Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00051 * 2 1 4 4 O 1.20822 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00062 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47359 * 300.00930 * 5 3 2 7 7 C 1.53011 * 109.46956 * 60.00387 * 5 3 2 8 8 C 1.50697 * 109.47155 * 184.99913 * 7 5 3 9 9 C 1.38244 * 119.97201 * 89.99868 * 8 7 5 10 10 C 1.38205 * 120.02298 * 179.97438 * 9 8 7 11 11 C 1.38459 * 119.97412 * 0.24026 * 10 9 8 12 12 F 1.35099 * 120.02759 * 179.72396 * 11 10 9 13 13 C 1.38466 * 119.94836 * 359.48301 * 11 10 9 14 14 C 1.38196 * 119.97140 * 0.53984 * 13 11 10 15 15 N 1.46895 * 109.47529 * 180.02562 * 5 3 2 16 16 C 1.46898 * 111.00098 * 85.00135 * 15 5 3 17 17 C 1.53001 * 109.47643 * 180.02562 * 16 15 5 18 18 C 1.50699 * 109.47146 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99848 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00273 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47192 * 89.99955 * 22 20 18 24 24 H 1.48502 * 109.47222 * 209.99706 * 22 20 18 25 25 H 1.48493 * 109.47065 * 329.99834 * 22 20 18 26 26 H 1.08996 * 109.47391 * 300.00220 * 1 2 3 27 27 H 1.08996 * 109.46689 * 59.99882 * 1 2 3 28 28 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46802 * 64.99980 * 7 5 3 30 30 H 1.09000 * 109.46596 * 305.00021 * 7 5 3 31 31 H 1.07999 * 119.98898 * 359.97438 * 9 8 7 32 32 H 1.08002 * 120.00949 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.00962 * 180.25357 * 13 11 10 34 34 H 1.07999 * 119.98560 * 179.70313 * 14 13 11 35 35 H 1.00902 * 110.99834 * 321.05252 * 15 5 3 36 36 H 1.09002 * 109.47259 * 300.00860 * 16 15 5 37 37 H 1.09002 * 109.46938 * 59.99902 * 16 15 5 38 38 H 1.08995 * 109.46587 * 300.00230 * 17 16 15 39 39 H 1.08995 * 109.46771 * 60.00044 * 17 16 15 40 40 H 0.96997 * 120.00082 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8907 7 6 4.1138 0.5810 -1.2485 8 6 5.6193 0.5516 -1.1876 9 6 6.2657 -0.5160 -0.5931 10 6 7.6464 -0.5443 -0.5372 11 6 8.3819 0.4996 -1.0723 12 9 9.7314 0.4757 -1.0132 13 6 7.7335 1.5656 -1.6725 14 6 6.3528 1.5920 -1.7269 15 7 3.9829 2.6835 0.0011 16 6 4.0171 3.2219 1.3674 17 6 4.4537 4.6877 1.3273 18 6 4.4893 5.2398 2.7291 19 1 4.2265 4.6084 3.5650 20 6 4.8565 6.5511 2.9444 21 7 5.1761 7.3202 1.9265 22 14 4.9000 7.2357 4.6819 23 1 6.2493 7.0225 5.2643 24 1 4.5993 8.6896 4.6489 25 1 3.8861 6.5393 5.5138 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.7967 1.1280 -2.1363 30 1 3.7320 -0.4389 -1.2943 31 1 5.6917 -1.3283 -0.1723 32 1 8.1512 -1.3783 -0.0723 33 1 8.3063 2.3784 -2.0939 34 1 5.8467 2.4257 -2.1907 35 1 3.3831 3.2381 -0.5912 36 1 3.0239 3.1509 1.8109 37 1 4.7242 2.6480 1.9664 38 1 5.4467 4.7590 0.8837 39 1 3.7462 5.2612 0.7285 40 1 5.4341 8.2429 2.0780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275689320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = -136.909147 kcal Electronic energy + Delta-G solvation = -23373.297877 eV Core-core repulsion = 19680.288734 eV Total energy + Delta-G solvation = -3693.009143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.80572 -41.76693 -40.00796 -38.17210 -37.01677 -35.40039 -33.74050 -31.92513 -31.33918 -29.51370 -28.13806 -26.08403 -24.96230 -23.85254 -22.63985 -22.23107 -21.45713 -18.89919 -18.57804 -18.51555 -18.05421 -17.46715 -17.20326 -16.57139 -16.49064 -16.26729 -15.87777 -15.61349 -15.08259 -14.86440 -14.49971 -14.44167 -14.29838 -14.21195 -14.05327 -13.45774 -13.15649 -13.06702 -12.87508 -12.76009 -12.55396 -12.38528 -12.38269 -12.12005 -11.81327 -11.74820 -11.58922 -11.42028 -11.27002 -10.57316 -9.90064 -9.60062 -9.36187 -8.21066 -6.32112 0.26859 0.46007 1.09290 1.38734 1.40424 1.51084 1.72383 2.39229 2.75622 3.11158 3.12758 3.43340 3.68335 3.90865 3.99761 4.07586 4.10866 4.22220 4.32186 4.32603 4.46489 4.49867 4.52504 4.58122 4.71360 4.82423 4.96573 5.04436 5.15503 5.21686 5.31019 5.31809 5.40666 5.44057 5.65022 5.70037 5.76487 5.98957 6.09323 6.16618 6.33064 6.67070 6.84360 7.36818 8.91059 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.005157 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.800251 B = 5427.733675 C = 8056.340015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.436 3.564 4 O -0.540 6.540 5 C 0.101 3.899 6 H 0.126 0.874 7 C -0.052 4.052 8 C -0.080 4.080 9 C -0.084 4.084 10 C -0.159 4.159 11 C 0.068 3.932 12 F -0.155 7.155 13 C -0.170 4.170 14 C -0.067 4.067 15 N -0.652 5.652 16 C 0.084 3.916 17 C 0.037 3.963 18 C -0.544 4.544 19 H 0.058 0.942 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.345 0.655 36 H 0.011 0.989 37 H 0.067 0.933 38 H 0.000 1.000 39 H -0.014 1.014 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -21.279 -7.657 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.278 3.722 4 O -0.430 6.430 5 C -0.011 4.011 6 H 0.144 0.856 7 C -0.089 4.089 8 C -0.081 4.081 9 C -0.102 4.102 10 C -0.177 4.177 11 C 0.049 3.951 12 F -0.134 7.134 13 C -0.189 4.189 14 C -0.085 4.085 15 N -0.283 5.283 16 C -0.045 4.045 17 C -0.001 4.001 18 C -0.583 4.583 19 H 0.076 0.924 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.789 3.211 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.189 1.189 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.019 0.981 39 H 0.005 0.995 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.348 -20.971 -7.714 22.468 hybrid contribution -0.721 1.419 0.959 1.858 sum -3.069 -19.552 -6.756 20.913 Atomic orbital electron populations 1.23537 0.75385 1.05749 1.02087 1.86520 1.24544 1.32412 1.83365 1.25607 0.94034 0.81505 0.71041 1.90708 1.67722 1.37814 1.46709 1.21770 0.83595 0.92384 1.03375 0.85616 1.20526 0.90801 1.02311 0.95302 1.19733 0.95360 0.94424 0.98546 1.21238 0.93068 0.98635 0.97251 1.21329 0.95187 0.98755 1.02451 1.18043 0.76516 0.97816 1.02706 1.91445 1.30293 1.96801 1.94880 1.21289 0.96128 0.98547 1.02902 1.21026 0.92228 0.97793 0.97467 1.60977 1.54497 1.01195 1.11617 1.21841 0.97727 0.96576 0.88320 1.18842 0.94996 0.90839 0.95416 1.21587 1.45802 0.96947 0.93939 0.92363 1.25940 0.94715 0.97454 1.01476 1.70103 1.46784 1.07592 1.32543 0.85459 0.78871 0.77418 0.79370 1.19574 1.20697 1.18896 0.92990 0.92083 0.84485 0.89818 0.86317 0.81866 0.83115 0.85104 0.85015 0.83541 0.97090 0.91484 0.98135 0.99544 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.42 10.37 -51.38 -0.53 -7.95 16 3 C 0.44 11.72 7.09 71.24 0.50 12.22 16 4 O -0.54 -19.01 15.05 21.98 0.33 -18.68 16 5 C 0.10 2.50 2.49 44.17 0.11 2.61 16 6 H 0.13 2.87 7.80 -2.39 -0.02 2.85 16 7 C -0.05 -0.93 4.99 29.85 0.15 -0.78 16 8 C -0.08 -1.67 4.95 -19.86 -0.10 -1.77 16 9 C -0.08 -1.51 9.70 22.26 0.22 -1.29 16 10 C -0.16 -3.28 10.03 22.31 0.22 -3.05 16 11 C 0.07 1.77 7.30 22.38 0.16 1.93 16 12 F -0.16 -4.34 17.27 44.97 0.78 -3.56 16 13 C -0.17 -4.48 10.03 22.31 0.22 -4.26 16 14 C -0.07 -1.67 9.31 22.26 0.21 -1.46 16 15 N -0.65 -21.75 5.49 -495.44 -2.72 -24.47 16 16 C 0.08 3.54 5.32 86.30 0.46 4.00 16 17 C 0.04 1.97 5.23 29.85 0.16 2.13 16 18 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 22 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 27 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.12 1.45 7.94 -2.39 -0.02 1.43 16 31 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.34 12.28 7.75 -89.69 -0.69 11.59 16 36 H 0.01 0.48 7.62 -2.39 -0.02 0.46 16 37 H 0.07 2.72 8.05 -2.39 -0.02 2.70 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -72.12 350.09 4.72 -67.40 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.35 Total: 16.47 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.21 Total: -18.97 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.43 Total: -81.85 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.20 Total: -26.63 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.12 4.72 -67.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275689320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.508 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds