Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46978 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47243 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99671 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00246 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00070 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99867 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46924 * 89.99820 * 19 17 15 21 21 H 1.48493 * 109.47431 * 209.99799 * 19 17 15 22 22 H 1.48500 * 109.47393 * 330.00109 * 19 17 15 23 23 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 24 24 F 1.35100 * 120.04992 * 180.28191 * 23 7 6 25 25 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 27 27 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 28 28 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 32 32 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 33 33 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 34 34 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 35 35 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.47222 * 299.99832 * 13 12 10 37 37 H 1.09002 * 109.47197 * 60.00305 * 13 12 10 38 38 H 1.09003 * 109.47538 * 300.00193 * 14 13 12 39 39 H 1.09000 * 109.47441 * 59.99756 * 14 13 12 40 40 H 0.97001 * 119.99450 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 9.7249 2.6008 -2.5994 14 6 10.2411 2.5027 -4.0363 15 6 11.7458 2.5847 -4.0363 16 1 12.2805 2.6954 -3.1045 17 6 12.4400 2.5175 -5.2257 18 7 13.7532 2.5887 -5.2255 19 14 11.5153 2.3240 -6.8371 20 1 11.1937 3.6653 -7.3874 21 1 12.3598 1.5808 -7.8064 22 1 10.2570 1.5722 -6.5987 23 6 3.4333 1.2856 0.0005 24 9 4.1713 0.1540 0.0068 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2136 2.3200 -0.0005 29 1 1.3340 4.5115 -0.0011 30 1 3.7914 4.6406 -0.0014 31 1 5.8742 3.5527 0.4339 32 1 5.9715 1.7822 0.5899 33 1 5.7671 1.5542 -1.8708 34 1 5.6698 3.3246 -2.0267 35 1 7.7818 2.4218 -3.4364 36 1 10.0373 3.5503 -2.1648 37 1 10.1331 1.7796 -2.0102 38 1 9.9286 1.5530 -4.4706 39 1 9.8328 3.3235 -4.6260 40 1 14.2415 2.5417 -6.0624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285944044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -111.899787 kcal Electronic energy + Delta-G solvation = -22465.769205 eV Core-core repulsion = 18773.844549 eV Total energy + Delta-G solvation = -3691.924656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.96540 -40.40371 -39.38653 -38.04902 -35.06278 -33.91112 -32.77966 -30.70693 -30.50570 -29.45712 -27.74954 -25.63663 -23.97412 -22.91425 -21.48951 -20.76747 -19.94439 -18.43591 -17.41743 -17.27602 -16.92198 -16.72082 -16.42970 -15.51593 -15.38725 -15.12013 -15.06140 -14.85592 -14.24271 -14.12199 -13.95384 -13.37695 -13.12796 -12.90729 -12.69942 -12.59500 -12.40613 -12.24235 -11.91893 -11.48088 -11.45133 -11.36501 -11.21493 -11.08710 -10.38266 -10.25954 -9.95694 -9.53370 -9.30480 -9.03403 -8.63314 -8.56986 -8.50839 -6.10271 -4.10303 0.73949 0.89438 2.71644 2.96064 3.16358 3.25796 3.33596 3.35004 3.63146 3.92632 4.30410 4.38453 4.41215 4.61995 4.68200 4.76114 4.82854 4.84740 4.92498 5.02515 5.13615 5.22612 5.27339 5.49853 5.56196 5.65106 5.76627 5.93481 6.00234 6.10946 6.14137 6.22470 6.28508 6.57538 6.77986 6.88404 7.15105 7.24488 7.67708 7.92397 8.44454 8.59397 8.94229 9.49857 11.02775 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.002447 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.700872 B =11438.567986 C =11723.283608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.095 3.905 4 C -0.189 4.189 5 C -0.088 4.088 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.065 4.065 9 C -0.136 4.136 10 C 0.507 3.493 11 O -0.548 6.548 12 N -0.727 5.727 13 C 0.129 3.871 14 C -0.022 4.022 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.071 3.929 24 F -0.128 7.128 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.403 -0.070 9.082 32.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.049 3.951 4 C -0.208 4.208 5 C -0.106 4.106 6 C -0.143 4.143 7 C -0.075 4.075 8 C -0.103 4.103 9 C -0.176 4.176 10 C 0.292 3.708 11 O -0.426 6.426 12 N -0.377 5.377 13 C 0.007 3.993 14 C -0.060 4.060 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C 0.052 3.948 24 F -0.106 7.106 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.665 -0.234 9.713 32.168 hybrid contribution -0.770 -0.239 -1.421 1.634 sum -31.436 -0.473 8.293 32.515 Atomic orbital electron populations 1.23114 0.77926 1.04324 1.01445 1.86152 1.21709 1.25820 1.88688 1.19010 0.90765 0.85677 0.99664 1.21123 1.00210 0.91572 1.07888 1.21000 0.94553 0.97187 0.97863 1.20945 0.93468 0.97819 1.02064 1.19896 0.97057 0.90898 0.99694 1.20300 0.88076 1.05344 0.96574 1.21635 0.93063 1.04573 0.98346 1.20501 0.89537 0.76642 0.84089 1.90690 1.70744 1.49714 1.31439 1.46342 1.09348 1.73574 1.08463 1.21505 0.76196 1.01515 1.00086 1.19797 0.97950 0.96842 0.91418 1.20927 0.88849 1.50999 0.95327 0.90626 1.25011 0.94778 0.94430 0.99139 1.69907 1.06262 1.50297 1.27210 0.86742 0.80171 0.78556 0.83543 1.20245 1.21278 1.19070 1.16850 0.85804 0.82865 1.09325 1.91514 1.76329 1.48682 1.94099 0.87923 0.92460 0.92416 0.84643 0.84983 0.84568 0.89156 0.89465 0.88934 0.88763 0.77055 0.91977 0.91971 0.96003 0.96453 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.09 10.36 -19.61 -0.20 -3.30 16 3 C 0.09 0.96 6.69 -39.18 -0.26 0.70 16 4 C -0.19 -1.40 9.04 -39.45 -0.36 -1.76 16 5 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 6 C -0.12 -1.00 9.68 -39.57 -0.38 -1.39 16 7 C -0.07 -0.76 5.14 -104.58 -0.54 -1.30 16 8 C -0.07 -0.74 4.41 -27.89 -0.12 -0.87 16 9 C -0.14 -1.56 5.68 -27.88 -0.16 -1.72 16 10 C 0.51 8.15 7.83 -10.98 -0.09 8.06 16 11 O -0.55 -10.94 15.98 5.56 0.09 -10.85 16 12 N -0.73 -12.00 5.56 -60.29 -0.33 -12.33 16 13 C 0.13 2.67 5.61 -4.04 -0.02 2.65 16 14 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 15 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 19 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 C 0.07 0.83 7.25 -39.29 -0.28 0.54 16 24 F -0.13 -1.73 16.41 2.25 0.04 -1.70 16 25 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 27 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 28 H 0.14 0.65 6.30 -52.48 -0.33 0.32 16 29 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 30 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.09 1.00 8.01 -51.93 -0.42 0.58 16 32 H 0.09 1.14 7.74 -51.92 -0.40 0.74 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.40 5.40 8.47 -40.82 -0.35 5.06 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -34.42 344.69 -6.88 -41.30 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.60 Total: 0.72 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.17 Total: -8.80 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.44 Total: -39.05 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.11 Total: -14.15 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.42 -6.88 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285944044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.602 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds