Wall clock time and date at job start Tue Mar 31 2020 07:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00114 * 2 1 4 4 O 1.20818 * 119.99915 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99885 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.46813 * 60.00175 * 5 3 2 7 7 C 1.53000 * 109.47229 * 300.00283 * 5 3 2 8 8 C 1.50696 * 109.46963 * 174.99863 * 7 5 3 9 9 C 1.38248 * 119.97128 * 89.99994 * 8 7 5 10 10 C 1.38196 * 120.02484 * 179.97438 * 9 8 7 11 11 C 1.38458 * 119.97492 * 359.97438 * 10 9 8 12 12 F 1.35104 * 120.02786 * 179.97438 * 11 10 9 13 13 C 1.38465 * 119.94675 * 0.24873 * 11 10 9 14 14 C 1.38196 * 119.97501 * 359.51590 * 13 11 10 15 15 N 1.46896 * 109.47082 * 179.97438 * 5 3 2 16 16 C 1.46896 * 110.99964 * 275.00135 * 15 5 3 17 17 C 1.53000 * 109.47039 * 179.97438 * 16 15 5 18 18 C 1.50700 * 109.47134 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00422 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99920 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00353 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00156 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46981 * 60.00068 * 22 20 18 24 24 H 1.48500 * 109.47595 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47464 * 300.00127 * 22 20 18 26 26 H 1.09002 * 109.46994 * 60.00308 * 1 2 3 27 27 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47109 * 300.00086 * 1 2 3 29 29 H 1.09002 * 109.47296 * 54.99951 * 7 5 3 30 30 H 1.09001 * 109.47017 * 295.00457 * 7 5 3 31 31 H 1.08001 * 119.98900 * 359.97438 * 9 8 7 32 32 H 1.07996 * 120.01603 * 179.97438 * 10 9 8 33 33 H 1.08007 * 120.01049 * 179.72700 * 13 11 10 34 34 H 1.07993 * 119.98770 * 180.23077 * 14 13 11 35 35 H 1.00903 * 110.99792 * 38.95440 * 15 5 3 36 36 H 1.08997 * 109.47628 * 300.00076 * 16 15 5 37 37 H 1.09008 * 109.47416 * 60.00306 * 16 15 5 38 38 H 1.08994 * 109.47568 * 300.00214 * 17 16 15 39 39 H 1.09004 * 109.46758 * 60.00513 * 17 16 15 40 40 H 0.97001 * 120.00366 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1130 0.5814 1.2501 8 6 5.6184 0.5520 1.1903 9 6 6.3515 1.5929 1.7291 10 6 7.7322 1.5667 1.6753 11 6 8.3813 0.4973 1.0820 12 9 9.7310 0.4709 1.0284 13 6 7.6458 -0.5425 0.5386 14 6 6.2654 -0.5165 0.5979 15 7 3.9830 2.6835 -0.0002 16 6 4.0182 3.2213 -1.3667 17 6 4.4546 4.6872 -1.3267 18 6 4.4902 5.2391 -2.7285 19 1 4.2273 4.6078 -3.5644 20 6 4.8583 6.5503 -2.9441 21 7 5.1779 7.3194 -1.9263 22 14 4.9030 7.2343 -4.6817 23 1 3.5503 7.1374 -5.2868 24 1 5.3265 8.6571 -4.6430 25 1 5.8671 6.4524 -5.4969 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.7312 -0.4385 1.2961 30 1 3.7951 1.1286 2.1377 31 1 5.8451 2.4268 2.1923 32 1 8.3047 2.3802 2.0959 33 1 8.1510 -1.3751 0.0716 34 1 5.6917 -1.3291 0.1774 35 1 3.3827 3.2383 0.5915 36 1 4.7257 2.6474 -1.9650 37 1 3.0252 3.1503 -1.8109 38 1 3.7468 5.2609 -0.7286 39 1 5.4475 4.7586 -0.8825 40 1 5.4366 8.2419 -2.0779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275689330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:19 Heat of formation + Delta-G solvation = -136.828202 kcal Electronic energy + Delta-G solvation = -23372.779971 eV Core-core repulsion = 19679.774337 eV Total energy + Delta-G solvation = -3693.005633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.80425 -41.76680 -40.00842 -38.17161 -37.01687 -35.39899 -33.74033 -31.92565 -31.33854 -29.51281 -28.13770 -26.08215 -24.96169 -23.85245 -22.63885 -22.23084 -21.45636 -18.89908 -18.57513 -18.51466 -18.05358 -17.46675 -17.20283 -16.57241 -16.49139 -16.26739 -15.87643 -15.61321 -15.08384 -14.86317 -14.50051 -14.43632 -14.29756 -14.21226 -14.04988 -13.45958 -13.15271 -13.06561 -12.87551 -12.75329 -12.55481 -12.39831 -12.38107 -12.11107 -11.81335 -11.74858 -11.58743 -11.42452 -11.27759 -10.56772 -9.90075 -9.60013 -9.36221 -8.20758 -6.31917 0.26807 0.46041 1.09309 1.38756 1.42026 1.49798 1.72375 2.39420 2.75634 3.11157 3.12934 3.43309 3.68358 3.90839 3.99756 4.07583 4.10857 4.22238 4.32096 4.32672 4.46474 4.49895 4.52512 4.58090 4.71360 4.82379 4.96546 5.04458 5.15500 5.21671 5.31021 5.31817 5.40592 5.44053 5.65071 5.70064 5.76487 5.98969 6.09319 6.16658 6.33113 6.67069 6.84343 7.36916 8.91134 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.005155 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.362729 B = 5429.856410 C = 8058.293130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.354 6.354 3 C 0.436 3.564 4 O -0.540 6.540 5 C 0.102 3.898 6 H 0.126 0.874 7 C -0.052 4.052 8 C -0.080 4.080 9 C -0.067 4.067 10 C -0.170 4.170 11 C 0.068 3.932 12 F -0.155 7.155 13 C -0.159 4.159 14 C -0.084 4.084 15 N -0.652 5.652 16 C 0.084 3.916 17 C 0.037 3.963 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.265 1.265 26 H 0.051 0.949 27 H 0.137 0.863 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.345 0.655 36 H 0.067 0.933 37 H 0.011 0.989 38 H -0.014 1.014 39 H 0.000 1.000 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 -21.267 7.648 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.278 3.722 4 O -0.429 6.429 5 C -0.011 4.011 6 H 0.144 0.856 7 C -0.089 4.089 8 C -0.081 4.081 9 C -0.085 4.085 10 C -0.189 4.189 11 C 0.049 3.951 12 F -0.134 7.134 13 C -0.177 4.177 14 C -0.102 4.102 15 N -0.283 5.283 16 C -0.045 4.045 17 C -0.001 4.001 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.788 3.212 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.190 1.190 26 H 0.070 0.930 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.085 0.915 37 H 0.029 0.971 38 H 0.004 0.996 39 H 0.019 0.981 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.341 -20.956 7.709 22.452 hybrid contribution -0.734 1.411 -0.963 1.859 sum -3.075 -19.545 6.746 20.904 Atomic orbital electron populations 1.23538 0.75386 1.05749 1.02086 1.86522 1.24542 1.32411 1.83368 1.25608 0.94033 0.81504 0.71040 1.90707 1.67721 1.37813 1.46708 1.21769 0.83598 0.92385 1.03369 0.85618 1.20524 0.90806 1.02316 0.95294 1.19733 0.95360 0.94401 0.98561 1.21027 0.92233 0.97815 0.97446 1.21287 0.96122 0.98450 1.02995 1.18041 0.76504 0.97822 1.02721 1.91447 1.30271 1.96796 1.94906 1.21331 0.95193 0.98858 1.02335 1.21234 0.93067 0.98621 0.97276 1.60976 1.54476 1.01196 1.11644 1.21840 0.97728 0.96578 0.88313 1.18839 0.94987 0.90833 0.95406 1.21561 1.45909 0.96978 0.93947 0.92350 1.25939 0.94690 0.97446 1.01486 1.70095 1.46696 1.07590 1.32616 0.85519 0.78924 0.77304 0.79405 1.19382 1.20707 1.19001 0.92996 0.84487 0.92076 0.86317 0.89820 0.85018 0.85103 0.83116 0.81867 0.83540 0.91485 0.97084 0.99566 0.98138 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.42 10.37 -51.43 -0.53 -7.95 16 3 C 0.44 11.72 7.09 71.24 0.50 12.22 16 4 O -0.54 -19.01 15.06 21.99 0.33 -18.68 16 5 C 0.10 2.50 2.49 44.17 0.11 2.61 16 6 H 0.13 2.87 7.80 -2.38 -0.02 2.85 16 7 C -0.05 -0.93 4.99 29.85 0.15 -0.78 16 8 C -0.08 -1.67 4.95 -19.86 -0.10 -1.77 16 9 C -0.07 -1.67 9.30 22.26 0.21 -1.46 16 10 C -0.17 -4.48 10.03 22.31 0.22 -4.26 16 11 C 0.07 1.76 7.30 22.38 0.16 1.93 16 12 F -0.16 -4.34 17.27 44.97 0.78 -3.56 16 13 C -0.16 -3.28 10.03 22.31 0.22 -3.05 16 14 C -0.08 -1.51 9.70 22.26 0.22 -1.29 16 15 N -0.65 -21.76 5.48 -495.45 -2.72 -24.48 16 16 C 0.08 3.54 5.32 86.30 0.46 4.00 16 17 C 0.04 1.99 5.23 29.85 0.16 2.15 16 18 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 20 C 0.00 0.15 5.46 84.65 0.46 0.61 16 21 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 22 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 27 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 29 H 0.12 1.45 7.94 -2.39 -0.02 1.43 16 30 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.34 12.29 7.75 -89.69 -0.69 11.59 16 36 H 0.07 2.72 8.05 -2.39 -0.02 2.70 16 37 H 0.01 0.48 7.62 -2.38 -0.02 0.46 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -72.07 350.10 4.72 -67.35 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.35 Total: 16.59 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.21 Total: -19.01 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.43 Total: -81.85 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.20 Total: -26.63 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.07 4.72 -67.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275689330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.477 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds