Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34228 * 117.00111 * 2 1 4 4 O 1.20832 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00322 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47305 * 299.99920 * 5 3 2 7 7 N 1.46907 * 109.47216 * 180.02562 * 5 3 2 8 8 C 1.46900 * 111.00001 * 84.99821 * 7 5 3 9 9 C 1.53005 * 109.46887 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46812 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46883 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00055 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47059 * 90.00225 * 15 13 11 17 17 H 1.48497 * 109.47017 * 210.00047 * 15 13 11 18 18 H 1.48498 * 109.47536 * 330.00369 * 15 13 11 19 19 C 1.50696 * 109.47302 * 60.00272 * 5 3 2 20 20 C 1.38248 * 119.97128 * 259.99948 * 19 5 3 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 5 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47283 * 299.99106 * 1 2 3 28 28 H 1.08999 * 109.47655 * 59.99903 * 1 2 3 29 29 H 1.00901 * 110.99804 * 208.95498 * 7 5 3 30 30 H 1.08996 * 109.46914 * 299.99888 * 8 7 5 31 31 H 1.08998 * 109.47109 * 60.00410 * 8 7 5 32 32 H 1.09003 * 109.46939 * 299.99976 * 9 8 7 33 33 H 1.08998 * 109.46938 * 60.00272 * 9 8 7 34 34 H 1.08995 * 109.47810 * 299.99779 * 10 9 8 35 35 H 1.08998 * 109.47017 * 60.00479 * 10 9 8 36 36 H 0.96996 * 120.00382 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.98915 * 359.97438 * 20 19 5 38 38 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 40 40 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9827 2.6837 0.0002 8 6 4.0179 3.2215 1.3667 9 6 4.4543 4.6875 1.3267 10 6 4.4903 5.2478 2.7499 11 6 4.9208 6.6915 2.7105 12 1 5.1457 7.1624 1.7650 13 6 5.0264 7.4116 3.8817 14 7 4.7520 6.8384 5.0330 15 14 5.5593 9.2013 3.8328 16 1 4.3628 10.0704 3.6977 17 1 6.2769 9.5385 5.0884 18 1 6.4616 9.4177 2.6735 19 6 4.1046 0.5921 -1.2314 20 6 4.5991 -0.6961 -1.1461 21 6 5.0926 -1.3235 -2.2742 22 6 5.0922 -0.6612 -3.4901 23 9 5.5748 -1.2734 -4.5935 24 6 4.6019 0.6310 -3.5732 25 6 4.1036 1.2543 -2.4449 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 4.8755 2.7970 -0.4562 30 1 3.0250 3.1504 1.8108 31 1 4.7255 2.6476 1.9649 32 1 5.4471 4.7590 0.8824 33 1 3.7463 5.2611 0.7286 34 1 3.4974 5.1764 3.1938 35 1 5.1981 4.6743 3.3484 36 1 4.8267 7.3448 5.8569 37 1 4.5997 -1.2124 -0.1974 38 1 5.4785 -2.3299 -2.2074 39 1 4.6047 1.1501 -4.5204 40 1 3.7167 2.2605 -2.5104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265384095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = -111.431673 kcal Electronic energy + Delta-G solvation = -22956.774426 eV Core-core repulsion = 19264.870069 eV Total energy + Delta-G solvation = -3691.904357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.17047 -40.73711 -39.28913 -36.95513 -35.87740 -33.81055 -32.14621 -31.46719 -30.15131 -28.37794 -26.78459 -25.17729 -23.43710 -22.66906 -22.21561 -20.61442 -20.07683 -18.11424 -17.73686 -16.92130 -16.70036 -16.36716 -16.19695 -15.84987 -15.61801 -15.07093 -14.57827 -14.47584 -14.18527 -13.85617 -13.73679 -13.45462 -13.28742 -13.05054 -12.58907 -12.27760 -12.19379 -12.01558 -11.52188 -11.46712 -11.26261 -10.85166 -10.82080 -10.66452 -10.51588 -10.43629 -9.69771 -9.40925 -9.36282 -9.06820 -8.88802 -8.44448 -8.32134 -5.97555 -3.99445 0.73478 0.93611 2.23681 2.54881 3.25516 3.34295 3.40165 3.43732 3.94922 4.13018 4.30671 4.46453 4.51023 4.58957 4.79823 4.91587 4.99649 5.00307 5.07886 5.17525 5.38425 5.39791 5.58081 5.63278 5.71598 5.78857 5.81809 5.92225 6.13304 6.26062 6.33541 6.54204 6.62747 6.71501 7.09106 7.15447 7.40622 7.70438 7.82289 7.85338 8.02793 8.45837 9.07634 9.64403 11.13994 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.003058 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.422741 B = 9155.574047 C =10237.348050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.472 6.472 5 C 0.143 3.857 6 H 0.091 0.909 7 N -0.668 5.668 8 C 0.059 3.941 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.105 4.105 20 C -0.066 4.066 21 C -0.156 4.156 22 C 0.103 3.897 23 F -0.141 7.141 24 C -0.155 4.155 25 C -0.065 4.065 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.354 0.646 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -19.960 -14.723 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.355 6.355 5 C 0.031 3.969 6 H 0.109 0.891 7 N -0.302 5.302 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.175 4.175 22 C 0.083 3.917 23 F -0.119 7.119 24 C -0.174 4.174 25 C -0.083 4.083 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.175 0.825 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.634 -19.385 -14.698 24.598 hybrid contribution 0.885 0.505 0.267 1.053 sum -2.749 -18.880 -14.431 23.922 Atomic orbital electron populations 1.23224 0.76513 1.03384 1.02616 1.86477 1.23211 1.33689 1.84607 1.23571 0.91481 0.81470 0.73327 1.90708 1.66151 1.36083 1.42600 1.19789 0.88274 0.91835 0.96987 0.89123 1.60134 1.36185 1.12446 1.21424 1.22283 1.01003 0.97610 0.86021 1.21602 0.99666 0.91703 1.01303 1.19058 0.97175 0.95472 0.89806 1.21250 1.45240 0.96387 0.92761 0.92630 1.25029 0.95579 0.98342 0.95590 1.69963 1.49463 1.36587 0.97629 0.86590 0.78728 0.85295 0.77365 1.20666 1.21285 1.19868 1.19589 1.01695 0.95045 0.94237 1.20912 0.95520 0.93475 0.98583 1.21094 1.03619 1.01368 0.91375 1.17812 0.98679 0.92081 0.83091 1.91506 1.85721 1.82945 1.51746 1.21184 1.01834 0.93838 1.00501 1.21063 0.96009 1.00609 0.90624 0.88308 0.91855 0.92021 0.82458 0.91035 0.95177 0.93489 0.92238 0.96537 0.96784 0.93051 0.84506 0.84470 0.84419 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.55 101.05 1.07 1.40 16 2 O -0.36 -4.28 10.48 -39.25 -0.41 -4.69 16 3 C 0.46 6.42 7.11 36.00 0.26 6.67 16 4 O -0.47 -8.21 15.67 -18.76 -0.29 -8.50 16 5 C 0.14 1.71 2.73 -70.02 -0.19 1.52 16 6 H 0.09 0.97 7.66 -51.93 -0.40 0.57 16 7 N -0.67 -9.39 5.23 -109.19 -0.57 -9.96 16 8 C 0.06 1.00 5.38 -3.82 -0.02 0.98 16 9 C -0.10 -2.17 5.41 -26.73 -0.14 -2.31 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.10 -1.06 4.64 -104.62 -0.49 -1.55 16 20 C -0.07 -0.57 9.67 -39.59 -0.38 -0.95 16 21 C -0.16 -1.31 10.03 -39.52 -0.40 -1.70 16 22 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 23 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 24 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 25 C -0.06 -0.65 9.00 -39.59 -0.36 -1.01 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.35 4.41 7.99 -39.29 -0.31 4.10 16 30 H 0.07 1.34 7.62 -51.93 -0.40 0.95 16 31 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 0.90 8.04 -52.49 -0.42 0.48 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.15 1.51 7.72 -52.49 -0.41 1.11 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -33.06 350.40 -7.83 -40.89 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.70 Total: -0.68 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.89 Total: -11.31 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.17 Total: -36.48 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.71 Total: -13.19 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.06 -7.83 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265384095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.545 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds