Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46958 * 270.02149 * 7 6 5 9 9 N 1.46507 * 109.47136 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99989 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.50693 * 119.99815 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47271 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47268 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99910 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99830 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99732 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46993 * 90.00235 * 18 16 14 20 20 H 1.48496 * 109.47175 * 209.99896 * 18 16 14 21 21 H 1.48496 * 109.47239 * 330.00088 * 18 16 14 22 22 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 23 23 C 1.38326 * 120.03416 * 359.95854 * 22 6 5 24 24 F 1.35098 * 120.05006 * 179.97438 * 23 22 6 25 25 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 26 26 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 27 27 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 28 28 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 29 29 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 31 31 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 32 32 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 33 33 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 34 34 H 0.96992 * 119.99573 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.47361 * 299.99445 * 12 10 9 36 36 H 1.09001 * 109.47617 * 59.99930 * 12 10 9 37 37 H 1.09004 * 109.47392 * 299.99540 * 13 12 10 38 38 H 1.08997 * 109.47345 * 59.99414 * 13 12 10 39 39 H 0.96992 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.98065 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 6 4.2167 5.4692 -1.4614 9 7 4.8799 6.7756 -1.4671 10 6 5.1849 7.3714 -2.6369 11 8 4.9108 6.8259 -3.6848 12 6 5.8675 8.7148 -2.6427 13 6 6.0989 9.1631 -4.0871 14 6 6.7810 10.5069 -4.0929 15 1 7.0254 10.9924 -3.1597 16 6 7.0939 11.1161 -5.2897 17 7 6.7966 10.5246 -6.4261 18 14 7.9400 12.7814 -5.2968 19 1 9.4125 12.5885 -5.2952 20 1 7.5408 13.5342 -6.5130 21 1 7.5395 13.5453 -4.0881 22 6 4.0580 2.5196 -0.0058 23 6 3.4334 1.2855 -0.0001 24 9 4.1713 0.1538 0.0047 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2138 2.3201 -0.0063 29 1 1.3344 4.5114 -0.0166 30 1 3.3564 5.7503 0.4934 31 1 4.9431 4.9440 0.4974 32 1 4.8456 4.7399 -1.9719 33 1 3.2588 5.5462 -1.9759 34 1 5.0994 7.2116 -0.6290 35 1 5.2388 9.4441 -2.1319 36 1 6.8257 8.6378 -2.1287 37 1 6.7279 8.4338 -4.5976 38 1 5.1410 9.2400 -4.6015 39 1 7.0171 10.9529 -7.2679 40 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291701612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -138.814880 kcal Electronic energy + Delta-G solvation = -22076.176801 eV Core-core repulsion = 18383.085019 eV Total energy + Delta-G solvation = -3693.091782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.87039 -41.11885 -40.60109 -38.92082 -36.28907 -35.51404 -33.41478 -32.68449 -31.75438 -29.67156 -28.22535 -27.31013 -24.72089 -23.81490 -23.20981 -22.19141 -21.09509 -19.33108 -18.79131 -18.01483 -17.84432 -17.32264 -17.19769 -16.92642 -16.66563 -16.39241 -16.07747 -15.83137 -15.47607 -15.15832 -15.00014 -14.75883 -14.19608 -14.13180 -13.74290 -13.61681 -13.21734 -13.11927 -12.86243 -12.80335 -12.54707 -12.43782 -12.28431 -12.02422 -11.89805 -11.88365 -11.61049 -11.28521 -10.71535 -10.55602 -10.04773 -9.95209 -9.16657 -8.16471 -6.30500 0.09263 0.15371 1.43431 1.46244 1.57157 1.76119 2.17076 2.26236 2.44897 2.55919 3.16459 3.19053 3.65622 3.77002 3.98337 4.06510 4.17797 4.22412 4.25709 4.35200 4.36605 4.49171 4.56143 4.60051 4.63846 4.70506 4.84861 4.89326 5.05235 5.08844 5.15002 5.17726 5.49074 5.50410 5.55743 5.63933 5.65983 5.87826 6.19525 6.25958 6.68158 6.88674 7.39241 7.41736 8.96220 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.002059 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.656452 B =13593.289395 C =13647.311157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.080 3.920 4 C -0.178 4.178 5 C -0.078 4.078 6 C -0.093 4.093 7 C -0.073 4.073 8 C 0.122 3.878 9 N -0.717 5.717 10 C 0.509 3.491 11 O -0.593 6.593 12 C -0.119 4.119 13 C 0.040 3.960 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.254 1.254 22 C -0.113 4.113 23 C 0.035 3.965 24 F -0.150 7.150 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.420 0.580 35 H 0.107 0.893 36 H 0.105 0.895 37 H -0.020 1.020 38 H -0.019 1.019 39 H 0.262 0.738 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -16.753 21.734 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.034 3.966 4 C -0.196 4.196 5 C -0.096 4.096 6 C -0.094 4.094 7 C -0.110 4.110 8 C -0.002 4.002 9 N -0.371 5.371 10 C 0.297 3.703 11 O -0.473 6.473 12 C -0.159 4.159 13 C 0.002 3.998 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.178 1.178 22 C -0.132 4.132 23 C 0.016 3.984 24 F -0.129 7.129 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.257 0.743 35 H 0.125 0.875 36 H 0.124 0.876 37 H -0.002 1.002 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.349 -17.380 20.835 30.238 hybrid contribution 0.480 0.335 -0.506 0.774 sum -12.869 -17.045 20.329 29.486 Atomic orbital electron populations 1.23432 0.75665 1.05870 1.02786 1.86101 1.24174 1.26167 1.88729 1.19266 0.90784 0.86582 0.99973 1.21450 1.01619 0.90652 1.05912 1.21328 0.93835 0.98379 0.96047 1.19580 0.93796 0.94245 1.01793 1.20674 1.02768 0.93139 0.94418 1.21322 0.96950 0.83945 0.97945 1.45858 1.61569 1.21177 1.08462 1.21354 0.77699 0.87862 0.83350 1.90664 1.55413 1.67150 1.34120 1.21636 1.01730 0.92398 1.00141 1.18705 0.94687 0.94821 0.91567 1.21742 1.38637 1.04302 0.93297 0.90413 1.26173 0.96749 1.02576 0.95205 1.70182 1.48722 1.40781 0.98199 0.85302 0.78492 0.78281 0.78039 1.19798 1.21304 1.17751 1.21122 1.01822 0.89609 1.00617 1.17347 0.86735 0.83084 1.11272 1.91448 1.76867 1.49921 1.94653 0.90803 0.91357 0.86421 0.81778 0.82251 0.87267 0.88288 0.93462 0.92666 0.74276 0.87472 0.87643 1.00162 1.00008 0.92912 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.51 10.36 -92.97 -0.96 -7.48 16 3 C 0.08 1.57 6.69 22.53 0.15 1.72 16 4 C -0.18 -2.45 9.04 22.36 0.20 -2.24 16 5 C -0.08 -1.00 9.69 22.26 0.22 -0.79 16 6 C -0.09 -1.39 5.13 -19.85 -0.10 -1.50 16 7 C -0.07 -0.89 5.46 29.85 0.16 -0.73 16 8 C 0.12 2.65 5.66 86.38 0.49 3.14 16 9 N -0.72 -17.38 5.56 -463.06 -2.57 -19.95 16 10 C 0.51 19.16 7.83 87.66 0.69 19.85 16 11 O -0.59 -29.26 15.98 -3.03 -0.05 -29.31 16 12 C -0.12 -4.66 5.64 29.85 0.17 -4.49 16 13 C 0.04 2.22 4.26 29.85 0.13 2.35 16 14 C -0.54 -30.74 9.11 25.60 0.23 -30.50 16 15 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 16 C -0.01 -0.57 5.46 84.66 0.46 -0.11 16 17 N -0.94 -59.89 13.29 21.45 0.28 -59.60 16 18 Si 0.98 44.21 29.54 68.60 2.03 46.24 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 22 C -0.11 -2.06 9.67 22.29 0.22 -1.84 16 23 C 0.04 0.78 7.31 22.45 0.16 0.95 16 24 F -0.15 -3.90 17.11 44.97 0.77 -3.13 16 25 H 0.07 0.41 7.67 -2.39 -0.02 0.39 16 26 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.16 1.28 6.30 -2.91 -0.02 1.26 16 29 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.10 0.95 8.08 -2.39 -0.02 0.93 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.42 6.57 8.47 -92.71 -0.79 5.79 16 35 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H -0.02 -1.27 8.10 -2.38 -0.02 -1.29 16 38 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -83.74 349.26 4.05 -79.69 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.27 Total: 6.49 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.29 Total: -12.94 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.29 Total: -79.56 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.01 Total: -36.79 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.77 Total: -3.13 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -83.74 4.05 -79.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291701612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.125 kcal (2) G-P(sol) polarization free energy of solvation -83.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds