Wall clock time and date at job start Tue Mar 31 2020 07:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42905 * 113.99698 * 2 1 4 4 H 1.08999 * 109.46884 * 30.00236 * 3 2 1 5 5 C 1.52995 * 109.46966 * 150.00091 * 3 2 1 6 6 N 1.46510 * 109.47005 * 300.00124 * 5 3 2 7 7 C 1.34776 * 119.99751 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00102 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47391 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47391 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99512 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00128 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00234 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00152 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47097 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46978 * 119.99826 * 15 13 11 18 18 H 1.48497 * 109.46820 * 239.99972 * 15 13 11 19 19 C 1.50698 * 109.47208 * 270.00166 * 3 2 1 20 20 C 1.38244 * 119.97167 * 144.99943 * 19 3 2 21 21 C 1.38205 * 120.02298 * 180.02562 * 20 19 3 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 H 1.09005 * 109.46707 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46847 * 299.99642 * 1 2 3 28 28 H 1.08999 * 109.46802 * 60.00130 * 1 2 3 29 29 H 1.09005 * 109.47228 * 59.99879 * 5 3 2 30 30 H 1.09002 * 109.47314 * 180.02562 * 5 3 2 31 31 H 0.96994 * 119.99903 * 0.02562 * 6 5 3 32 32 H 1.08999 * 109.47255 * 300.00075 * 9 7 6 33 33 H 1.09001 * 109.47116 * 59.99694 * 9 7 6 34 34 H 1.08999 * 109.47393 * 300.00493 * 10 9 7 35 35 H 1.09001 * 109.46830 * 60.00021 * 10 9 7 36 36 H 0.96999 * 120.00383 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.98898 * 0.02589 * 20 19 3 38 38 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 40 40 H 1.08000 * 119.98525 * 179.74601 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 3.3589 1.2634 0.7212 6 7 3.1603 0.8171 2.1025 7 6 4.2161 0.7040 2.9325 8 8 5.3307 0.9710 2.5358 9 6 4.0118 0.2456 4.3534 10 6 5.3604 0.2033 5.0747 11 6 5.1560 -0.2545 6.4958 12 1 4.1634 -0.4920 6.8491 13 6 6.2360 -0.3702 7.3449 14 7 7.4448 -0.0815 6.9145 15 14 5.9828 -0.9384 9.1063 16 1 4.5395 -1.1986 9.3398 17 1 6.7551 -2.1850 9.3402 18 1 6.4522 0.1173 10.0392 19 6 2.2145 1.7645 -1.4208 20 6 2.0568 3.0991 -1.7449 21 6 2.2433 3.5211 -3.0476 22 6 2.5835 2.6058 -4.0293 23 9 2.7606 3.0162 -5.3042 24 6 2.7468 1.2702 -3.7023 25 6 2.5593 0.8505 -2.3991 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.0242 0.5694 0.2074 30 1 3.8021 2.2592 0.7216 31 1 2.2690 0.6032 2.4196 32 1 3.3463 0.9395 4.8670 33 1 3.5686 -0.7503 4.3538 34 1 6.0256 -0.4909 4.5610 35 1 5.8040 1.1989 5.0743 36 1 8.2047 -0.1633 7.5118 37 1 1.7876 3.8122 -0.9798 38 1 2.1196 4.5637 -3.3007 39 1 3.0162 0.5561 -4.4664 40 1 2.6827 -0.1918 -2.1446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360315559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:49 Heat of formation + Delta-G solvation = -139.596186 kcal Electronic energy + Delta-G solvation = -22588.215141 eV Core-core repulsion = 18895.089478 eV Total energy + Delta-G solvation = -3693.125662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.94332 -41.02454 -40.27189 -38.53541 -35.79797 -35.46379 -33.21987 -32.60456 -32.11744 -29.51392 -27.74797 -26.92679 -24.74501 -24.01489 -23.23882 -22.15352 -21.11439 -18.84924 -18.70234 -18.03412 -17.67625 -17.53353 -16.84904 -16.67900 -16.61428 -16.37147 -16.29637 -15.67276 -15.45807 -14.79326 -14.64263 -14.49380 -14.41172 -14.19589 -14.14002 -13.63481 -13.44485 -13.20777 -12.87842 -12.82392 -12.50982 -12.42137 -12.21228 -11.89622 -11.83100 -11.61206 -11.26241 -10.86552 -10.63889 -10.56304 -10.11827 -10.04387 -9.65909 -8.16332 -6.30187 0.03349 0.24775 1.43562 1.45032 1.58292 1.75178 2.21927 2.45161 2.57256 2.69334 3.16795 3.24706 3.65514 3.74691 3.90541 3.95623 4.04878 4.14753 4.32969 4.38809 4.53664 4.54560 4.59110 4.62207 4.64493 4.83377 4.93235 4.95578 4.96604 5.12253 5.12642 5.22560 5.41177 5.46189 5.54061 5.66356 5.86619 5.88139 6.19301 6.19986 6.63765 6.88957 7.37732 7.40484 8.96634 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.002445 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.032307 B =11449.355027 C =11972.580620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.135 3.865 4 H 0.106 0.894 5 C 0.126 3.874 6 N -0.712 5.712 7 C 0.511 3.489 8 O -0.591 6.591 9 C -0.118 4.118 10 C 0.040 3.960 11 C -0.540 4.540 12 H 0.077 0.923 13 C -0.009 4.009 14 N -0.939 5.939 15 Si 0.974 3.026 16 H -0.252 1.252 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.130 4.130 20 C -0.076 4.076 21 C -0.157 4.157 22 C 0.082 3.918 23 F -0.149 7.149 24 C -0.162 4.162 25 C -0.070 4.070 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.417 0.583 32 H 0.107 0.893 33 H 0.103 0.897 34 H -0.020 1.020 35 H -0.017 1.017 36 H 0.262 0.738 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.398 4.814 -19.981 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.309 6.309 3 C 0.076 3.924 4 H 0.124 0.876 5 C 0.002 3.998 6 N -0.365 5.365 7 C 0.300 3.700 8 O -0.471 6.471 9 C -0.158 4.158 10 C 0.003 3.997 11 C -0.578 4.578 12 H 0.095 0.905 13 C -0.206 4.206 14 N -0.579 5.579 15 Si 0.798 3.202 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.131 4.131 20 C -0.094 4.094 21 C -0.175 4.175 22 C 0.063 3.937 23 F -0.128 7.128 24 C -0.181 4.181 25 C -0.088 4.088 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.254 0.746 32 H 0.125 0.875 33 H 0.121 0.879 34 H -0.001 1.001 35 H 0.001 0.999 36 H 0.071 0.929 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.348 4.856 -20.282 28.448 hybrid contribution 0.221 -0.102 0.361 0.435 sum -19.128 4.754 -19.920 28.023 Atomic orbital electron populations 1.23025 0.79134 1.03970 1.01137 1.87985 1.21638 1.26499 1.94823 1.21043 0.93926 0.86299 0.91109 0.87630 1.21420 0.96448 1.00425 0.81460 1.45729 1.10460 1.68978 1.11380 1.21332 0.83980 0.75933 0.88793 1.90661 1.26492 1.51553 1.78383 1.21624 1.00712 1.03468 0.89990 1.18704 0.91986 0.94803 0.94225 1.21756 0.94466 1.44800 0.96800 0.90494 1.26154 0.94793 0.95545 1.04133 1.70188 0.99829 1.50091 1.37802 0.85266 0.79144 0.77611 0.78169 1.17503 1.20747 1.20649 1.20379 1.02406 0.94393 0.95907 1.21180 0.96953 0.95118 0.96137 1.21375 1.02741 1.00735 0.92692 1.18052 1.02617 0.93941 0.79106 1.91481 1.93094 1.91138 1.37080 1.21343 1.03699 0.94562 0.98468 1.20989 0.95672 1.00793 0.91356 0.88651 0.92110 0.93480 0.92866 0.90411 0.74635 0.87481 0.87892 1.00107 0.99851 0.92900 0.82273 0.82810 0.83644 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.81 113.37 1.23 1.46 16 2 O -0.39 -6.45 9.24 -148.98 -1.38 -7.82 16 3 C 0.13 2.08 2.40 29.85 0.07 2.15 16 4 H 0.11 1.09 7.70 -2.39 -0.02 1.07 16 5 C 0.13 2.96 5.35 86.38 0.46 3.42 16 6 N -0.71 -18.64 5.45 -463.04 -2.52 -21.16 16 7 C 0.51 19.64 7.83 87.66 0.69 20.33 16 8 O -0.59 -29.19 15.98 -3.03 -0.05 -29.24 16 9 C -0.12 -4.70 5.64 29.85 0.17 -4.53 16 10 C 0.04 2.26 4.26 29.85 0.13 2.39 16 11 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 12 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 13 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 14 N -0.94 -59.92 13.29 21.44 0.28 -59.63 16 15 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 16 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 C -0.13 -2.03 4.96 -19.86 -0.10 -2.13 16 20 C -0.08 -0.99 9.68 22.26 0.22 -0.77 16 21 C -0.16 -2.25 10.03 22.31 0.22 -2.03 16 22 C 0.08 1.45 7.30 22.38 0.16 1.61 16 23 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 24 C -0.16 -2.73 10.03 22.31 0.22 -2.50 16 25 C -0.07 -1.19 9.35 22.26 0.21 -0.98 16 26 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.44 8.08 -2.39 -0.02 0.42 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 7.96 8.35 -92.71 -0.77 7.18 16 32 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 34 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 35 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.14 2.34 7.63 -2.91 -0.02 2.32 16 Total: -1.00 -79.07 351.31 3.78 -75.29 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.27 Total: 10.55 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 4.37 Total: -12.15 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.24 Total: -80.79 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.42 Total: -37.06 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -79.07 3.78 -75.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360315559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.306 kcal (2) G-P(sol) polarization free energy of solvation -79.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds