915 -16.70993 -16.67914 -16.35504 -16.15897 -15.65861 -15.56549 -15.41709 -14.79135 -14.65475 -14.35626 -14.13259 -13.82014 -13.70219 -13.63774 -13.22182 -12.83888 -12.75508 -12.71020 -12.59766 -11.93590 -11.86883 -11.81944 -11.75716 -11.58785 -11.32795 -10.92394 -10.76235 -10.05216 -10.02958 -9.06464 -8.29437 -6.33167 0.09780 0.20224 1.36582 1.38120 1.49943 1.70793 2.20124 2.31861 2.36177 2.65111 3.06307 3.26641 3.55148 3.70985 3.94895 4.06925 4.12695 4.18430 4.21085 4.35364 4.40633 4.42330 4.46925 4.51843 4.70582 4.73979 4.85375 4.89836 4.96869 5.04789 5.08696 5.10896 5.27382 5.42339 5.53345 5.56465 5.65442 5.70275 6.27689 6.34868 6.63513 6.75169 7.31534 7.32413 8.86973 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.002624 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.901575 B =10666.827377 C =11074.945052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.123 3.877 4 C -0.182 4.182 5 C -0.112 4.112 6 C 0.038 3.962 7 F -0.150 7.150 8 C -0.110 4.110 9 C -0.088 4.088 10 C -0.087 4.087 11 C 0.512 3.488 12 O -0.584 6.584 13 N -0.718 5.718 14 C 0.128 3.872 15 C -0.100 4.100 16 C -0.013 4.013 17 C -0.530 4.530 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.284 1.284 24 H -0.249 1.249 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.416 0.584 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 20.297 17.189 31.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.077 3.923 4 C -0.200 4.200 5 C -0.131 4.131 6 C 0.019 3.981 7 F -0.128 7.128 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.126 4.126 11 C 0.300 3.700 12 O -0.464 6.464 13 N -0.370 5.370 14 C 0.004 3.996 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.173 1.173 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.181 0.819 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.253 0.747 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.319 20.435 16.429 30.884 hybrid contribution 0.241 -0.112 -0.727 0.774 sum -16.078 20.323 15.702 30.300 Atomic orbital electron populations 1.23370 0.76364 1.05595 1.02422 1.86067 1.23482 1.26344 1.88214 1.19040 0.91955 0.85305 0.96006 1.21340 1.01684 0.90619 1.06405 1.21193 0.92337 0.99745 0.99836 1.17721 0.91655 0.80373 1.08349 1.91465 1.83548 1.43255 1.94573 1.21011 1.01422 0.90079 1.00342 1.18640 0.90894 0.94609 1.04767 1.20544 1.03144 0.95826 0.93093 1.21081 0.77030 0.79929 0.91978 1.90686 1.49831 1.57800 1.48070 1.45971 1.54546 1.26850 1.09657 1.21246 0.99449 0.95737 0.83181 1.21477 0.99357 0.94875 0.98038 1.19471 0.96065 0.94708 0.94821 1.21469 1.32554 1.09049 0.93722 0.94300 1.25973 0.94897 0.95004 1.03320 1.70052 1.40700 1.20038 1.28313 0.85709 0.80239 0.78327 0.78705 1.19275 1.20982 1.17258 0.90514 0.92237 0.86770 0.81873 0.82325 0.83041 0.85564 0.84655 0.74710 0.92927 0.92708 0.91566 0.91651 0.96241 0.96351 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.45 9.63 -92.92 -0.89 -7.35 16 3 C 0.12 2.52 6.66 22.49 0.15 2.67 16 4 C -0.18 -3.00 9.04 22.36 0.20 -2.79 16 5 C -0.11 -1.92 10.02 22.30 0.22 -1.69 16 6 C 0.04 0.79 7.30 22.37 0.16 0.96 16 7 F -0.15 -3.32 17.27 44.97 0.78 -2.54 16 8 C -0.11 -2.25 9.65 22.30 0.22 -2.03 16 9 C -0.09 -1.85 4.39 -19.77 -0.09 -1.94 16 10 C -0.09 -1.55 5.55 29.10 0.16 -1.39 16 11 C 0.51 13.67 7.82 87.66 0.69 14.35 16 12 O -0.58 -21.10 16.03 -3.03 -0.05 -21.15 16 13 N -0.72 -18.00 5.56 -463.06 -2.57 -20.58 16 14 C 0.13 4.08 5.67 86.38 0.49 4.57 16 15 C -0.10 -3.58 5.27 30.60 0.16 -3.41 16 16 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 17 C -0.53 -30.10 9.66 25.60 0.25 -29.85 16 18 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 19 C 0.00 0.29 5.47 84.65 0.46 0.75 16 20 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 21 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 25 H 0.08 0.53 7.66 -2.39 -0.02 0.51 16 26 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 27 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.16 1.68 6.30 -2.91 -0.02 1.66 16 29 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.13 1.83 7.69 -2.39 -0.02 1.82 16 32 H 0.14 1.54 8.05 -2.39 -0.02 1.52 16 33 H 0.42 7.69 8.47 -92.71 -0.79 6.91 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 39 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -76.07 344.74 3.97 -72.11 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.21 Total: 11.12 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.31 Total: -18.96 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.27 Total: -79.69 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.94 Total: -28.49 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -76.07 3.97 -72.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186207075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.329 kcal (2) G-P(sol) polarization free energy of solvation -76.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds