Wall clock time and date at job start Tue Mar 31 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 102.99711 * 2 1 4 4 C 1.53006 * 109.46883 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47078 * 179.97438 * 4 3 2 6 6 C 1.46896 * 111.00195 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47382 * 179.97438 * 6 5 4 8 8 C 1.38280 * 119.97205 * 270.02476 * 7 6 5 9 9 C 1.38250 * 120.10833 * 180.02562 * 8 7 6 10 10 C 1.38159 * 120.05742 * 359.68104 * 9 8 7 11 11 C 1.38710 * 119.94311 * 0.57011 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.72143 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.52997 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38129 * 119.97079 * 90.00085 * 7 6 5 24 24 H 1.08998 * 109.47263 * 299.99656 * 1 2 3 25 25 H 1.08990 * 109.47526 * 59.99821 * 1 2 3 26 26 H 1.09006 * 109.47124 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47319 * 60.00736 * 3 2 1 28 28 H 1.08996 * 109.47258 * 299.99798 * 3 2 1 29 29 H 1.08996 * 109.47046 * 59.99624 * 4 3 2 30 30 H 1.09006 * 109.46798 * 299.99892 * 4 3 2 31 31 H 1.00901 * 111.00271 * 303.95429 * 5 4 3 32 32 H 1.09005 * 109.46944 * 59.99947 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00389 * 6 5 4 34 34 H 1.08000 * 119.95034 * 0.02562 * 8 7 6 35 35 H 1.08006 * 119.97154 * 179.97438 * 9 8 7 36 36 H 1.08006 * 120.03137 * 180.29323 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.02418 * 0.02613 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 7 4.0727 3.3714 -0.0013 6 6 5.5274 3.5759 -0.0013 7 6 5.8270 5.0527 -0.0026 8 6 5.9641 5.7288 -1.2010 9 6 6.2395 7.0836 -1.2055 10 6 6.3721 7.7667 -0.0119 11 6 6.2403 7.0898 1.1916 12 8 6.3758 7.7584 2.3669 13 6 6.6597 9.1567 2.2889 14 6 6.7759 9.7332 3.7014 15 6 7.0747 11.2079 3.6191 16 1 7.1716 11.6863 2.6557 17 6 7.2233 11.9467 4.7737 18 7 7.1048 11.3642 5.9469 19 14 7.5944 13.7746 4.6718 20 1 7.6784 14.1838 3.2467 21 1 6.5113 14.5378 5.3424 22 1 8.8877 14.0555 5.3450 23 6 5.9642 5.7300 1.1934 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8031 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 4.1608 1.4704 -0.8908 30 1 4.1616 1.4703 0.8892 31 1 3.6411 3.8418 -0.7826 32 1 5.9587 3.1172 -0.8911 33 1 5.9587 3.1180 0.8889 34 1 5.8557 5.1977 -2.1351 35 1 6.3465 7.6093 -2.1428 36 1 6.5826 8.8260 -0.0159 37 1 7.5986 9.3077 1.7561 38 1 5.8542 9.6618 1.7559 39 1 5.8368 9.5822 4.2338 40 1 7.5811 9.2282 4.2349 41 1 7.2090 11.8840 6.7592 42 1 5.8571 5.2015 2.1291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237505954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:36 Heat of formation + Delta-G solvation = -48.413976 kcal Electronic energy + Delta-G solvation = -19926.034464 eV Core-core repulsion = 16803.075935 eV Total energy + Delta-G solvation = -3122.958529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08003 -38.97112 -37.20706 -35.47386 -33.24194 -32.58269 -30.89365 -30.24168 -29.67225 -27.10581 -25.97448 -23.56034 -23.37206 -23.14944 -21.54946 -19.13331 -18.17534 -17.30309 -17.23697 -16.93945 -16.89662 -16.71212 -16.40569 -15.99996 -15.60231 -14.87132 -14.72254 -14.46130 -14.34642 -14.29620 -14.20400 -13.93186 -13.77427 -13.25822 -13.06296 -12.81020 -12.73729 -12.60739 -12.51939 -12.36413 -12.29361 -11.80280 -11.59840 -11.55349 -11.36516 -11.00902 -10.63752 -9.84446 -9.45392 -9.08919 -8.71694 -8.27541 -6.41408 0.31728 0.53675 0.69199 1.40523 1.41661 1.55153 1.63558 2.27037 2.51269 2.76669 3.06837 3.41082 3.78857 3.88512 3.92584 3.98722 4.16241 4.23589 4.26030 4.32009 4.32327 4.34885 4.42002 4.48084 4.54878 4.65984 4.72770 4.79786 4.83633 4.87967 4.88501 5.10926 5.30993 5.44607 5.45611 5.52636 5.60519 5.68038 5.84923 5.96279 6.07047 6.37685 6.57977 6.73665 7.28818 8.85859 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.002067 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.292159 B =13544.231120 C =14303.313488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.307 6.307 3 C -0.073 4.073 4 C 0.081 3.919 5 N -0.691 5.691 6 C 0.108 3.892 7 C -0.046 4.046 8 C -0.151 4.151 9 C -0.078 4.078 10 C -0.222 4.222 11 C 0.104 3.896 12 O -0.343 6.343 13 C 0.085 3.915 14 C 0.027 3.973 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.257 1.257 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.152 4.152 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.350 0.650 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.059 0.941 39 H -0.002 1.002 40 H -0.002 1.002 41 H 0.267 0.733 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 -20.195 -18.948 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.083 6.083 3 C -0.221 4.221 4 C -0.049 4.049 5 N -0.324 5.324 6 C -0.020 4.020 7 C -0.047 4.047 8 C -0.169 4.169 9 C -0.095 4.095 10 C -0.241 4.241 11 C 0.059 3.941 12 O -0.258 6.258 13 C 0.011 3.989 14 C -0.010 4.010 15 C -0.583 4.583 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.801 3.199 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.171 4.171 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.806 -21.059 -17.884 28.997 hybrid contribution -0.381 1.915 -0.189 1.962 sum -9.188 -19.144 -18.073 27.884 Atomic orbital electron populations 1.23427 0.91025 1.07515 1.05845 1.86989 1.10914 1.12168 1.98222 1.23266 0.99710 0.93241 1.05896 1.21548 0.92913 0.88533 1.01863 1.60388 1.09657 1.11141 1.51192 1.20804 0.88236 0.90470 1.02511 1.19645 0.97390 0.95869 0.91764 1.21222 1.03348 0.94376 0.97994 1.21228 0.96250 0.94726 0.97337 1.21513 1.08787 1.01151 0.92681 1.19536 0.96386 0.92831 0.85329 1.86086 1.85695 1.24511 1.29495 1.22843 0.99443 0.76660 0.99937 1.18977 0.95940 0.95225 0.90876 1.21429 1.49678 0.93586 0.93637 0.91065 1.26070 0.94573 1.04479 0.94714 1.70135 1.50156 1.38413 0.98330 0.85210 0.77883 0.77832 0.78966 1.18079 1.20226 1.20206 1.20411 1.06097 0.91046 0.99571 0.89864 0.89388 0.86991 0.89651 0.88990 0.93447 0.90784 0.83097 0.91745 0.90221 0.82981 0.83051 0.85614 0.92206 0.92270 0.98400 0.98347 0.92435 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.76 113.37 1.22 0.23 16 2 S -0.31 -4.60 22.38 -56.49 -1.26 -5.87 16 3 C -0.07 -0.97 6.20 71.98 0.45 -0.52 16 4 C 0.08 1.16 5.69 86.31 0.49 1.65 16 5 N -0.69 -11.31 6.49 -517.93 -3.36 -14.67 16 6 C 0.11 1.86 5.81 85.56 0.50 2.36 16 7 C -0.05 -1.05 5.39 -19.88 -0.11 -1.16 16 8 C -0.15 -2.98 9.70 22.28 0.22 -2.76 16 9 C -0.08 -1.76 10.04 22.25 0.22 -1.53 16 10 C -0.22 -6.77 9.04 22.36 0.20 -6.57 16 11 C 0.10 3.75 6.69 22.50 0.15 3.90 16 12 O -0.34 -15.08 10.14 -92.43 -0.94 -16.02 16 13 C 0.09 3.84 4.68 71.98 0.34 4.17 16 14 C 0.03 1.51 5.34 29.85 0.16 1.67 16 15 C -0.55 -31.15 9.11 25.60 0.23 -30.91 16 16 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 19 Si 0.98 43.76 29.54 68.60 2.03 45.78 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 23 C -0.15 -4.68 9.64 22.37 0.22 -4.46 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 0.62 8.14 -2.40 -0.02 0.60 16 26 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.35 4.92 8.72 -89.69 -0.78 4.13 16 32 H 0.06 0.84 8.08 -2.38 -0.02 0.82 16 33 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.13 3.82 6.30 -2.91 -0.02 3.81 16 37 H 0.06 2.52 7.67 -2.39 -0.02 2.50 16 38 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 42 H 0.12 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -68.39 366.71 1.70 -66.69 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.21 Total: 14.47 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 4.75 Total: -33.48 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -3.08 Total: -71.57 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.94 Total: -16.02 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.26 Total: -5.87 kcal Total: -68.39 1.70 -66.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237505954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.274 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds