Wall clock time and date at job start Tue Mar 31 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 117.00149 * 2 1 4 4 C 1.38770 * 120.03981 * 0.02562 * 3 2 1 5 5 C 1.38140 * 119.98965 * 179.70027 * 4 3 2 6 6 C 1.38250 * 120.08135 * 0.53589 * 5 4 3 7 7 C 1.50696 * 119.95618 * 179.76585 * 6 5 4 8 8 C 1.50706 * 109.47259 * 264.72061 * 7 6 5 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72770 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47161 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47231 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47380 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99617 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00059 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00111 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47136 * 90.00568 * 18 16 14 20 20 H 1.48508 * 109.46834 * 210.00002 * 18 16 14 21 21 H 1.48491 * 109.47253 * 329.99715 * 18 16 14 22 22 C 1.38478 * 120.08486 * 359.48469 * 6 5 4 23 23 F 1.35102 * 119.99636 * 180.25619 * 22 6 5 24 24 C 1.38380 * 120.00404 * 0.23811 * 22 6 5 25 25 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46784 * 299.99915 * 1 2 3 27 27 H 1.08998 * 109.47630 * 60.00077 * 1 2 3 28 28 H 1.07995 * 120.00533 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.95758 * 180.29737 * 5 4 3 30 30 H 1.09001 * 109.47545 * 144.72401 * 7 6 5 31 31 H 1.08998 * 109.47669 * 24.72344 * 7 6 5 32 32 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 34 34 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 35 35 H 1.09004 * 109.47116 * 299.99365 * 12 11 10 36 36 H 1.08993 * 109.47352 * 59.99609 * 12 11 10 37 37 H 1.08999 * 109.47343 * 300.00090 * 13 12 11 38 38 H 1.09010 * 109.47369 * 59.99437 * 13 12 11 39 39 H 0.96995 * 120.00404 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.03982 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6054 0.0068 6 6 3.2998 3.6786 0.0013 7 6 3.9822 5.0222 0.0029 8 6 4.3204 5.4155 -1.4121 9 8 4.0349 4.6775 -2.3313 10 7 4.9347 6.5899 -1.6566 11 6 5.2630 6.9724 -3.0322 12 6 5.9492 8.3398 -3.0313 13 6 6.2926 8.7391 -4.4678 14 6 6.9680 10.0863 -4.4670 15 1 7.1351 10.6059 -3.5352 16 6 7.3715 10.6558 -5.6560 17 7 7.9605 11.8317 -5.6554 18 14 7.0817 9.7572 -7.2679 19 1 5.7581 10.1437 -7.8190 20 1 8.1468 10.1219 -8.2364 21 1 7.1100 8.2918 -7.0296 22 6 4.0564 2.5187 0.0004 23 9 5.4054 2.5923 0.0003 24 6 3.4307 1.2844 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2125 2.3195 0.0005 29 1 1.3312 4.5113 0.0121 30 1 4.8972 4.9644 0.5924 31 1 3.3163 5.7675 0.4378 32 1 5.1588 7.1822 -0.9219 33 1 5.9326 6.2297 -3.4658 34 1 4.3483 7.0256 -3.6227 35 1 5.2791 9.0823 -2.5979 36 1 6.8638 8.2870 -2.4408 37 1 6.9627 7.9965 -4.9010 38 1 5.3781 8.7917 -5.0588 39 1 8.2447 12.2323 -6.4918 40 1 4.0202 0.3795 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352407774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:45 Heat of formation + Delta-G solvation = -133.879769 kcal Electronic energy + Delta-G solvation = -22447.314097 eV Core-core repulsion = 18754.436317 eV Total energy + Delta-G solvation = -3692.877780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.01689 -41.25589 -40.57854 -38.37818 -36.94907 -35.13354 -33.68424 -33.02856 -31.73957 -29.56450 -28.55617 -27.30645 -24.64017 -23.92346 -22.70033 -22.23227 -21.12847 -19.50693 -18.98175 -18.08996 -18.00390 -17.25600 -17.02629 -16.86290 -16.70149 -16.38912 -16.34711 -15.95906 -15.64192 -15.43781 -14.79448 -14.68668 -14.59719 -14.04592 -13.82190 -13.69966 -13.34709 -13.29506 -12.82211 -12.72857 -12.69985 -12.63677 -11.94697 -11.93077 -11.89571 -11.78167 -11.59533 -11.33409 -10.90425 -10.76580 -10.06948 -9.91915 -9.22184 -8.29766 -6.33445 0.09563 0.20216 1.35909 1.37973 1.49667 1.66138 2.14816 2.21769 2.35761 2.62672 3.05815 3.34664 3.59663 3.68839 3.92166 3.98474 4.15324 4.18663 4.21132 4.26968 4.41540 4.41717 4.50691 4.52717 4.61031 4.76271 4.88781 4.90549 4.98203 4.98820 5.04053 5.19519 5.30710 5.40685 5.51636 5.55654 5.64848 5.65882 6.27190 6.31613 6.60551 6.74677 7.28819 7.31361 8.86505 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031900 B = 0.002369 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.545118 B =11814.371386 C =12033.079137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.148 3.852 4 C -0.213 4.213 5 C -0.040 4.040 6 C -0.148 4.148 7 C -0.091 4.091 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.717 5.717 11 C 0.127 3.873 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.530 4.530 15 H 0.039 0.961 16 C 0.004 3.996 17 N -0.949 5.949 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.250 1.250 22 C 0.129 3.871 23 F -0.144 7.144 24 C -0.208 4.208 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.119 0.881 31 H 0.147 0.853 32 H 0.417 0.583 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.266 0.734 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -22.249 17.157 33.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.102 3.898 4 C -0.231 4.231 5 C -0.058 4.058 6 C -0.150 4.150 7 C -0.130 4.130 8 C 0.295 3.705 9 O -0.464 6.464 10 N -0.369 5.369 11 C 0.003 3.997 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.770 3.230 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.174 1.174 22 C 0.110 3.890 23 F -0.122 7.122 24 C -0.228 4.228 25 H 0.138 0.862 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.181 0.819 29 H 0.181 0.819 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.254 0.746 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.708 -22.834 16.398 33.225 hybrid contribution 0.679 0.441 -0.722 1.085 sum -17.029 -22.393 15.676 32.205 Atomic orbital electron populations 1.23441 0.75740 1.05916 1.02744 1.86051 1.24018 1.26287 1.88199 1.18729 0.91177 0.85416 0.94509 1.21585 1.01864 0.91240 1.08457 1.21051 0.92182 0.98993 0.93526 1.19479 0.94799 0.93133 1.07560 1.20604 1.04212 0.95305 0.92874 1.21189 0.76615 0.80570 0.92145 1.90700 1.54834 1.52865 1.48040 1.45983 1.60399 1.20814 1.09737 1.21262 0.99167 0.96087 0.83197 1.21473 1.00006 0.94228 0.98035 1.19478 0.96063 0.94742 0.94842 1.21460 1.38074 1.03506 0.93730 0.94285 1.25982 0.94433 0.95535 1.03344 1.70051 1.42399 1.18218 1.28322 0.85705 0.78296 0.80246 0.78705 1.19133 1.21022 1.17387 1.17359 0.76571 0.94127 1.00942 1.91471 1.29819 1.97188 1.93745 1.20316 0.93571 0.97417 1.11462 0.86196 0.90802 0.91600 0.81851 0.81898 0.86304 0.83551 0.74620 0.93144 0.92414 0.91358 0.91792 0.96383 0.96212 0.92511 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.69 10.50 -92.37 -0.97 -6.66 16 3 C 0.15 2.85 6.69 22.50 0.15 3.00 16 4 C -0.21 -3.23 9.04 22.37 0.20 -3.03 16 5 C -0.04 -0.64 9.67 22.25 0.22 -0.42 16 6 C -0.15 -3.04 4.38 -19.81 -0.09 -3.13 16 7 C -0.09 -1.55 5.60 29.10 0.16 -1.38 16 8 C 0.51 13.37 7.82 87.66 0.69 14.06 16 9 O -0.58 -21.08 16.03 -3.04 -0.05 -21.13 16 10 N -0.72 -17.80 5.56 -463.05 -2.57 -20.37 16 11 C 0.13 4.05 5.67 86.38 0.49 4.54 16 12 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 13 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 14 C -0.53 -30.12 9.66 25.60 0.25 -29.87 16 15 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 16 C 0.00 0.23 5.47 84.66 0.46 0.70 16 17 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 18 Si 0.95 44.70 27.47 68.60 1.88 46.59 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 22 C 0.13 3.14 7.24 22.36 0.16 3.30 16 23 F -0.14 -3.85 16.56 44.97 0.74 -3.10 16 24 C -0.21 -4.69 9.97 22.41 0.22 -4.47 16 25 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 27 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 28 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 29 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.12 1.71 7.79 -2.39 -0.02 1.70 16 31 H 0.15 1.33 8.05 -2.39 -0.02 1.31 16 32 H 0.42 7.53 8.47 -92.71 -0.79 6.75 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 38 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -77.45 344.98 3.86 -73.59 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.21 Total: 9.53 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.31 Total: -19.38 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.27 Total: -79.44 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.02 Total: -27.78 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.74 Total: -3.10 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -77.45 3.86 -73.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352407774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.292 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds