Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00149 * 2 1 4 4 C 1.38770 * 120.03981 * 0.02562 * 3 2 1 5 5 C 1.38140 * 119.98965 * 179.70027 * 4 3 2 6 6 C 1.38250 * 120.08135 * 0.53589 * 5 4 3 7 7 C 1.50696 * 119.95618 * 179.76585 * 6 5 4 8 8 C 1.50706 * 109.47259 * 264.72061 * 7 6 5 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72770 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47161 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47231 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47380 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99617 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00059 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00111 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47136 * 90.00568 * 18 16 14 20 20 H 1.48508 * 109.46834 * 210.00002 * 18 16 14 21 21 H 1.48491 * 109.47253 * 329.99715 * 18 16 14 22 22 C 1.38478 * 120.08486 * 359.48469 * 6 5 4 23 23 F 1.35102 * 119.99636 * 180.25619 * 22 6 5 24 24 C 1.38380 * 120.00404 * 0.23811 * 22 6 5 25 25 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46784 * 299.99915 * 1 2 3 27 27 H 1.08998 * 109.47630 * 60.00077 * 1 2 3 28 28 H 1.07995 * 120.00533 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.95758 * 180.29737 * 5 4 3 30 30 H 1.09001 * 109.47545 * 144.72401 * 7 6 5 31 31 H 1.08998 * 109.47669 * 24.72344 * 7 6 5 32 32 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 34 34 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 35 35 H 1.09004 * 109.47116 * 299.99365 * 12 11 10 36 36 H 1.08993 * 109.47352 * 59.99609 * 12 11 10 37 37 H 1.08999 * 109.47343 * 300.00090 * 13 12 11 38 38 H 1.09010 * 109.47369 * 59.99437 * 13 12 11 39 39 H 0.96995 * 120.00404 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.03982 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6054 0.0068 6 6 3.2998 3.6786 0.0013 7 6 3.9822 5.0222 0.0029 8 6 4.3204 5.4155 -1.4121 9 8 4.0349 4.6775 -2.3313 10 7 4.9347 6.5899 -1.6566 11 6 5.2630 6.9724 -3.0322 12 6 5.9492 8.3398 -3.0313 13 6 6.2926 8.7391 -4.4678 14 6 6.9680 10.0863 -4.4670 15 1 7.1351 10.6059 -3.5352 16 6 7.3715 10.6558 -5.6560 17 7 7.9605 11.8317 -5.6554 18 14 7.0817 9.7572 -7.2679 19 1 5.7581 10.1437 -7.8190 20 1 8.1468 10.1219 -8.2364 21 1 7.1100 8.2918 -7.0296 22 6 4.0564 2.5187 0.0004 23 9 5.4054 2.5923 0.0003 24 6 3.4307 1.2844 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2125 2.3195 0.0005 29 1 1.3312 4.5113 0.0121 30 1 4.8972 4.9644 0.5924 31 1 3.3163 5.7675 0.4378 32 1 5.1588 7.1822 -0.9219 33 1 5.9326 6.2297 -3.4658 34 1 4.3483 7.0256 -3.6227 35 1 5.2791 9.0823 -2.5979 36 1 6.8638 8.2870 -2.4408 37 1 6.9627 7.9965 -4.9010 38 1 5.3781 8.7917 -5.0588 39 1 8.2447 12.2323 -6.4918 40 1 4.0202 0.3795 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352407774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = -110.212098 kcal Electronic energy + Delta-G solvation = -22446.287790 eV Core-core repulsion = 18754.436317 eV Total energy + Delta-G solvation = -3691.851472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.11465 -40.51663 -39.55354 -37.64178 -35.50280 -33.33526 -32.67709 -31.42634 -30.98972 -28.54396 -27.53425 -26.28724 -23.30070 -22.92499 -21.80760 -20.73110 -19.84980 -18.81243 -17.34356 -17.11877 -16.73942 -16.36358 -16.19781 -16.07684 -15.55265 -15.47980 -15.21726 -14.82321 -14.24136 -14.16471 -13.90615 -13.49767 -13.19600 -12.85297 -12.72013 -12.67740 -12.28483 -12.05660 -11.89270 -11.78502 -11.31759 -11.28529 -11.08015 -10.89190 -10.20627 -9.97278 -9.78355 -9.58630 -9.23097 -9.15714 -8.85414 -8.55796 -8.48836 -6.06587 -4.05279 0.85734 0.94376 2.72526 2.74541 3.12264 3.31194 3.38817 3.43518 3.51839 4.09741 4.34556 4.36961 4.44325 4.54724 4.69151 4.73175 4.90844 4.92765 4.97840 5.06351 5.23269 5.27503 5.28083 5.56548 5.65777 5.66683 5.69529 5.90161 6.01892 6.03243 6.34778 6.38275 6.44748 6.70040 6.79436 6.93475 7.22620 7.36101 7.63107 7.76500 8.33517 8.50094 8.97188 9.55711 11.06600 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031900 B = 0.002369 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.545118 B =11814.371386 C =12033.079137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.154 3.846 4 C -0.217 4.217 5 C -0.038 4.038 6 C -0.133 4.133 7 C -0.100 4.100 8 C 0.509 3.491 9 O -0.537 6.537 10 N -0.726 5.726 11 C 0.114 3.886 12 C -0.113 4.113 13 C -0.012 4.012 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.156 3.844 23 F -0.130 7.130 24 C -0.189 4.189 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.533 -21.273 16.619 31.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.108 3.892 4 C -0.236 4.236 5 C -0.056 4.056 6 C -0.134 4.134 7 C -0.139 4.139 8 C 0.294 3.706 9 O -0.414 6.414 10 N -0.377 5.377 11 C -0.008 4.008 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C 0.136 3.864 23 F -0.108 7.108 24 C -0.209 4.209 25 H 0.120 0.880 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.518 -21.861 15.813 31.125 hybrid contribution 0.051 0.153 -0.632 0.652 sum -15.467 -21.708 15.181 30.674 Atomic orbital electron populations 1.23115 0.77888 1.04202 1.01660 1.86066 1.21752 1.26549 1.88393 1.18580 0.91353 0.84439 0.94785 1.21224 1.00407 0.91953 1.10012 1.20655 0.92636 0.97669 0.94688 1.19229 0.93932 0.93133 1.07126 1.20553 1.02687 0.94909 0.95796 1.20452 0.77852 0.81452 0.90813 1.90718 1.52938 1.51567 1.46176 1.46151 1.60687 1.20374 1.10536 1.21647 1.00009 0.97827 0.81363 1.21700 0.99443 0.92911 1.01039 1.19508 0.96480 0.97432 0.91529 1.21094 1.38215 1.01721 0.94953 0.91000 1.25032 0.94554 0.94716 0.99215 1.69907 1.40762 1.16339 1.27163 0.86774 0.78030 0.80934 0.83561 1.20258 1.21356 1.18892 1.17037 0.76905 0.93082 0.99358 1.91518 1.28799 1.97075 1.93406 1.20167 0.92579 0.97510 1.10613 0.88020 0.92401 0.92299 0.84761 0.84664 0.87719 0.87450 0.76607 0.91834 0.91848 0.92115 0.92067 0.96308 0.96776 0.92697 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.88 10.50 -19.41 -0.20 -3.08 16 3 C 0.15 1.56 6.69 -39.22 -0.26 1.30 16 4 C -0.22 -1.91 9.04 -39.42 -0.36 -2.27 16 5 C -0.04 -0.36 9.67 -39.61 -0.38 -0.74 16 6 C -0.13 -1.47 4.38 -104.53 -0.46 -1.93 16 7 C -0.10 -0.98 5.60 -29.03 -0.16 -1.14 16 8 C 0.51 7.16 7.82 -10.98 -0.09 7.07 16 9 O -0.54 -9.89 16.03 5.56 0.09 -9.80 16 10 N -0.73 -9.76 5.56 -60.29 -0.33 -10.10 16 11 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 12 C -0.11 -2.10 5.27 -26.74 -0.14 -2.24 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 18 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 22 C 0.16 1.89 7.24 -39.44 -0.29 1.61 16 23 F -0.13 -1.70 16.56 2.25 0.04 -1.66 16 24 C -0.19 -2.10 9.97 -39.37 -0.39 -2.50 16 25 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 28 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 29 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 30 H 0.10 0.88 7.79 -51.93 -0.40 0.48 16 31 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 32 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.33 7.57 -51.92 -0.39 -0.07 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 40 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -34.99 344.98 -6.82 -41.81 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.61 Total: -1.11 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.10 Total: -11.44 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.44 Total: -37.10 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.11 Total: -12.88 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.99 -6.82 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352407774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.403 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds