Wall clock time and date at job start Tue Mar 31 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42905 * 113.99698 * 2 1 4 4 H 1.08999 * 109.46884 * 30.00236 * 3 2 1 5 5 C 1.52995 * 109.46966 * 150.00091 * 3 2 1 6 6 N 1.46510 * 109.47005 * 300.00124 * 5 3 2 7 7 C 1.34776 * 119.99751 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00102 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47391 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47391 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99512 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00128 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00234 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00152 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47097 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46978 * 119.99826 * 15 13 11 18 18 H 1.48497 * 109.46820 * 239.99972 * 15 13 11 19 19 C 1.50698 * 109.47208 * 270.00166 * 3 2 1 20 20 C 1.38244 * 119.97167 * 144.99943 * 19 3 2 21 21 C 1.38205 * 120.02298 * 180.02562 * 20 19 3 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 H 1.09005 * 109.46707 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46847 * 299.99642 * 1 2 3 28 28 H 1.08999 * 109.46802 * 60.00130 * 1 2 3 29 29 H 1.09005 * 109.47228 * 59.99879 * 5 3 2 30 30 H 1.09002 * 109.47314 * 180.02562 * 5 3 2 31 31 H 0.96994 * 119.99903 * 0.02562 * 6 5 3 32 32 H 1.08999 * 109.47255 * 300.00075 * 9 7 6 33 33 H 1.09001 * 109.47116 * 59.99694 * 9 7 6 34 34 H 1.08999 * 109.47393 * 300.00493 * 10 9 7 35 35 H 1.09001 * 109.46830 * 60.00021 * 10 9 7 36 36 H 0.96999 * 120.00383 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.98898 * 0.02589 * 20 19 3 38 38 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 40 40 H 1.08000 * 119.98525 * 179.74601 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3589 1.2634 0.7212 6 7 3.1603 0.8171 2.1025 7 6 4.2161 0.7040 2.9325 8 8 5.3307 0.9710 2.5358 9 6 4.0118 0.2456 4.3534 10 6 5.3604 0.2033 5.0747 11 6 5.1560 -0.2545 6.4958 12 1 4.1634 -0.4920 6.8491 13 6 6.2360 -0.3702 7.3449 14 7 7.4448 -0.0815 6.9145 15 14 5.9828 -0.9384 9.1063 16 1 4.5395 -1.1986 9.3398 17 1 6.7551 -2.1850 9.3402 18 1 6.4522 0.1173 10.0392 19 6 2.2145 1.7645 -1.4208 20 6 2.0568 3.0991 -1.7449 21 6 2.2433 3.5211 -3.0476 22 6 2.5835 2.6058 -4.0293 23 9 2.7606 3.0162 -5.3042 24 6 2.7468 1.2702 -3.7023 25 6 2.5593 0.8505 -2.3991 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0242 0.5694 0.2074 30 1 3.8021 2.2592 0.7216 31 1 2.2690 0.6032 2.4196 32 1 3.3463 0.9395 4.8670 33 1 3.5686 -0.7503 4.3538 34 1 6.0256 -0.4909 4.5610 35 1 5.8040 1.1989 5.0743 36 1 8.2047 -0.1633 7.5118 37 1 1.7876 3.8122 -0.9798 38 1 2.1196 4.5637 -3.3007 39 1 3.0162 0.5561 -4.4664 40 1 2.6827 -0.1918 -2.1446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360315559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:50 Heat of formation + Delta-G solvation = -116.201907 kcal Electronic energy + Delta-G solvation = -22587.200688 eV Core-core repulsion = 18895.089478 eV Total energy + Delta-G solvation = -3692.111210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22154 -40.16287 -38.96517 -37.81414 -34.51149 -33.41793 -32.09726 -31.49968 -30.91677 -28.51337 -26.69307 -25.52340 -23.68182 -23.36120 -21.55259 -21.31086 -19.61398 -18.06217 -17.34814 -17.00221 -16.79342 -16.06542 -15.96457 -15.86097 -15.37016 -15.02985 -14.91568 -14.62136 -14.36838 -13.98106 -13.87632 -13.52164 -13.26497 -13.06551 -12.73919 -12.31167 -12.12039 -11.97939 -11.86849 -11.53952 -11.17809 -11.12856 -10.92980 -10.56790 -10.14606 -9.93324 -9.64269 -9.47766 -9.17623 -9.04959 -8.90335 -8.76691 -8.30408 -5.94357 -3.98601 0.70367 0.86940 3.12808 3.28028 3.33642 3.36345 3.40459 3.43682 3.54919 3.90287 4.35085 4.37455 4.49485 4.52638 4.69948 4.73632 4.91698 5.03582 5.07093 5.08649 5.38185 5.40608 5.51853 5.52443 5.58733 5.59988 5.74798 5.85617 5.91824 6.04830 6.25918 6.28122 6.49766 6.70384 6.81130 6.92609 7.76915 7.89200 7.91505 8.09644 8.40991 8.81422 9.10464 9.64872 11.16665 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.002445 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.032307 B =11449.355027 C =11972.580620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.122 3.878 4 H 0.079 0.921 5 C 0.129 3.871 6 N -0.739 5.739 7 C 0.510 3.490 8 O -0.535 6.535 9 C -0.129 4.129 10 C 0.036 3.964 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.156 4.156 22 C 0.100 3.900 23 F -0.141 7.141 24 C -0.156 4.156 25 C -0.061 4.061 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.398 0.602 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 4.690 -20.852 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.063 3.937 4 H 0.097 0.903 5 C 0.004 3.996 6 N -0.394 5.394 7 C 0.299 3.701 8 O -0.411 6.411 9 C -0.169 4.169 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.174 4.174 22 C 0.081 3.919 23 F -0.119 7.119 24 C -0.175 4.175 25 C -0.079 4.079 26 H 0.107 0.893 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.284 4.739 -21.130 27.094 hybrid contribution -0.682 -0.063 0.716 0.991 sum -16.966 4.675 -20.414 26.952 Atomic orbital electron populations 1.22856 0.80757 1.03112 1.00122 1.88009 1.19884 1.26343 1.94719 1.21208 0.95549 0.85657 0.91240 0.90316 1.21316 0.94313 1.01232 0.82716 1.46066 1.10957 1.71101 1.11266 1.21559 0.83803 0.76212 0.88576 1.90674 1.24110 1.48747 1.77526 1.21853 1.04282 1.01195 0.89567 1.18906 0.89173 0.98418 0.93648 1.21264 0.93515 1.45341 0.96272 0.92557 1.25032 0.95249 0.95561 0.98621 1.70009 0.98556 1.48605 1.35690 0.86538 0.78150 0.78344 0.84937 1.19765 1.21026 1.21047 1.20316 1.02099 0.93880 0.96165 1.20907 0.97873 0.95173 0.95724 1.21114 1.03538 0.99991 0.92807 1.17799 1.01697 0.93363 0.79073 1.91505 1.92903 1.91054 1.36480 1.21205 1.03774 0.94327 0.98170 1.20924 0.95249 1.00630 0.91074 0.89301 0.93646 0.94034 0.90811 0.90273 0.76812 0.90308 0.90206 0.95799 0.95831 0.93020 0.84769 0.84572 0.84566 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.81 101.05 1.09 1.28 16 2 O -0.37 -3.48 9.24 -35.23 -0.33 -3.80 16 3 C 0.12 1.08 2.40 -27.89 -0.07 1.02 16 4 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 5 C 0.13 1.58 5.35 -4.04 -0.02 1.55 16 6 N -0.74 -10.31 5.45 -60.29 -0.33 -10.64 16 7 C 0.51 9.84 7.83 -10.99 -0.09 9.76 16 8 O -0.54 -12.74 15.98 5.56 0.09 -12.65 16 9 C -0.13 -2.62 5.64 -27.89 -0.16 -2.78 16 10 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 11 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C -0.12 -1.07 4.96 -104.62 -0.52 -1.59 16 20 C -0.08 -0.60 9.68 -39.59 -0.38 -0.99 16 21 C -0.16 -1.25 10.03 -39.51 -0.40 -1.65 16 22 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 23 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 24 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 25 C -0.06 -0.54 9.35 -39.59 -0.37 -0.91 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.40 4.44 8.35 -40.82 -0.34 4.10 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.14 1.20 7.63 -52.49 -0.40 0.80 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -34.90 351.31 -7.39 -42.29 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.75 Total: -0.68 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.12 Total: -8.28 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.41 Total: -37.50 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.24 Total: -16.45 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.90 -7.39 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.912 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds