Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00114 * 2 1 4 4 O 1.20818 * 119.99915 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99885 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46813 * 60.00175 * 5 3 2 7 7 C 1.53000 * 109.47229 * 300.00283 * 5 3 2 8 8 C 1.50696 * 109.46963 * 174.99863 * 7 5 3 9 9 C 1.38248 * 119.97128 * 89.99994 * 8 7 5 10 10 C 1.38196 * 120.02484 * 179.97438 * 9 8 7 11 11 C 1.38458 * 119.97492 * 359.97438 * 10 9 8 12 12 F 1.35104 * 120.02786 * 179.97438 * 11 10 9 13 13 C 1.38465 * 119.94675 * 0.24873 * 11 10 9 14 14 C 1.38196 * 119.97501 * 359.51590 * 13 11 10 15 15 N 1.46896 * 109.47082 * 179.97438 * 5 3 2 16 16 C 1.46896 * 110.99964 * 275.00135 * 15 5 3 17 17 C 1.53000 * 109.47039 * 179.97438 * 16 15 5 18 18 C 1.50700 * 109.47134 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00422 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99920 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00353 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00156 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46981 * 60.00068 * 22 20 18 24 24 H 1.48500 * 109.47595 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47464 * 300.00127 * 22 20 18 26 26 H 1.09002 * 109.46994 * 60.00308 * 1 2 3 27 27 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47109 * 300.00086 * 1 2 3 29 29 H 1.09002 * 109.47296 * 54.99951 * 7 5 3 30 30 H 1.09001 * 109.47017 * 295.00457 * 7 5 3 31 31 H 1.08001 * 119.98900 * 359.97438 * 9 8 7 32 32 H 1.07996 * 120.01603 * 179.97438 * 10 9 8 33 33 H 1.08007 * 120.01049 * 179.72700 * 13 11 10 34 34 H 1.07993 * 119.98770 * 180.23077 * 14 13 11 35 35 H 1.00903 * 110.99792 * 38.95440 * 15 5 3 36 36 H 1.08997 * 109.47628 * 300.00076 * 16 15 5 37 37 H 1.09008 * 109.47416 * 60.00306 * 16 15 5 38 38 H 1.08994 * 109.47568 * 300.00214 * 17 16 15 39 39 H 1.09004 * 109.46758 * 60.00513 * 17 16 15 40 40 H 0.97001 * 120.00366 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1130 0.5814 1.2501 8 6 5.6184 0.5520 1.1903 9 6 6.3515 1.5929 1.7291 10 6 7.7322 1.5667 1.6753 11 6 8.3813 0.4973 1.0820 12 9 9.7310 0.4709 1.0284 13 6 7.6458 -0.5425 0.5386 14 6 6.2654 -0.5165 0.5979 15 7 3.9830 2.6835 -0.0002 16 6 4.0182 3.2213 -1.3667 17 6 4.4546 4.6872 -1.3267 18 6 4.4902 5.2391 -2.7285 19 1 4.2273 4.6078 -3.5644 20 6 4.8583 6.5503 -2.9441 21 7 5.1779 7.3194 -1.9263 22 14 4.9030 7.2343 -4.6817 23 1 3.5503 7.1374 -5.2868 24 1 5.3265 8.6571 -4.6430 25 1 5.8671 6.4524 -5.4969 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.7312 -0.4385 1.2961 30 1 3.7951 1.1286 2.1377 31 1 5.8451 2.4268 2.1923 32 1 8.3047 2.3802 2.0959 33 1 8.1510 -1.3751 0.0716 34 1 5.6917 -1.3291 0.1774 35 1 3.3827 3.2383 0.5915 36 1 4.7257 2.6474 -1.9650 37 1 3.0252 3.1503 -1.8109 38 1 3.7468 5.2609 -0.7286 39 1 5.4475 4.7586 -0.8825 40 1 5.4366 8.2419 -2.0779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275689330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = -117.524200 kcal Electronic energy + Delta-G solvation = -23371.942886 eV Core-core repulsion = 19679.774337 eV Total energy + Delta-G solvation = -3692.168549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.78066 -40.65846 -39.08759 -37.02235 -35.72643 -33.59530 -32.16905 -31.02484 -29.90054 -28.21332 -27.09088 -24.49981 -23.61014 -22.91980 -21.39128 -20.69991 -20.33273 -17.77444 -17.56388 -17.03470 -16.50881 -16.26353 -16.18303 -15.47474 -15.37612 -14.66897 -14.43794 -14.32600 -13.94757 -13.78195 -13.45137 -13.31555 -13.19587 -12.89805 -12.40391 -12.26936 -12.11742 -11.64412 -11.62938 -11.39230 -11.14287 -10.92885 -10.87610 -10.84151 -10.55959 -10.52363 -10.04974 -9.41824 -9.17141 -8.98523 -8.44861 -8.35227 -8.12140 -5.98387 -4.00726 1.21413 1.36340 2.20377 2.70681 3.34774 3.38920 3.41303 3.68382 4.32090 4.37059 4.50710 4.67174 4.80015 4.92540 5.00014 5.00243 5.06477 5.13464 5.16481 5.36061 5.37880 5.39330 5.43535 5.69083 5.78327 6.02849 6.11743 6.21094 6.23472 6.30427 6.36669 6.38943 6.64853 6.93507 6.99796 7.21679 7.62836 7.71110 7.78028 7.88660 8.05580 8.43142 9.05459 9.62728 11.13041 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.005155 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.362729 B = 5429.856410 C = 8058.293130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.429 3.571 4 O -0.499 6.499 5 C 0.100 3.900 6 H 0.115 0.885 7 C -0.062 4.062 8 C -0.078 4.078 9 C -0.053 4.053 10 C -0.152 4.152 11 C 0.091 3.909 12 F -0.146 7.146 13 C -0.159 4.159 14 C -0.091 4.091 15 N -0.654 5.654 16 C 0.062 3.938 17 C 0.029 3.971 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.350 0.650 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.015 0.985 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -18.845 8.680 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.278 6.278 3 C 0.269 3.731 4 O -0.385 6.385 5 C -0.013 4.013 6 H 0.132 0.868 7 C -0.100 4.100 8 C -0.078 4.078 9 C -0.071 4.071 10 C -0.171 4.171 11 C 0.072 3.928 12 F -0.124 7.124 13 C -0.177 4.177 14 C -0.109 4.109 15 N -0.285 5.285 16 C -0.066 4.066 17 C -0.008 4.008 18 C -0.560 4.560 19 H 0.071 0.929 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.549 -18.488 8.732 20.505 hybrid contribution -0.924 0.729 -1.341 1.785 sum -2.473 -17.759 7.390 19.393 Atomic orbital electron populations 1.23229 0.77067 1.03318 1.02514 1.86547 1.23024 1.34125 1.84131 1.25617 0.93839 0.81458 0.72142 1.90709 1.66846 1.36332 1.44592 1.21661 0.83755 0.94653 1.01226 0.86773 1.20522 0.91691 1.00922 0.96853 1.19573 0.94859 0.94509 0.98843 1.20928 0.92268 0.97173 0.96694 1.21177 0.95645 0.98041 1.02254 1.17751 0.76676 0.96863 1.01546 1.91477 1.29551 1.96686 1.94718 1.21014 0.94651 0.98992 1.03092 1.20858 0.93277 0.98303 0.98506 1.61082 1.53853 0.99266 1.14334 1.22296 0.98653 0.99732 0.85929 1.19019 0.97193 0.87601 0.97026 1.21100 1.45873 0.96302 0.92749 0.92896 1.24977 0.95319 0.97056 0.96874 1.69956 1.45934 1.07194 1.30111 0.86658 0.78416 0.77958 0.84953 1.20322 1.21245 1.20219 0.92033 0.88374 0.92054 0.89559 0.90183 0.84599 0.84908 0.85228 0.85302 0.82974 0.92136 0.95930 0.96630 0.95583 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.33 10.37 -39.26 -0.41 -4.74 16 3 C 0.43 6.13 7.09 36.01 0.26 6.38 16 4 O -0.50 -8.85 15.06 -18.74 -0.28 -9.13 16 5 C 0.10 1.33 2.49 -68.86 -0.17 1.16 16 6 H 0.11 1.47 7.80 -51.93 -0.40 1.07 16 7 C -0.06 -0.64 4.99 -27.88 -0.14 -0.78 16 8 C -0.08 -0.89 4.95 -104.62 -0.52 -1.41 16 9 C -0.05 -0.66 9.30 -39.59 -0.37 -1.03 16 10 C -0.15 -1.97 10.03 -39.52 -0.40 -2.37 16 11 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 12 F -0.15 -2.02 17.27 2.25 0.04 -1.98 16 13 C -0.16 -1.81 10.03 -39.51 -0.40 -2.20 16 14 C -0.09 -0.96 9.70 -39.59 -0.38 -1.35 16 15 N -0.65 -10.92 5.48 -107.95 -0.59 -11.52 16 16 C 0.06 1.29 5.32 -3.83 -0.02 1.27 16 17 C 0.03 0.76 5.23 -27.88 -0.15 0.61 16 18 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 22 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 30 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.35 6.09 7.75 -39.29 -0.30 5.79 16 36 H 0.06 1.24 8.05 -51.93 -0.42 0.83 16 37 H 0.02 0.49 7.62 -51.92 -0.40 0.10 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -32.56 350.10 -7.87 -40.43 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.70 Total: 2.14 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.92 Total: -11.08 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.14 Total: -37.87 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.69 Total: -13.87 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.56 -7.87 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275689330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.094 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds