Wall clock time and date at job start Tue Mar 31 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35951 * 116.99961 * 2 1 4 4 C 1.38656 * 120.06493 * 0.02562 * 3 2 1 5 5 C 1.38187 * 119.97373 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.09024 * 0.02562 * 5 4 3 7 7 C 1.38258 * 120.13273 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.99028 * 179.97438 * 7 6 5 9 9 N 1.46506 * 109.54422 * 0.02562 * 8 7 6 10 10 C 1.36938 * 119.99589 * 59.81928 * 9 8 7 11 11 H 1.07999 * 120.00325 * 0.02562 * 10 9 8 12 12 C 1.38815 * 119.99821 * 180.02562 * 10 9 8 13 13 N 1.31611 * 120.00115 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99923 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47028 * 89.99910 * 14 12 10 16 16 H 1.48496 * 109.47221 * 210.00542 * 14 12 10 17 17 H 1.48498 * 109.47131 * 330.00163 * 14 12 10 18 18 C 1.53182 * 109.61709 * 120.22231 * 8 7 6 19 19 C 1.53087 * 109.16382 * 176.89343 * 18 8 7 20 20 O 1.42907 * 109.41634 * 302.39403 * 19 18 8 21 21 C 1.42902 * 114.09860 * 61.15505 * 20 19 18 22 22 C 1.53087 * 109.41539 * 298.84420 * 21 20 19 23 23 C 1.38340 * 120.02353 * 0.27656 * 7 6 5 24 24 F 1.35098 * 120.04324 * 179.72645 * 23 7 6 25 25 H 1.08995 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46856 * 299.99886 * 1 2 3 27 27 H 1.09003 * 109.47093 * 59.99518 * 1 2 3 28 28 H 1.08006 * 120.01482 * 0.03932 * 4 3 2 29 29 H 1.07998 * 119.95374 * 180.02562 * 5 4 3 30 30 H 1.08010 * 119.93591 * 179.97438 * 6 5 4 31 31 H 0.96999 * 120.00080 * 239.82438 * 9 8 7 32 32 H 0.97000 * 120.00334 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.52241 * 296.79743 * 18 8 7 34 34 H 1.08999 * 109.51893 * 56.98949 * 18 8 7 35 35 H 1.08998 * 109.48258 * 182.41151 * 19 18 8 36 36 H 1.08998 * 109.49170 * 62.38122 * 19 18 8 37 37 H 1.09001 * 109.47592 * 178.86297 * 21 20 19 38 38 H 1.08996 * 109.48503 * 58.83450 * 21 20 19 39 39 H 1.08993 * 109.52332 * 297.70458 * 22 21 20 40 40 H 1.09003 * 109.57045 * 177.54388 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3750 0.0005 5 6 1.9217 3.6053 0.0000 6 6 3.3024 3.6777 -0.0016 7 6 4.0580 2.5199 -0.0021 8 6 5.5627 2.6025 -0.0045 9 7 5.9764 4.0079 -0.0052 10 6 5.5993 4.8331 1.0205 11 1 4.9974 4.4478 1.8302 12 6 5.9909 6.1649 1.0195 13 7 5.6289 6.9579 2.0056 14 14 7.0326 6.8312 -0.3806 15 1 6.1465 7.3488 -1.4540 16 1 7.8943 7.9306 0.1233 17 1 7.8852 5.7436 -0.9241 18 6 6.1179 1.9061 1.2418 19 6 7.6477 1.9280 1.1902 20 8 8.0917 1.2915 -0.0098 21 6 7.6423 1.9273 -1.2081 22 6 6.1123 1.9054 -1.2528 23 6 3.4333 1.2856 -0.0069 24 9 4.1714 0.1540 -0.0130 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2137 2.3200 0.0016 29 1 1.3342 4.5115 0.0008 30 1 3.7916 4.6406 -0.0024 31 1 6.5173 4.3539 -0.7323 32 1 5.9022 7.8886 2.0048 33 1 5.7761 2.4299 2.1344 34 1 5.7691 0.8738 1.2680 35 1 8.0482 1.3962 2.0532 36 1 7.9974 2.9603 1.2049 37 1 8.0389 1.3950 -2.0727 38 1 7.9918 2.9596 -1.2251 39 1 5.7633 0.8731 -1.2769 40 1 5.7655 2.4281 -2.1443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447370136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:32 Heat of formation + Delta-G solvation = -76.559603 kcal Electronic energy + Delta-G solvation = -25366.706908 eV Core-core repulsion = 21676.314717 eV Total energy + Delta-G solvation = -3690.392191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.41138 -39.91811 -39.16214 -37.17694 -35.06848 -32.54138 -30.65917 -30.30279 -29.56826 -29.49759 -27.14070 -24.78008 -23.34368 -22.86972 -22.08879 -21.20083 -18.91241 -17.95013 -17.70730 -16.64645 -16.29643 -15.96359 -15.61312 -15.47026 -14.72111 -14.66509 -14.51778 -14.37192 -14.26165 -13.87769 -13.33330 -13.23199 -12.64881 -12.57245 -12.13765 -12.06242 -11.88253 -11.82023 -11.24903 -11.12186 -10.93708 -10.93309 -10.75764 -10.72353 -10.33146 -10.08478 -9.78442 -9.67910 -9.16641 -8.89355 -8.24314 -7.77560 -7.45670 -5.91396 -3.28516 1.54562 1.76058 3.26671 3.30495 3.31647 3.37756 4.04569 4.34975 4.45612 4.62073 4.93606 5.01017 5.11356 5.16807 5.25731 5.31665 5.34978 5.38767 5.47262 5.53192 5.60131 5.72497 5.82064 5.91031 5.99188 6.07917 6.18401 6.19647 6.33965 6.41069 6.49625 6.57476 6.69397 6.78244 6.96384 7.10670 7.25482 7.62052 7.68496 7.86772 8.27256 9.04637 9.76056 9.96339 11.25208 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.006865 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.560901 B = 4077.608081 C = 5321.690209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.073 3.927 4 C -0.192 4.192 5 C -0.103 4.103 6 C -0.092 4.092 7 C -0.077 4.077 8 C 0.249 3.751 9 N -0.739 5.739 10 C -0.248 4.248 11 H 0.096 0.904 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.877 3.123 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.276 1.276 18 C -0.156 4.156 19 C 0.070 3.930 20 O -0.390 6.390 21 C 0.068 3.932 22 C -0.159 4.159 23 C 0.065 3.935 24 F -0.134 7.134 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.176 0.824 31 H 0.365 0.635 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -10.422 -5.785 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.028 3.972 4 C -0.211 4.211 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.081 4.081 8 C 0.158 3.842 9 N -0.382 5.382 10 C -0.377 4.377 11 H 0.114 0.886 12 C -0.184 4.184 13 N -0.570 5.570 14 Si 0.707 3.293 15 H -0.209 1.209 16 H -0.217 1.217 17 H -0.202 1.202 18 C -0.196 4.196 19 C -0.006 4.006 20 O -0.309 6.309 21 C -0.009 4.009 22 C -0.197 4.197 23 C 0.045 3.955 24 F -0.113 7.113 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.193 0.807 31 H 0.199 0.801 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.169 -10.686 -5.562 13.534 hybrid contribution 0.162 0.861 -0.810 1.193 sum -6.007 -9.825 -6.372 13.161 Atomic orbital electron populations 1.22993 0.78825 1.03486 1.01214 1.86084 1.20990 1.26436 1.89540 1.18863 0.90690 0.85157 1.02491 1.21030 0.99442 0.91904 1.08726 1.21124 0.95307 0.96554 0.99197 1.21946 0.92398 1.01045 0.95585 1.20678 0.98246 0.90309 0.98818 1.18280 0.86929 0.85600 0.93438 1.42889 1.63180 1.05281 1.26849 1.18956 1.27788 0.90291 1.00636 0.88589 1.24643 1.00003 0.96240 0.97481 1.69685 1.49458 1.05878 1.31970 0.86684 0.80932 0.78831 0.82872 1.20908 1.21673 1.20241 1.22565 0.96589 1.00423 1.00017 1.22474 0.93824 0.98218 0.86129 1.87817 1.74118 1.54876 1.14091 1.22444 0.93187 0.97723 0.87591 1.22475 0.96972 1.02068 0.98159 1.16879 0.85527 0.82664 1.10430 1.91399 1.76300 1.49272 1.94336 0.88566 0.92775 0.92871 0.85577 0.85682 0.80724 0.80084 0.92836 0.90201 0.91548 0.89971 0.91726 0.89668 0.93041 0.89895 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.82 10.36 -19.59 -0.20 -5.02 16 3 C 0.07 1.22 6.69 -39.18 -0.26 0.96 16 4 C -0.19 -2.88 9.04 -39.45 -0.36 -3.23 16 5 C -0.10 -1.69 10.04 -39.59 -0.40 -2.09 16 6 C -0.09 -1.76 8.41 -39.57 -0.33 -2.09 16 7 C -0.08 -1.46 4.68 -104.58 -0.49 -1.95 16 8 C 0.25 4.74 0.49 -132.79 -0.06 4.67 16 9 N -0.74 -15.71 3.57 -48.13 -0.17 -15.88 16 10 C -0.25 -6.13 6.64 -15.06 -0.10 -6.23 16 11 H 0.10 2.61 7.08 -52.49 -0.37 2.24 16 12 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 13 N -0.92 -26.72 13.97 55.49 0.78 -25.94 16 14 Si 0.88 20.42 27.74 -169.99 -4.71 15.70 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.08 6.52 56.52 0.37 -5.72 16 18 C -0.16 -2.96 4.65 -26.59 -0.12 -3.08 16 19 C 0.07 1.26 6.68 37.20 0.25 1.51 16 20 O -0.39 -7.01 10.77 -35.23 -0.38 -7.39 16 21 C 0.07 1.10 6.67 37.20 0.25 1.35 16 22 C -0.16 -2.67 4.79 -26.59 -0.13 -2.79 16 23 C 0.07 1.19 6.78 -39.30 -0.27 0.93 16 24 F -0.13 -2.49 13.17 2.25 0.03 -2.46 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.18 3.79 5.14 -52.48 -0.27 3.52 16 31 H 0.37 7.73 4.58 -40.82 -0.19 7.54 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.08 1.64 7.21 -51.93 -0.37 1.26 16 34 H 0.07 1.23 6.25 -51.93 -0.32 0.91 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.28 7.75 -51.93 -0.40 0.88 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.88 7.09 -51.93 -0.37 0.51 16 39 H 0.08 1.39 6.20 -51.93 -0.32 1.07 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -28.95 313.04 -6.10 -35.05 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.13 Total: -10.50 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.60 Total: -41.83 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.58 Total: -12.41 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.03 Total: -2.46 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.71 Total: 15.70 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.95 -6.10 -35.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447370136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.509 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds