Wall clock time and date at job start Tue Mar 31 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81405 * 103.00209 * 2 1 4 4 C 1.52997 * 112.84668 * 299.51016 * 3 2 1 5 5 N 1.46901 * 109.47264 * 310.20643 * 4 3 2 6 6 C 1.46901 * 110.99763 * 158.50633 * 5 4 3 7 7 C 1.50706 * 109.46858 * 200.85997 * 6 5 4 8 8 H 1.07999 * 120.00114 * 5.02741 * 7 6 5 9 9 C 1.37875 * 119.99957 * 185.02759 * 7 6 5 10 10 N 1.31520 * 119.99838 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99982 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47332 * 89.99748 * 11 9 7 13 13 H 1.48507 * 109.46664 * 209.99898 * 11 9 7 14 14 H 1.48503 * 109.46845 * 329.99248 * 11 9 7 15 15 C 1.46900 * 110.99746 * 282.45595 * 5 4 3 16 16 C 1.50696 * 109.47278 * 297.16960 * 15 5 4 17 17 C 1.34515 * 125.78910 * 94.28301 * 16 15 5 18 18 C 1.41377 * 106.84024 * 180.02562 * 17 16 15 19 19 C 1.34514 * 106.84259 * 0.02562 * 18 17 16 20 20 O 1.34297 * 108.42070 * 0.02562 * 19 18 17 21 21 C 1.53780 * 113.68898 * 70.77649 * 3 2 1 22 22 C 1.53777 * 87.07963 * 139.99226 * 21 3 2 23 23 C 1.53774 * 113.61196 * 168.31384 * 3 2 1 24 24 H 1.08997 * 109.46948 * 305.15804 * 1 2 3 25 25 H 1.08999 * 109.46704 * 65.15307 * 1 2 3 26 26 H 1.08991 * 109.47390 * 185.15550 * 1 2 3 27 27 H 1.09000 * 109.47062 * 190.20552 * 4 3 2 28 28 H 1.09004 * 109.47465 * 70.20996 * 4 3 2 29 29 H 1.08999 * 109.46889 * 320.85440 * 6 5 4 30 30 H 1.08992 * 109.47276 * 80.85926 * 6 5 4 31 31 H 0.96996 * 119.99750 * 180.02562 * 10 9 7 32 32 H 1.09007 * 109.46446 * 177.17265 * 15 5 4 33 33 H 1.09000 * 109.47127 * 57.17655 * 15 5 4 34 34 H 1.08004 * 126.57662 * 359.97438 * 17 16 15 35 35 H 1.08000 * 126.57710 * 180.02562 * 18 17 16 36 36 H 1.08005 * 125.78544 * 180.25923 * 19 18 17 37 37 H 1.08998 * 113.61531 * 254.53942 * 21 3 2 38 38 H 1.09004 * 113.61580 * 25.44953 * 21 3 2 39 39 H 1.08997 * 113.62043 * 220.01637 * 22 21 3 40 40 H 1.09003 * 113.69252 * 89.12660 * 22 21 3 41 41 H 1.08997 * 113.61927 * 334.48016 * 23 3 2 42 42 H 1.08999 * 113.61481 * 105.39113 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 1.6791 2.5026 -1.2270 5 7 2.0502 1.7664 -2.4429 6 6 1.1627 2.1145 -3.5605 7 6 1.2135 1.0248 -4.6004 8 1 1.7779 0.1237 -4.4112 9 6 0.5395 1.1784 -5.7933 10 7 0.5843 0.2277 -6.7010 11 14 -0.4360 2.7374 -6.1209 12 1 0.4413 3.7425 -6.7732 13 1 -1.5812 2.4262 -7.0137 14 1 -0.9437 3.2827 -4.8363 15 6 3.4567 2.0046 -2.7937 16 6 3.6568 3.4658 -3.1031 17 6 4.0691 4.4049 -2.2327 18 6 4.1166 5.6274 -2.9412 19 6 3.7299 5.3624 -4.2020 20 8 3.4519 4.0518 -4.2941 21 6 1.9094 2.4739 1.3297 22 6 3.2277 3.2427 1.1408 23 6 3.7052 2.0572 0.2854 24 1 -0.3633 0.5917 0.8402 25 1 -0.3633 0.4318 -0.9326 26 1 -0.3634 -1.0234 0.0923 27 1 2.1027 3.5061 -1.2663 28 1 0.5932 2.5691 -1.1597 29 1 0.1415 2.2197 -3.1942 30 1 1.4885 3.0553 -4.0039 31 1 0.1105 0.3360 -7.5404 32 1 3.7188 1.4088 -3.6682 33 1 4.0934 1.7199 -1.9560 34 1 4.3156 4.2540 -1.1920 35 1 4.4075 6.5894 -2.5459 36 1 3.6592 6.0811 -5.0051 37 1 1.0242 3.1085 1.2893 38 1 1.9134 1.8054 2.1907 39 1 3.7940 3.3718 2.0631 40 1 3.1172 4.1701 0.5788 41 1 4.2001 1.2750 0.8609 42 1 4.2696 2.3557 -0.5980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290466180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:26 Heat of formation + Delta-G solvation = 56.956143 kcal Electronic energy + Delta-G solvation = -23070.119081 eV Core-core repulsion = 19951.729744 eV Total energy + Delta-G solvation = -3118.389337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.25779 -39.40375 -36.27618 -32.76026 -32.35085 -30.24834 -28.92419 -28.29054 -26.69821 -25.63152 -24.89949 -22.81381 -21.33345 -20.99267 -19.73341 -18.81230 -17.08961 -16.68123 -16.51908 -15.79036 -15.43459 -14.87254 -14.46749 -14.35424 -13.84958 -13.80819 -13.24581 -12.98173 -12.84725 -12.69101 -12.48161 -12.45631 -12.32018 -12.14834 -12.02368 -11.59514 -11.26993 -11.12494 -10.83786 -10.76025 -10.60893 -10.15868 -9.97422 -9.74476 -9.58805 -9.39114 -9.26465 -8.52664 -8.15290 -7.56131 -6.97278 -6.00871 -3.96745 2.11280 2.21068 2.89559 3.01081 3.29269 3.36181 3.37809 3.46133 4.38578 4.45041 4.55831 4.71096 4.80593 4.97217 5.09161 5.30292 5.30627 5.34818 5.46031 5.50159 5.56947 5.60011 5.68124 5.74582 5.79665 5.83686 5.91503 5.98959 6.08609 6.11733 6.17931 6.26063 6.32424 6.35627 6.53285 6.73424 6.87264 6.92860 7.52140 7.63962 7.79491 7.93352 8.67879 9.11877 9.61791 11.12460 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.007621 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.616578 B = 3673.252481 C = 5234.392104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.223 6.223 3 C -0.042 4.042 4 C 0.060 3.940 5 N -0.489 5.489 6 C 0.157 3.843 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.900 5.900 11 Si 0.869 3.131 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.123 3.877 16 C -0.015 4.015 17 C -0.231 4.231 18 C -0.220 4.220 19 C -0.054 4.054 20 O -0.156 6.156 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.121 4.121 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.000 1.000 31 H 0.262 0.738 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 8.303 14.798 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S 0.007 5.993 3 C -0.152 4.152 4 C -0.071 4.071 5 N -0.209 5.209 6 C 0.032 3.968 7 C -0.537 4.537 8 H 0.102 0.898 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.697 3.303 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.196 1.196 15 C -0.005 4.005 16 C -0.068 4.068 17 C -0.251 4.251 18 C -0.239 4.239 19 C -0.123 4.123 20 O -0.050 6.050 21 C -0.166 4.166 22 C -0.177 4.177 23 C -0.159 4.159 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.210 0.790 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.434 6.628 14.418 16.773 hybrid contribution -1.417 3.080 -0.498 3.427 sum 4.018 9.708 13.919 17.440 Atomic orbital electron populations 1.23249 0.95328 1.05443 1.04685 1.86304 1.06651 1.09259 1.97135 1.24219 0.99795 0.94207 0.97006 1.22123 0.99807 0.95229 0.89909 1.62390 1.01243 1.53612 1.03687 1.20371 0.91166 0.96298 0.89008 1.20972 1.31306 1.03382 0.98061 0.89770 1.24839 0.96288 0.95874 0.96009 1.69889 1.43531 1.32998 1.07476 0.86956 0.80273 0.84671 0.78381 1.20273 1.21299 1.19650 1.21318 0.91916 0.84717 1.02538 1.24053 1.01439 0.98381 0.82969 1.21649 1.09978 0.92674 1.00806 1.21705 1.08505 0.99333 0.94402 1.24020 1.04899 0.84003 0.99332 1.84296 1.66248 1.20533 1.33928 1.23244 0.98043 0.98893 0.96443 1.22841 0.97263 0.97434 1.00158 1.23104 0.94128 0.98108 1.00604 0.91710 0.89945 0.88952 0.93106 0.91333 0.96219 0.98240 0.92795 0.87989 0.88150 0.83833 0.84192 0.78993 0.91468 0.89054 0.91118 0.89984 0.89299 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 10.47 101.05 1.06 -0.63 16 2 S -0.22 -3.49 21.20 -107.50 -2.28 -5.77 16 3 C -0.04 -0.57 0.88 -89.81 -0.08 -0.65 16 4 C 0.06 0.98 4.14 -3.82 -0.02 0.97 16 5 N -0.49 -9.67 3.92 -237.52 -0.93 -10.60 16 6 C 0.16 3.76 3.70 -4.97 -0.02 3.74 16 7 C -0.50 -14.04 9.27 -34.44 -0.32 -14.36 16 8 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 11 Si 0.87 21.92 27.37 -169.99 -4.65 17.26 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.62 6.69 56.52 0.38 -6.25 16 15 C 0.12 2.27 5.41 -4.98 -0.03 2.24 16 16 C -0.02 -0.27 5.02 -35.63 -0.18 -0.45 16 17 C -0.23 -3.49 8.78 -39.70 -0.35 -3.84 16 18 C -0.22 -3.15 10.91 -39.70 -0.43 -3.58 16 19 C -0.05 -0.84 12.09 29.42 0.36 -0.49 16 20 O -0.16 -3.08 9.30 5.72 0.05 -3.02 16 21 C -0.13 -1.40 7.26 -25.92 -0.19 -1.59 16 22 C -0.14 -1.40 7.49 -25.92 -0.19 -1.59 16 23 C -0.12 -1.45 6.40 -25.92 -0.17 -1.61 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.35 7.96 -51.92 -0.41 0.93 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.82 4.74 -51.93 -0.25 0.57 16 28 H 0.07 1.18 7.30 -51.93 -0.38 0.80 16 29 H 0.02 0.49 6.96 -51.93 -0.36 0.12 16 30 H 0.00 0.00 4.81 -51.93 -0.25 -0.25 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.10 2.12 7.66 -51.93 -0.40 1.72 16 33 H 0.10 1.59 4.72 -51.93 -0.25 1.35 16 34 H 0.14 1.85 5.52 -52.48 -0.29 1.56 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.19 2.31 8.06 -52.48 -0.42 1.89 16 37 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.85 6.78 -51.93 -0.35 0.50 16 41 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.08 1.06 3.47 -51.93 -0.18 0.88 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -31.22 335.06 -8.71 -39.93 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.07 Total: 3.92 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.65 Total: -19.86 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.16 Total: -37.51 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.05 Total: -3.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.65 Total: 17.26 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.28 Total: -5.77 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.22 -8.71 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290466180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.890 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds