Wall clock time and date at job start Tue Mar 31 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35951 * 116.99961 * 2 1 4 4 C 1.38656 * 120.06493 * 0.02562 * 3 2 1 5 5 C 1.38187 * 119.97373 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.09024 * 0.02562 * 5 4 3 7 7 C 1.38258 * 120.13273 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.99028 * 179.97438 * 7 6 5 9 9 N 1.46506 * 109.54422 * 0.02562 * 8 7 6 10 10 C 1.36938 * 119.99589 * 59.81928 * 9 8 7 11 11 H 1.07999 * 120.00325 * 0.02562 * 10 9 8 12 12 C 1.38815 * 119.99821 * 180.02562 * 10 9 8 13 13 N 1.31611 * 120.00115 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99923 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47028 * 89.99910 * 14 12 10 16 16 H 1.48496 * 109.47221 * 210.00542 * 14 12 10 17 17 H 1.48498 * 109.47131 * 330.00163 * 14 12 10 18 18 C 1.53182 * 109.61709 * 120.22231 * 8 7 6 19 19 C 1.53087 * 109.16382 * 176.89343 * 18 8 7 20 20 O 1.42907 * 109.41634 * 302.39403 * 19 18 8 21 21 C 1.42902 * 114.09860 * 61.15505 * 20 19 18 22 22 C 1.53087 * 109.41539 * 298.84420 * 21 20 19 23 23 C 1.38340 * 120.02353 * 0.27656 * 7 6 5 24 24 F 1.35098 * 120.04324 * 179.72645 * 23 7 6 25 25 H 1.08995 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46856 * 299.99886 * 1 2 3 27 27 H 1.09003 * 109.47093 * 59.99518 * 1 2 3 28 28 H 1.08006 * 120.01482 * 0.03932 * 4 3 2 29 29 H 1.07998 * 119.95374 * 180.02562 * 5 4 3 30 30 H 1.08010 * 119.93591 * 179.97438 * 6 5 4 31 31 H 0.96999 * 120.00080 * 239.82438 * 9 8 7 32 32 H 0.97000 * 120.00334 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.52241 * 296.79743 * 18 8 7 34 34 H 1.08999 * 109.51893 * 56.98949 * 18 8 7 35 35 H 1.08998 * 109.48258 * 182.41151 * 19 18 8 36 36 H 1.08998 * 109.49170 * 62.38122 * 19 18 8 37 37 H 1.09001 * 109.47592 * 178.86297 * 21 20 19 38 38 H 1.08996 * 109.48503 * 58.83450 * 21 20 19 39 39 H 1.08993 * 109.52332 * 297.70458 * 22 21 20 40 40 H 1.09003 * 109.57045 * 177.54388 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3750 0.0005 5 6 1.9217 3.6053 0.0000 6 6 3.3024 3.6777 -0.0016 7 6 4.0580 2.5199 -0.0021 8 6 5.5627 2.6025 -0.0045 9 7 5.9764 4.0079 -0.0052 10 6 5.5993 4.8331 1.0205 11 1 4.9974 4.4478 1.8302 12 6 5.9909 6.1649 1.0195 13 7 5.6289 6.9579 2.0056 14 14 7.0326 6.8312 -0.3806 15 1 6.1465 7.3488 -1.4540 16 1 7.8943 7.9306 0.1233 17 1 7.8852 5.7436 -0.9241 18 6 6.1179 1.9061 1.2418 19 6 7.6477 1.9280 1.1902 20 8 8.0917 1.2915 -0.0098 21 6 7.6423 1.9273 -1.2081 22 6 6.1123 1.9054 -1.2528 23 6 3.4333 1.2856 -0.0069 24 9 4.1714 0.1540 -0.0130 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2137 2.3200 0.0016 29 1 1.3342 4.5115 0.0008 30 1 3.7916 4.6406 -0.0024 31 1 6.5173 4.3539 -0.7323 32 1 5.9022 7.8886 2.0048 33 1 5.7761 2.4299 2.1344 34 1 5.7691 0.8738 1.2680 35 1 8.0482 1.3962 2.0532 36 1 7.9974 2.9603 1.2049 37 1 8.0389 1.3950 -2.0727 38 1 7.9918 2.9596 -1.2251 39 1 5.7633 0.8731 -1.2769 40 1 5.7655 2.4281 -2.1443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447370136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:32 Heat of formation + Delta-G solvation = -94.981847 kcal Electronic energy + Delta-G solvation = -25367.505756 eV Core-core repulsion = 21676.314717 eV Total energy + Delta-G solvation = -3691.191039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.81497 -41.29005 -40.46544 -38.48922 -36.61217 -34.36744 -32.09292 -31.97776 -31.00579 -30.80960 -28.11236 -26.34742 -24.95881 -24.43015 -23.44534 -22.51165 -20.41524 -19.82614 -19.02176 -17.95958 -17.68841 -17.22198 -16.95440 -16.76122 -16.49275 -16.06095 -15.92880 -15.78380 -15.52748 -15.31269 -14.98781 -14.67337 -14.30857 -13.93268 -13.70940 -13.32993 -13.16435 -13.09511 -12.86455 -12.75317 -12.44959 -12.21225 -12.15295 -12.09459 -11.92993 -11.68153 -11.54366 -11.22781 -10.96966 -10.43691 -9.63778 -9.32584 -9.09161 -7.96516 -5.30867 0.20297 0.40981 1.41211 1.41595 1.48865 2.23587 2.50741 2.68605 2.98095 3.29750 3.31820 3.47883 3.71888 3.86702 3.98185 4.04444 4.11974 4.17000 4.36597 4.38785 4.41440 4.49187 4.50192 4.66956 4.70885 4.72192 4.75800 4.80824 4.96358 5.06354 5.11502 5.17985 5.19165 5.24568 5.58095 5.69499 5.83170 5.89081 6.25265 6.27576 6.39277 7.09580 7.81557 8.03789 9.23552 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.006865 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.560901 B = 4077.608081 C = 5321.690209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.079 3.921 4 C -0.180 4.180 5 C -0.098 4.098 6 C -0.119 4.119 7 C -0.088 4.088 8 C 0.242 3.758 9 N -0.736 5.736 10 C -0.205 4.205 11 H 0.064 0.936 12 C -0.050 4.050 13 N -0.976 5.976 14 Si 0.936 3.064 15 H -0.279 1.279 16 H -0.304 1.304 17 H -0.255 1.255 18 C -0.151 4.151 19 C 0.074 3.926 20 O -0.394 6.394 21 C 0.064 3.936 22 C -0.152 4.152 23 C 0.046 3.954 24 F -0.139 7.139 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.368 0.632 32 H 0.256 0.744 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -12.207 -7.545 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.033 3.967 4 C -0.198 4.198 5 C -0.117 4.117 6 C -0.137 4.137 7 C -0.091 4.091 8 C 0.152 3.848 9 N -0.379 5.379 10 C -0.336 4.336 11 H 0.082 0.918 12 C -0.242 4.242 13 N -0.626 5.626 14 Si 0.764 3.236 15 H -0.205 1.205 16 H -0.231 1.231 17 H -0.180 1.180 18 C -0.190 4.190 19 C -0.002 4.002 20 O -0.313 6.313 21 C -0.013 4.013 22 C -0.190 4.190 23 C 0.026 3.974 24 F -0.118 7.118 25 H 0.139 0.861 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.203 0.797 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.062 0.938 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.240 -12.535 -7.360 16.239 hybrid contribution 0.305 1.237 -0.246 1.298 sum -6.935 -11.298 -7.606 15.283 Atomic orbital electron populations 1.23405 0.75936 1.05763 1.02567 1.86079 1.23943 1.25652 1.89101 1.18985 0.90307 0.86378 1.01046 1.21358 1.01259 0.90460 1.06764 1.21339 0.94237 0.98238 0.97838 1.21669 0.93964 0.99663 0.98433 1.20537 0.97971 0.90831 0.99793 1.18483 0.87487 0.84215 0.94658 1.42802 1.63049 1.06096 1.25917 1.18703 1.24912 0.90236 0.99719 0.91834 1.25228 1.02286 0.96724 0.99928 1.69843 1.52233 1.05951 1.34581 0.85709 0.79478 0.78208 0.80162 1.20525 1.23101 1.17952 1.22487 0.97368 1.00233 0.98960 1.22409 0.93037 0.97475 0.87288 1.87820 1.74133 1.54951 1.14352 1.22643 0.92753 0.97886 0.88008 1.22444 0.97386 1.01935 0.97264 1.16947 0.86534 0.82148 1.11764 1.91374 1.76586 1.49331 1.94514 0.86090 0.91579 0.91194 0.81669 0.83667 0.83893 0.79747 0.93519 0.92715 0.91058 0.88065 0.93767 0.86308 0.93789 0.89581 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -9.22 10.36 -93.00 -0.96 -10.19 16 3 C 0.08 2.45 6.69 22.53 0.15 2.60 16 4 C -0.18 -4.86 9.04 22.36 0.20 -4.66 16 5 C -0.10 -3.07 10.04 22.26 0.22 -2.85 16 6 C -0.12 -4.60 8.41 22.28 0.19 -4.41 16 7 C -0.09 -3.35 4.68 -19.84 -0.09 -3.44 16 8 C 0.24 9.17 0.49 2.97 0.00 9.18 16 9 N -0.74 -31.50 3.57 -306.19 -1.09 -32.59 16 10 C -0.21 -10.50 6.64 84.03 0.56 -9.94 16 11 H 0.06 3.65 7.08 -2.91 -0.02 3.63 16 12 C -0.05 -2.70 5.50 84.86 0.47 -2.23 16 13 N -0.98 -58.85 13.97 21.65 0.30 -58.55 16 14 Si 0.94 42.82 27.74 68.60 1.90 44.72 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 17 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 18 C -0.15 -5.76 4.65 30.68 0.14 -5.62 16 19 C 0.07 2.66 6.68 72.01 0.48 3.14 16 20 O -0.39 -13.47 10.77 -148.98 -1.60 -15.07 16 21 C 0.06 1.93 6.67 72.01 0.48 2.41 16 22 C -0.15 -4.88 4.79 30.68 0.15 -4.74 16 23 C 0.05 1.65 6.78 22.46 0.15 1.80 16 24 F -0.14 -5.02 13.17 44.97 0.59 -4.43 16 25 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 27 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 28 H 0.17 3.12 6.30 -2.91 -0.02 3.10 16 29 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 30 H 0.14 6.43 5.14 -2.91 -0.01 6.42 16 31 H 0.37 15.32 4.58 -92.71 -0.42 14.90 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.05 2.33 7.21 -2.39 -0.02 2.32 16 34 H 0.07 2.64 6.25 -2.39 -0.01 2.62 16 35 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.04 1.75 7.75 -2.39 -0.02 1.74 16 37 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.04 1.41 7.09 -2.39 -0.02 1.39 16 39 H 0.09 2.74 6.20 -2.39 -0.01 2.72 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -64.54 313.04 3.94 -60.59 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.59 Total: 32.88 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 4.21 Total: -17.37 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -0.79 Total: -91.14 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -2.57 Total: -25.26 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.59 Total: -4.43 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.90 Total: 44.72 kcal Total: -64.54 3.94 -60.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447370136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.388 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds