Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46978 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47243 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99671 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00246 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00070 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99867 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46924 * 89.99820 * 19 17 15 21 21 H 1.48493 * 109.47431 * 209.99799 * 19 17 15 22 22 H 1.48500 * 109.47393 * 330.00109 * 19 17 15 23 23 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 24 24 F 1.35100 * 120.04992 * 180.28191 * 23 7 6 25 25 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 27 27 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 28 28 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 32 32 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 33 33 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 34 34 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 35 35 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.47222 * 299.99832 * 13 12 10 37 37 H 1.09002 * 109.47197 * 60.00305 * 13 12 10 38 38 H 1.09003 * 109.47538 * 300.00193 * 14 13 12 39 39 H 1.09000 * 109.47441 * 59.99756 * 14 13 12 40 40 H 0.97001 * 119.99450 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 9.7249 2.6008 -2.5994 14 6 10.2411 2.5027 -4.0363 15 6 11.7458 2.5847 -4.0363 16 1 12.2805 2.6954 -3.1045 17 6 12.4400 2.5175 -5.2257 18 7 13.7532 2.5887 -5.2255 19 14 11.5153 2.3240 -6.8371 20 1 11.1937 3.6653 -7.3874 21 1 12.3598 1.5808 -7.8064 22 1 10.2570 1.5722 -6.5987 23 6 3.4333 1.2856 0.0005 24 9 4.1713 0.1540 0.0068 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2136 2.3200 -0.0005 29 1 1.3340 4.5115 -0.0011 30 1 3.7914 4.6406 -0.0014 31 1 5.8742 3.5527 0.4339 32 1 5.9715 1.7822 0.5899 33 1 5.7671 1.5542 -1.8708 34 1 5.6698 3.3246 -2.0267 35 1 7.7818 2.4218 -3.4364 36 1 10.0373 3.5503 -2.1648 37 1 10.1331 1.7796 -2.0102 38 1 9.9286 1.5530 -4.4706 39 1 9.8328 3.3235 -4.6260 40 1 14.2415 2.5417 -6.0624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285944044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = -135.528859 kcal Electronic energy + Delta-G solvation = -22466.793838 eV Core-core repulsion = 18773.844549 eV Total energy + Delta-G solvation = -3692.949290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.83392 -41.06831 -40.66673 -38.72696 -36.68901 -34.82463 -34.76510 -32.20226 -31.24756 -30.49385 -28.22350 -27.14471 -25.25950 -23.54308 -22.68829 -22.19455 -21.24908 -19.13364 -18.97643 -18.15578 -18.08096 -17.78553 -17.15723 -16.75509 -16.64216 -16.23355 -16.02865 -15.73643 -15.53987 -15.35758 -15.10234 -14.65331 -14.37105 -14.16810 -13.73907 -13.61595 -13.35304 -13.06258 -13.00031 -12.92303 -12.49126 -12.19809 -12.16529 -12.06861 -11.96927 -11.94129 -11.76640 -11.52483 -10.88325 -10.79245 -10.04183 -9.75198 -9.21509 -8.30543 -6.37954 0.09029 0.26641 1.38735 1.41852 1.53089 1.66367 2.17454 2.29280 2.36627 2.59609 3.04361 3.27300 3.55012 3.85216 3.88958 4.03786 4.05482 4.25052 4.27292 4.38610 4.39010 4.39849 4.41977 4.50010 4.62667 4.72674 4.74571 4.87621 5.00491 5.08362 5.13963 5.18143 5.33410 5.39924 5.43601 5.45614 5.64640 5.69245 6.21733 6.31527 6.61650 6.70866 7.26388 7.30457 8.86280 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.002447 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.700872 B =11438.567986 C =11723.283608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.082 3.918 4 C -0.183 4.183 5 C -0.077 4.077 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.062 4.062 9 C -0.122 4.122 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.718 5.718 13 C 0.143 3.857 14 C -0.013 4.013 15 C -0.540 4.540 16 H 0.027 0.973 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.961 3.039 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.238 1.238 23 C 0.033 3.967 24 F -0.151 7.151 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.729 1.016 7.411 36.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.036 3.964 4 C -0.201 4.201 5 C -0.095 4.095 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.099 4.099 9 C -0.161 4.161 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.370 5.370 13 C 0.019 3.981 14 C -0.050 4.050 15 C -0.579 4.579 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.591 5.591 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.161 1.161 23 C 0.014 3.986 24 F -0.130 7.130 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.185 0.815 30 H 0.174 0.826 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.251 0.749 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -35.043 0.849 8.043 35.965 hybrid contribution 0.557 -0.557 -0.773 1.104 sum -34.487 0.292 7.269 35.246 Atomic orbital electron populations 1.23421 0.75650 1.05750 1.02850 1.86113 1.24196 1.26335 1.88791 1.19222 0.90456 0.86710 0.99990 1.21507 1.01581 0.90772 1.06245 1.21434 0.94229 0.98245 0.95583 1.21235 0.94196 0.97675 1.01212 1.19791 0.96091 0.91355 1.00976 1.20188 0.89354 1.04260 0.96130 1.21615 0.88921 1.06450 0.99124 1.21332 0.91399 0.74983 0.82969 1.90676 1.72065 1.51499 1.33020 1.46109 1.07439 1.73598 1.09814 1.21018 0.78918 0.99781 0.98367 1.19653 0.94377 0.98049 0.92970 1.21268 0.91831 1.50984 0.93791 0.95413 1.26114 0.95697 0.93776 1.03888 1.70080 1.08552 1.51801 1.28621 0.85510 0.79454 0.79410 0.77325 1.18785 1.21290 1.16068 1.17282 0.86795 0.82667 1.11888 1.91440 1.77010 1.49961 1.94589 0.86722 0.90995 0.90900 0.81752 0.81471 0.82586 0.89027 0.92220 0.87886 0.85321 0.74882 0.93682 0.94207 0.94640 0.94415 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.52 10.36 -93.08 -0.96 -7.49 16 3 C 0.08 1.56 6.69 22.53 0.15 1.71 16 4 C -0.18 -2.11 9.04 22.35 0.20 -1.91 16 5 C -0.08 -0.73 10.04 22.26 0.22 -0.51 16 6 C -0.13 -1.63 9.68 22.28 0.22 -1.42 16 7 C -0.08 -1.57 5.14 -19.84 -0.10 -1.67 16 8 C -0.06 -1.38 4.41 29.85 0.13 -1.25 16 9 C -0.12 -2.59 5.68 29.85 0.17 -2.42 16 10 C 0.51 15.94 7.83 87.66 0.69 16.62 16 11 O -0.59 -24.20 15.98 -3.03 -0.05 -24.25 16 12 N -0.72 -22.74 5.56 -463.05 -2.57 -25.32 16 13 C 0.14 5.97 5.61 86.38 0.48 6.46 16 14 C -0.01 -0.57 4.16 29.85 0.12 -0.45 16 15 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 16 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 17 C 0.00 0.13 5.47 84.66 0.46 0.60 16 18 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 19 Si 0.96 42.63 27.47 68.60 1.88 44.52 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 23 C 0.03 0.77 7.25 22.46 0.16 0.93 16 24 F -0.15 -4.31 16.41 44.97 0.74 -3.58 16 25 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 27 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 28 H 0.17 0.85 6.30 -2.91 -0.02 0.83 16 29 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 32 H 0.06 1.65 7.74 -2.38 -0.02 1.63 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 10.10 8.47 -92.71 -0.79 9.31 16 36 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.51 7.20 -2.39 -0.02 1.50 16 39 H 0.04 1.56 7.57 -2.39 -0.02 1.55 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -79.48 344.69 3.82 -75.66 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.21 Total: 13.05 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.27 Total: -13.09 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.27 Total: -84.82 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.01 Total: -31.73 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.74 Total: -3.58 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Total: -79.48 3.82 -75.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285944044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.872 kcal (2) G-P(sol) polarization free energy of solvation -79.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds