Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34228 * 117.00111 * 2 1 4 4 O 1.20832 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00322 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47305 * 299.99920 * 5 3 2 7 7 N 1.46907 * 109.47216 * 180.02562 * 5 3 2 8 8 C 1.46900 * 111.00001 * 84.99821 * 7 5 3 9 9 C 1.53005 * 109.46887 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46812 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46883 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00055 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47059 * 90.00225 * 15 13 11 17 17 H 1.48497 * 109.47017 * 210.00047 * 15 13 11 18 18 H 1.48498 * 109.47536 * 330.00369 * 15 13 11 19 19 C 1.50696 * 109.47302 * 60.00272 * 5 3 2 20 20 C 1.38248 * 119.97128 * 259.99948 * 19 5 3 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 5 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47283 * 299.99106 * 1 2 3 28 28 H 1.08999 * 109.47655 * 59.99903 * 1 2 3 29 29 H 1.00901 * 110.99804 * 208.95498 * 7 5 3 30 30 H 1.08996 * 109.46914 * 299.99888 * 8 7 5 31 31 H 1.08998 * 109.47109 * 60.00410 * 8 7 5 32 32 H 1.09003 * 109.46939 * 299.99976 * 9 8 7 33 33 H 1.08998 * 109.46938 * 60.00272 * 9 8 7 34 34 H 1.08995 * 109.47810 * 299.99779 * 10 9 8 35 35 H 1.08998 * 109.47017 * 60.00479 * 10 9 8 36 36 H 0.96996 * 120.00382 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.98915 * 359.97438 * 20 19 5 38 38 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 40 40 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9827 2.6837 0.0002 8 6 4.0179 3.2215 1.3667 9 6 4.4543 4.6875 1.3267 10 6 4.4903 5.2478 2.7499 11 6 4.9208 6.6915 2.7105 12 1 5.1457 7.1624 1.7650 13 6 5.0264 7.4116 3.8817 14 7 4.7520 6.8384 5.0330 15 14 5.5593 9.2013 3.8328 16 1 4.3628 10.0704 3.6977 17 1 6.2769 9.5385 5.0884 18 1 6.4616 9.4177 2.6735 19 6 4.1046 0.5921 -1.2314 20 6 4.5991 -0.6961 -1.1461 21 6 5.0926 -1.3235 -2.2742 22 6 5.0922 -0.6612 -3.4901 23 9 5.5748 -1.2734 -4.5935 24 6 4.6019 0.6310 -3.5732 25 6 4.1036 1.2543 -2.4449 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 4.8755 2.7970 -0.4562 30 1 3.0250 3.1504 1.8108 31 1 4.7255 2.6476 1.9649 32 1 5.4471 4.7590 0.8824 33 1 3.7463 5.2611 0.7286 34 1 3.4974 5.1764 3.1938 35 1 5.1981 4.6743 3.3484 36 1 4.8267 7.3448 5.8569 37 1 4.5997 -1.2124 -0.1974 38 1 5.4785 -2.3299 -2.2074 39 1 4.6047 1.1501 -4.5204 40 1 3.7167 2.2605 -2.5104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265384095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = -131.007772 kcal Electronic energy + Delta-G solvation = -22957.623310 eV Core-core repulsion = 19264.870069 eV Total energy + Delta-G solvation = -3692.753241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.91449 -41.73824 -40.09068 -38.05244 -37.10711 -35.60119 -33.78444 -32.17172 -31.51940 -29.25884 -28.23935 -26.52309 -24.51251 -23.83503 -23.26781 -21.99412 -21.41763 -18.99861 -18.59148 -18.49146 -17.74274 -17.67440 -17.20081 -16.67677 -16.59049 -16.49413 -16.21752 -15.48854 -15.35654 -14.82636 -14.62203 -14.46958 -14.24799 -14.14840 -13.98465 -13.73735 -13.34865 -13.28625 -12.92615 -12.75049 -12.63111 -12.46655 -12.27108 -11.98611 -11.77617 -11.62624 -11.53016 -11.39004 -11.13072 -10.54884 -10.08486 -9.66913 -9.58584 -8.19745 -6.30495 -0.00697 0.25910 1.18252 1.40362 1.42002 1.53068 1.62961 2.41299 2.52109 3.10391 3.13524 3.23610 3.44779 3.76222 3.85714 3.95924 4.05520 4.22364 4.31378 4.31933 4.33598 4.34799 4.45294 4.68750 4.70131 4.87327 4.94188 4.98146 5.06204 5.13596 5.20353 5.23988 5.34278 5.40533 5.52193 5.74568 5.79519 5.86314 5.87717 6.26211 6.32078 6.78763 6.86343 7.38594 8.92315 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.003058 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.422741 B = 9155.574047 C =10237.348050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.517 6.517 5 C 0.146 3.854 6 H 0.111 0.889 7 N -0.672 5.672 8 C 0.075 3.925 9 C -0.090 4.090 10 C 0.026 3.974 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.262 1.262 19 C -0.111 4.111 20 C -0.061 4.061 21 C -0.150 4.150 22 C 0.092 3.908 23 F -0.146 7.146 24 C -0.157 4.157 25 C -0.073 4.073 26 H 0.136 0.864 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.365 0.635 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.047 0.953 34 H -0.014 1.014 35 H -0.003 1.003 36 H 0.264 0.736 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.149 0.851 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 -21.007 -15.612 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.304 3.696 4 O -0.404 6.404 5 C 0.034 3.966 6 H 0.128 0.872 7 N -0.308 5.308 8 C -0.054 4.054 9 C -0.128 4.128 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.186 1.186 19 C -0.112 4.112 20 C -0.079 4.079 21 C -0.169 4.169 22 C 0.072 3.928 23 F -0.125 7.125 24 C -0.176 4.176 25 C -0.092 4.092 26 H 0.154 0.846 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.188 0.812 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.004 0.996 35 H 0.015 0.985 36 H 0.072 0.928 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.167 0.833 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.748 -20.464 -15.612 25.886 hybrid contribution 0.557 0.738 0.521 1.061 sum -2.191 -19.726 -15.092 24.934 Atomic orbital electron populations 1.23510 0.75088 1.05656 1.02157 1.86470 1.24616 1.32437 1.83933 1.24004 0.92253 0.81368 0.71967 1.90693 1.67224 1.37539 1.44910 1.19828 0.87209 0.90657 0.98872 0.87160 1.59905 1.37037 1.14413 1.19398 1.21908 0.99912 0.95617 0.87967 1.21335 1.00185 0.93807 0.97503 1.18955 0.94679 0.94888 0.92645 1.21704 1.45421 0.97787 0.93156 0.92206 1.25992 0.95439 1.03379 0.95120 1.70092 1.50334 1.38618 0.98394 0.85440 0.78567 0.79124 0.77884 1.20017 1.20595 1.18576 1.19485 1.02638 0.95823 0.93253 1.21138 0.94423 0.92661 0.99695 1.21355 1.02692 1.02228 0.90625 1.18019 0.98985 0.92306 0.83453 1.91494 1.85840 1.83005 1.52124 1.21289 1.01511 0.93992 1.00764 1.21021 0.96623 1.00464 0.91072 0.84641 0.92562 0.92342 0.81226 0.93109 0.93904 0.92190 0.93453 0.99582 0.98496 0.92772 0.82145 0.82190 0.83319 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.55 113.37 1.20 1.70 16 2 O -0.36 -7.98 10.48 -51.40 -0.54 -8.51 16 3 C 0.46 12.63 7.11 71.24 0.51 13.14 16 4 O -0.52 -18.34 15.67 21.95 0.34 -18.00 16 5 C 0.15 3.30 2.73 43.42 0.12 3.42 16 6 H 0.11 2.11 7.66 -2.39 -0.02 2.09 16 7 N -0.67 -18.50 5.23 -499.36 -2.61 -21.11 16 8 C 0.07 2.55 5.38 86.30 0.46 3.02 16 9 C -0.09 -3.78 5.41 30.59 0.17 -3.62 16 10 C 0.03 1.40 4.97 29.85 0.15 1.55 16 11 C -0.54 -31.57 9.11 25.60 0.23 -31.33 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 14 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 15 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 C -0.11 -2.06 4.64 -19.86 -0.09 -2.15 16 20 C -0.06 -0.86 9.67 22.26 0.22 -0.65 16 21 C -0.15 -2.09 10.03 22.31 0.22 -1.87 16 22 C 0.09 1.57 7.30 22.38 0.16 1.73 16 23 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 24 C -0.16 -2.69 10.03 22.31 0.22 -2.47 16 25 C -0.07 -1.40 9.00 22.26 0.20 -1.20 16 26 H 0.14 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 28 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.36 8.67 7.99 -89.69 -0.72 7.95 16 30 H 0.05 1.95 7.62 -2.39 -0.02 1.94 16 31 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 37 H 0.16 1.49 8.04 -2.91 -0.02 1.47 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.14 2.81 7.72 -2.91 -0.02 2.79 16 Total: -1.00 -72.25 350.40 4.84 -67.41 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.33 Total: 10.96 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.23 Total: -18.37 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.33 Total: -78.50 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.19 Total: -26.51 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.25 4.84 -67.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265384095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.600 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds