Wall clock time and date at job start Tue Mar 31 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81405 * 103.00209 * 2 1 4 4 C 1.52997 * 112.84668 * 299.51016 * 3 2 1 5 5 N 1.46901 * 109.47264 * 310.20643 * 4 3 2 6 6 C 1.46901 * 110.99763 * 158.50633 * 5 4 3 7 7 C 1.50706 * 109.46858 * 200.85997 * 6 5 4 8 8 H 1.07999 * 120.00114 * 5.02741 * 7 6 5 9 9 C 1.37875 * 119.99957 * 185.02759 * 7 6 5 10 10 N 1.31520 * 119.99838 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99982 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47332 * 89.99748 * 11 9 7 13 13 H 1.48507 * 109.46664 * 209.99898 * 11 9 7 14 14 H 1.48503 * 109.46845 * 329.99248 * 11 9 7 15 15 C 1.46900 * 110.99746 * 282.45595 * 5 4 3 16 16 C 1.50696 * 109.47278 * 297.16960 * 15 5 4 17 17 C 1.34515 * 125.78910 * 94.28301 * 16 15 5 18 18 C 1.41377 * 106.84024 * 180.02562 * 17 16 15 19 19 C 1.34514 * 106.84259 * 0.02562 * 18 17 16 20 20 O 1.34297 * 108.42070 * 0.02562 * 19 18 17 21 21 C 1.53780 * 113.68898 * 70.77649 * 3 2 1 22 22 C 1.53777 * 87.07963 * 139.99226 * 21 3 2 23 23 C 1.53774 * 113.61196 * 168.31384 * 3 2 1 24 24 H 1.08997 * 109.46948 * 305.15804 * 1 2 3 25 25 H 1.08999 * 109.46704 * 65.15307 * 1 2 3 26 26 H 1.08991 * 109.47390 * 185.15550 * 1 2 3 27 27 H 1.09000 * 109.47062 * 190.20552 * 4 3 2 28 28 H 1.09004 * 109.47465 * 70.20996 * 4 3 2 29 29 H 1.08999 * 109.46889 * 320.85440 * 6 5 4 30 30 H 1.08992 * 109.47276 * 80.85926 * 6 5 4 31 31 H 0.96996 * 119.99750 * 180.02562 * 10 9 7 32 32 H 1.09007 * 109.46446 * 177.17265 * 15 5 4 33 33 H 1.09000 * 109.47127 * 57.17655 * 15 5 4 34 34 H 1.08004 * 126.57662 * 359.97438 * 17 16 15 35 35 H 1.08000 * 126.57710 * 180.02562 * 18 17 16 36 36 H 1.08005 * 125.78544 * 180.25923 * 19 18 17 37 37 H 1.08998 * 113.61531 * 254.53942 * 21 3 2 38 38 H 1.09004 * 113.61580 * 25.44953 * 21 3 2 39 39 H 1.08997 * 113.62043 * 220.01637 * 22 21 3 40 40 H 1.09003 * 113.69252 * 89.12660 * 22 21 3 41 41 H 1.08997 * 113.61927 * 334.48016 * 23 3 2 42 42 H 1.08999 * 113.61481 * 105.39113 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 1.6791 2.5026 -1.2270 5 7 2.0502 1.7664 -2.4429 6 6 1.1627 2.1145 -3.5605 7 6 1.2135 1.0248 -4.6004 8 1 1.7779 0.1237 -4.4112 9 6 0.5395 1.1784 -5.7933 10 7 0.5843 0.2277 -6.7010 11 14 -0.4360 2.7374 -6.1209 12 1 0.4413 3.7425 -6.7732 13 1 -1.5812 2.4262 -7.0137 14 1 -0.9437 3.2827 -4.8363 15 6 3.4567 2.0046 -2.7937 16 6 3.6568 3.4658 -3.1031 17 6 4.0691 4.4049 -2.2327 18 6 4.1166 5.6274 -2.9412 19 6 3.7299 5.3624 -4.2020 20 8 3.4519 4.0518 -4.2941 21 6 1.9094 2.4739 1.3297 22 6 3.2277 3.2427 1.1408 23 6 3.7052 2.0572 0.2854 24 1 -0.3633 0.5917 0.8402 25 1 -0.3633 0.4318 -0.9326 26 1 -0.3634 -1.0234 0.0923 27 1 2.1027 3.5061 -1.2663 28 1 0.5932 2.5691 -1.1597 29 1 0.1415 2.2197 -3.1942 30 1 1.4885 3.0553 -4.0039 31 1 0.1105 0.3360 -7.5404 32 1 3.7188 1.4088 -3.6682 33 1 4.0934 1.7199 -1.9560 34 1 4.3156 4.2540 -1.1920 35 1 4.4075 6.5894 -2.5459 36 1 3.6592 6.0811 -5.0051 37 1 1.0242 3.1085 1.2893 38 1 1.9134 1.8054 2.1907 39 1 3.7940 3.3718 2.0631 40 1 3.1172 4.1701 0.5788 41 1 4.2001 1.2750 0.8609 42 1 4.2696 2.3557 -0.5980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290466180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:25 Heat of formation + Delta-G solvation = 38.013132 kcal Electronic energy + Delta-G solvation = -23070.940512 eV Core-core repulsion = 19951.729744 eV Total energy + Delta-G solvation = -3119.210768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.53303 -40.50887 -37.72457 -34.69032 -33.86207 -31.59541 -30.52386 -29.60219 -28.06415 -26.67547 -26.19331 -24.27305 -22.61815 -22.51131 -21.13418 -19.87585 -18.93344 -18.03499 -17.88808 -17.12841 -16.76055 -16.26636 -16.11403 -15.75334 -15.36626 -15.02945 -14.61180 -14.38995 -14.08832 -14.04603 -13.89767 -13.62238 -13.57374 -13.45829 -13.33204 -13.04482 -12.70566 -12.54201 -12.39143 -12.34286 -11.91816 -11.74336 -11.58929 -11.15278 -11.02431 -10.82300 -10.74946 -10.48203 -9.41913 -9.09910 -8.27577 -8.22989 -6.28041 0.84958 1.06801 1.27698 1.28799 1.38323 1.74133 1.86919 2.25622 2.31235 3.06033 3.09064 3.57049 3.69606 3.79224 3.88801 3.89109 4.13171 4.19259 4.33662 4.40028 4.41629 4.42891 4.56271 4.65265 4.66397 4.78161 4.86281 4.90398 4.90982 4.95312 4.98652 5.07065 5.11586 5.17809 5.21840 5.30717 5.48847 5.55073 5.69488 5.94195 6.25025 6.35479 6.61500 6.78523 7.34308 8.89556 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.007621 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.616578 B = 3673.252481 C = 5234.392104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.274 6.274 3 C -0.041 4.041 4 C 0.066 3.934 5 N -0.501 5.501 6 C 0.174 3.826 7 C -0.499 4.499 8 H 0.039 0.961 9 C 0.013 3.987 10 N -0.947 5.947 11 Si 0.937 3.063 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.256 1.256 15 C 0.131 3.869 16 C -0.052 4.052 17 C -0.208 4.208 18 C -0.213 4.213 19 C -0.066 4.066 20 O -0.199 6.199 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.122 4.122 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.015 0.985 30 H -0.003 1.003 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.222 0.778 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 11.620 17.348 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.044 6.044 3 C -0.152 4.152 4 C -0.064 4.064 5 N -0.222 5.222 6 C 0.047 3.953 7 C -0.537 4.537 8 H 0.057 0.943 9 C -0.184 4.184 10 N -0.588 5.588 11 Si 0.762 3.238 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.181 1.181 15 C 0.003 3.997 16 C -0.104 4.104 17 C -0.228 4.228 18 C -0.232 4.232 19 C -0.134 4.134 20 O -0.095 6.095 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.160 4.160 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.015 0.985 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.187 0.813 35 H 0.194 0.806 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.715 9.950 17.002 20.512 hybrid contribution -1.404 2.003 -1.274 2.758 sum 4.311 11.952 15.728 20.219 Atomic orbital electron populations 1.23202 0.93964 1.06219 1.04204 1.86464 1.08402 1.12377 1.97165 1.24339 1.01510 0.91990 0.97326 1.22112 0.99408 0.95686 0.89222 1.62242 1.01408 1.55011 1.03565 1.20001 0.91757 0.94271 0.89302 1.21167 1.30033 1.03049 0.99501 0.94287 1.25698 0.97606 0.99373 0.95771 1.70045 1.45133 1.35442 1.08220 0.85867 0.78789 0.80336 0.78846 1.19607 1.20581 1.18050 1.21125 0.91370 0.85476 1.01764 1.23876 1.04642 0.98260 0.83628 1.21950 1.07267 0.92176 1.01396 1.22126 1.07174 1.00334 0.93569 1.24789 1.04486 0.82930 1.01189 1.84238 1.67554 1.22601 1.35129 1.23237 0.99073 0.98699 0.94629 1.22801 0.96285 0.96370 1.00726 1.23151 0.92603 0.99369 1.00869 0.89201 0.92653 0.88243 0.92098 0.92344 0.96725 0.98523 0.92635 0.92150 0.85735 0.81333 0.80614 0.76206 0.90822 0.88023 0.88617 0.89580 0.88709 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 10.47 113.37 1.19 -1.84 16 2 S -0.27 -8.52 21.20 -56.49 -1.20 -9.72 16 3 C -0.04 -1.06 0.88 -10.27 -0.01 -1.07 16 4 C 0.07 2.09 4.14 86.30 0.36 2.44 16 5 N -0.50 -20.32 3.92 -905.36 -3.55 -23.86 16 6 C 0.17 8.50 3.70 85.56 0.32 8.82 16 7 C -0.50 -29.57 9.27 25.60 0.24 -29.34 16 8 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 9 C 0.01 0.75 5.47 84.65 0.46 1.21 16 10 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 11 Si 0.94 45.99 27.37 68.60 1.88 47.86 16 12 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.26 -11.85 6.69 99.48 0.67 -11.18 16 15 C 0.13 4.95 5.41 85.56 0.46 5.41 16 16 C -0.05 -1.83 5.02 24.83 0.12 -1.71 16 17 C -0.21 -5.66 8.78 22.19 0.19 -5.47 16 18 C -0.21 -5.28 10.91 22.19 0.24 -5.04 16 19 C -0.07 -1.93 12.09 66.97 0.81 -1.12 16 20 O -0.20 -7.80 9.30 -2.45 -0.02 -7.83 16 21 C -0.12 -2.18 7.26 31.12 0.23 -1.95 16 22 C -0.12 -1.95 7.49 31.12 0.23 -1.72 16 23 C -0.12 -2.57 6.40 31.12 0.20 -2.37 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.84 7.96 -2.39 -0.02 1.83 16 26 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.06 1.82 4.74 -2.39 -0.01 1.81 16 28 H 0.06 1.96 7.30 -2.39 -0.02 1.94 16 29 H 0.01 0.73 6.96 -2.39 -0.02 0.71 16 30 H 0.00 -0.14 4.81 -2.39 -0.01 -0.15 16 31 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.06 2.73 7.66 -2.38 -0.02 2.71 16 33 H 0.13 3.97 4.72 -2.39 -0.01 3.96 16 34 H 0.17 3.62 5.52 -2.91 -0.02 3.61 16 35 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.22 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.10 1.75 8.10 -2.38 -0.02 1.74 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.34 6.78 -2.39 -0.02 1.32 16 41 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 42 H 0.08 1.76 3.47 -2.39 -0.01 1.75 16 Total: -1.00 -71.74 335.06 3.43 -68.32 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.98 Total: 19.42 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 5.04 Total: -33.74 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -3.25 Total: -84.31 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.02 Total: -7.83 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.86 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.20 Total: -9.72 kcal Total: -71.74 3.43 -68.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290466180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.328 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds