Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00051 * 2 1 4 4 O 1.20822 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00062 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47359 * 300.00930 * 5 3 2 7 7 C 1.53011 * 109.46956 * 60.00387 * 5 3 2 8 8 C 1.50697 * 109.47155 * 184.99913 * 7 5 3 9 9 C 1.38244 * 119.97201 * 89.99868 * 8 7 5 10 10 C 1.38205 * 120.02298 * 179.97438 * 9 8 7 11 11 C 1.38459 * 119.97412 * 0.24026 * 10 9 8 12 12 F 1.35099 * 120.02759 * 179.72396 * 11 10 9 13 13 C 1.38466 * 119.94836 * 359.48301 * 11 10 9 14 14 C 1.38196 * 119.97140 * 0.53984 * 13 11 10 15 15 N 1.46895 * 109.47529 * 180.02562 * 5 3 2 16 16 C 1.46898 * 111.00098 * 85.00135 * 15 5 3 17 17 C 1.53001 * 109.47643 * 180.02562 * 16 15 5 18 18 C 1.50699 * 109.47146 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99848 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47192 * 89.99955 * 22 20 18 24 24 H 1.48502 * 109.47222 * 209.99706 * 22 20 18 25 25 H 1.48493 * 109.47065 * 329.99834 * 22 20 18 26 26 H 1.08996 * 109.47391 * 300.00220 * 1 2 3 27 27 H 1.08996 * 109.46689 * 59.99882 * 1 2 3 28 28 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46802 * 64.99980 * 7 5 3 30 30 H 1.09000 * 109.46596 * 305.00021 * 7 5 3 31 31 H 1.07999 * 119.98898 * 359.97438 * 9 8 7 32 32 H 1.08002 * 120.00949 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.00962 * 180.25357 * 13 11 10 34 34 H 1.07999 * 119.98560 * 179.70313 * 14 13 11 35 35 H 1.00902 * 110.99834 * 321.05252 * 15 5 3 36 36 H 1.09002 * 109.47259 * 300.00860 * 16 15 5 37 37 H 1.09002 * 109.46938 * 59.99902 * 16 15 5 38 38 H 1.08995 * 109.46587 * 300.00230 * 17 16 15 39 39 H 1.08995 * 109.46771 * 60.00044 * 17 16 15 40 40 H 0.96997 * 120.00082 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8907 7 6 4.1138 0.5810 -1.2485 8 6 5.6193 0.5516 -1.1876 9 6 6.2657 -0.5160 -0.5931 10 6 7.6464 -0.5443 -0.5372 11 6 8.3819 0.4996 -1.0723 12 9 9.7314 0.4757 -1.0132 13 6 7.7335 1.5656 -1.6725 14 6 6.3528 1.5920 -1.7269 15 7 3.9829 2.6835 0.0011 16 6 4.0171 3.2219 1.3674 17 6 4.4537 4.6877 1.3273 18 6 4.4893 5.2398 2.7291 19 1 4.2265 4.6084 3.5650 20 6 4.8565 6.5511 2.9444 21 7 5.1761 7.3202 1.9265 22 14 4.9000 7.2357 4.6819 23 1 6.2493 7.0225 5.2643 24 1 4.5993 8.6896 4.6489 25 1 3.8861 6.5393 5.5138 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.7967 1.1280 -2.1363 30 1 3.7320 -0.4389 -1.2943 31 1 5.6917 -1.3283 -0.1723 32 1 8.1512 -1.3783 -0.0723 33 1 8.3063 2.3784 -2.0939 34 1 5.8467 2.4257 -2.1907 35 1 3.3831 3.2381 -0.5912 36 1 3.0239 3.1509 1.8109 37 1 4.7242 2.6480 1.9664 38 1 5.4467 4.7590 0.8837 39 1 3.7462 5.2612 0.7285 40 1 5.4341 8.2429 2.0780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275689320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = -117.577911 kcal Electronic energy + Delta-G solvation = -23372.459612 eV Core-core repulsion = 19680.288734 eV Total energy + Delta-G solvation = -3692.170878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.78209 -40.65872 -39.08740 -37.02283 -35.72632 -33.59623 -32.16962 -31.02468 -29.90109 -28.21415 -27.09126 -24.50078 -23.61146 -22.92025 -21.39150 -20.70111 -20.33387 -17.77465 -17.56411 -17.03501 -16.50973 -16.26458 -16.18476 -15.47529 -15.37620 -14.66857 -14.43952 -14.32329 -13.94826 -13.78073 -13.45168 -13.31573 -13.19623 -12.89809 -12.40726 -12.27181 -12.11898 -11.64466 -11.62914 -11.39249 -11.14688 -10.93128 -10.87657 -10.84170 -10.54474 -10.52800 -10.05549 -9.42122 -9.15922 -8.98557 -8.44901 -8.35606 -8.12141 -5.98668 -4.00911 1.21446 1.36267 2.20356 2.70674 3.33305 3.39260 3.42508 3.68343 4.32068 4.37060 4.50630 4.67139 4.80000 4.92514 4.99987 5.00239 5.06484 5.13467 5.16448 5.36005 5.37748 5.39332 5.43535 5.69098 5.78318 6.02820 6.11732 6.21049 6.23414 6.30446 6.36646 6.38971 6.64834 6.93469 6.99774 7.21636 7.62770 7.71217 7.78042 7.88577 8.05461 8.43033 9.05509 9.62656 11.12818 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.005157 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.800251 B = 5427.733675 C = 8056.340015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.429 3.571 4 O -0.499 6.499 5 C 0.100 3.900 6 H 0.115 0.885 7 C -0.062 4.062 8 C -0.078 4.078 9 C -0.091 4.091 10 C -0.159 4.159 11 C 0.091 3.909 12 F -0.146 7.146 13 C -0.153 4.153 14 C -0.052 4.052 15 N -0.654 5.654 16 C 0.062 3.938 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.053 0.947 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.350 0.650 36 H 0.022 0.978 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -18.865 -8.677 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.278 6.278 3 C 0.269 3.731 4 O -0.385 6.385 5 C -0.013 4.013 6 H 0.132 0.868 7 C -0.100 4.100 8 C -0.078 4.078 9 C -0.109 4.109 10 C -0.178 4.178 11 C 0.072 3.928 12 F -0.124 7.124 13 C -0.171 4.171 14 C -0.071 4.071 15 N -0.285 5.285 16 C -0.066 4.066 17 C -0.009 4.009 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.559 -18.511 -8.726 20.524 hybrid contribution -0.912 0.738 1.334 1.776 sum -2.471 -17.773 -7.392 19.407 Atomic orbital electron populations 1.23228 0.77066 1.03318 1.02516 1.86545 1.23025 1.34125 1.84129 1.25615 0.93839 0.81458 0.72144 1.90710 1.66846 1.36333 1.44593 1.21662 0.83751 0.94651 1.01233 0.86770 1.20524 0.91687 1.00918 0.96859 1.19573 0.94860 0.94535 0.98827 1.20862 0.93275 0.98317 0.98477 1.21014 0.94649 0.98891 1.03218 1.17751 0.76687 0.96843 1.01528 1.91476 1.29571 1.96689 1.94691 1.21179 0.95652 0.98139 1.02167 1.20926 0.92264 0.97151 0.96712 1.61083 1.53874 0.99266 1.14309 1.22297 0.98658 0.99722 0.85934 1.19023 0.97197 0.87610 0.97043 1.21137 1.45754 0.96283 0.92761 0.92844 1.24979 0.95341 0.97062 0.96872 1.69968 1.46035 1.07161 1.30030 0.86597 0.78344 0.78167 0.84907 1.20615 1.21210 1.19960 0.92025 0.92062 0.88373 0.90183 0.89558 0.85301 0.85229 0.84909 0.84599 0.82978 0.95925 0.92139 0.95585 0.96618 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.33 10.37 -39.25 -0.41 -4.74 16 3 C 0.43 6.12 7.09 36.01 0.26 6.38 16 4 O -0.50 -8.85 15.05 -18.75 -0.28 -9.13 16 5 C 0.10 1.33 2.49 -68.86 -0.17 1.16 16 6 H 0.11 1.47 7.80 -51.93 -0.40 1.07 16 7 C -0.06 -0.64 4.99 -27.88 -0.14 -0.78 16 8 C -0.08 -0.89 4.95 -104.62 -0.52 -1.41 16 9 C -0.09 -0.96 9.70 -39.59 -0.38 -1.35 16 10 C -0.16 -1.81 10.03 -39.51 -0.40 -2.21 16 11 C 0.09 1.19 7.30 -39.42 -0.29 0.91 16 12 F -0.15 -2.02 17.27 2.25 0.04 -1.98 16 13 C -0.15 -1.97 10.03 -39.51 -0.40 -2.37 16 14 C -0.05 -0.66 9.31 -39.59 -0.37 -1.03 16 15 N -0.65 -10.92 5.49 -107.95 -0.59 -11.51 16 16 C 0.06 1.29 5.32 -3.82 -0.02 1.27 16 17 C 0.03 0.75 5.23 -27.88 -0.15 0.60 16 18 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 19 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 22 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.35 6.09 7.75 -39.29 -0.30 5.79 16 36 H 0.02 0.49 7.62 -51.93 -0.40 0.10 16 37 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -32.59 350.09 -7.87 -40.46 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.70 Total: 2.10 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.92 Total: -11.07 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.14 Total: -37.87 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.69 Total: -13.87 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.59 -7.87 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275689320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.117 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds