Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 N 1.46507 * 109.47136 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99989 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50693 * 119.99815 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47271 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47268 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99910 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99830 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99732 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46993 * 90.00235 * 18 16 14 20 20 H 1.48496 * 109.47175 * 209.99896 * 18 16 14 21 21 H 1.48496 * 109.47239 * 330.00088 * 18 16 14 22 22 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 23 23 C 1.38326 * 120.03416 * 359.95854 * 22 6 5 24 24 F 1.35098 * 120.05006 * 179.97438 * 23 22 6 25 25 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 26 26 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 27 27 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 28 28 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 29 29 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 31 31 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 32 32 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 33 33 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 34 34 H 0.96992 * 119.99573 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.47361 * 299.99445 * 12 10 9 36 36 H 1.09001 * 109.47617 * 59.99930 * 12 10 9 37 37 H 1.09004 * 109.47392 * 299.99540 * 13 12 10 38 38 H 1.08997 * 109.47345 * 59.99414 * 13 12 10 39 39 H 0.96992 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.98065 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 7 4.8799 6.7756 -1.4671 10 6 5.1849 7.3714 -2.6369 11 8 4.9108 6.8259 -3.6848 12 6 5.8675 8.7148 -2.6427 13 6 6.0989 9.1631 -4.0871 14 6 6.7810 10.5069 -4.0929 15 1 7.0254 10.9924 -3.1597 16 6 7.0939 11.1161 -5.2897 17 7 6.7966 10.5246 -6.4261 18 14 7.9400 12.7814 -5.2968 19 1 9.4125 12.5885 -5.2952 20 1 7.5408 13.5342 -6.5130 21 1 7.5395 13.5453 -4.0881 22 6 4.0580 2.5196 -0.0058 23 6 3.4334 1.2855 -0.0001 24 9 4.1713 0.1538 0.0047 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2138 2.3201 -0.0063 29 1 1.3344 4.5114 -0.0166 30 1 3.3564 5.7503 0.4934 31 1 4.9431 4.9440 0.4974 32 1 4.8456 4.7399 -1.9719 33 1 3.2588 5.5462 -1.9759 34 1 5.0994 7.2116 -0.6290 35 1 5.2388 9.4441 -2.1319 36 1 6.8257 8.6378 -2.1287 37 1 6.7279 8.4338 -4.5976 38 1 5.1410 9.2400 -4.6015 39 1 7.0171 10.9529 -7.2679 40 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291701612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -113.941407 kcal Electronic energy + Delta-G solvation = -22075.098207 eV Core-core repulsion = 18383.085019 eV Total energy + Delta-G solvation = -3692.013187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.03826 -40.46171 -39.18522 -38.20619 -35.13196 -33.43154 -32.30215 -31.11601 -30.91130 -28.86326 -27.40740 -25.64701 -23.59862 -23.16501 -21.57534 -21.33899 -19.61160 -18.68675 -17.33598 -17.14170 -16.76804 -16.51857 -15.74825 -15.60842 -15.37576 -15.35532 -15.18552 -14.64730 -14.49707 -14.34554 -14.02047 -13.26007 -13.16791 -12.81755 -12.61726 -12.26112 -12.20561 -12.17079 -11.89117 -11.56606 -11.32144 -11.29114 -11.14442 -10.91774 -10.59017 -9.94383 -9.65447 -9.31336 -9.17365 -9.01063 -8.78340 -8.47611 -8.31008 -5.95085 -3.99509 0.75708 0.82506 2.71950 3.11898 3.27633 3.33930 3.39741 3.42254 3.55269 3.87455 4.26533 4.39225 4.48437 4.56457 4.69336 4.76228 4.81829 4.89308 4.94730 5.02857 5.12246 5.34771 5.39715 5.52164 5.58319 5.65497 5.71361 5.79287 5.99325 6.15551 6.24359 6.24429 6.26009 6.71679 6.85810 6.90980 7.75519 7.87725 7.89446 8.08535 8.39841 8.79845 9.09311 9.63898 11.15868 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.002059 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.656452 B =13593.289395 C =13647.311157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.091 3.909 4 C -0.179 4.179 5 C -0.082 4.082 6 C -0.086 4.086 7 C -0.088 4.088 8 C 0.123 3.877 9 N -0.746 5.746 10 C 0.509 3.491 11 O -0.534 6.534 12 C -0.130 4.130 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.109 4.109 23 C 0.071 3.929 24 F -0.133 7.133 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 -18.425 18.993 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.045 3.955 4 C -0.198 4.198 5 C -0.100 4.100 6 C -0.087 4.087 7 C -0.126 4.126 8 C -0.001 4.001 9 N -0.401 5.401 10 C 0.297 3.703 11 O -0.409 6.409 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.128 4.128 23 C 0.051 3.949 24 F -0.111 7.111 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.768 -19.047 17.999 29.151 hybrid contribution 0.388 0.941 0.331 1.071 sum -12.380 -18.106 18.330 28.584 Atomic orbital electron populations 1.23128 0.77831 1.04340 1.01588 1.86134 1.21802 1.25825 1.88714 1.19029 0.90848 0.85697 0.99961 1.21138 1.00358 0.91395 1.06925 1.20960 0.93894 0.97470 0.97675 1.19458 0.93307 0.94380 1.01524 1.20758 1.01297 0.93205 0.97289 1.21219 0.98176 0.85527 0.95165 1.46208 1.63526 1.21023 1.09328 1.21569 0.77930 0.88123 0.82666 1.90676 1.52740 1.65858 1.31661 1.21863 0.99523 0.91030 1.04577 1.18902 0.97856 0.95676 0.87701 1.21229 1.39099 1.03861 0.92353 0.92591 1.25038 0.95966 0.97779 0.95684 1.69996 1.47085 1.38462 0.97281 0.86583 0.79769 0.84063 0.77471 1.20685 1.21241 1.19902 1.20955 1.01223 0.89687 1.00935 1.16941 0.85932 0.83018 1.08991 1.91506 1.76385 1.48969 1.94256 0.92403 0.92292 0.87917 0.84380 0.84735 0.89854 0.89938 0.91648 0.91658 0.76911 0.90242 0.90234 0.95832 0.95837 0.92952 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.03 10.36 -19.58 -0.20 -3.23 16 3 C 0.09 0.90 6.69 -39.17 -0.26 0.64 16 4 C -0.18 -1.41 9.04 -39.45 -0.36 -1.76 16 5 C -0.08 -0.63 9.69 -39.60 -0.38 -1.02 16 6 C -0.09 -0.73 5.13 -104.61 -0.54 -1.27 16 7 C -0.09 -0.68 5.46 -27.88 -0.15 -0.83 16 8 C 0.12 1.44 5.66 -4.04 -0.02 1.42 16 9 N -0.75 -9.91 5.56 -60.29 -0.33 -10.25 16 10 C 0.51 9.70 7.83 -10.99 -0.09 9.61 16 11 O -0.53 -12.72 15.98 5.56 0.09 -12.63 16 12 C -0.13 -2.61 5.64 -27.89 -0.16 -2.77 16 13 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 14 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.11 -1.02 9.67 -39.54 -0.38 -1.40 16 23 C 0.07 0.77 7.31 -39.30 -0.29 0.48 16 24 F -0.13 -1.63 17.11 2.25 0.04 -1.59 16 25 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 26 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.14 0.74 6.30 -52.48 -0.33 0.41 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -36.17 349.26 -7.25 -43.42 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.65 Total: -2.19 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.17 Total: -8.64 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.40 Total: -37.06 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.11 Total: -15.86 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.17 -7.25 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291701612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.525 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds