Wall clock time and date at job start Tue Mar 31 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99800 * 2 1 4 4 C 1.52996 * 109.47207 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47209 * 64.99158 * 4 3 2 6 6 C 1.36936 * 120.00169 * 269.99902 * 5 4 3 7 7 H 1.08005 * 119.99285 * 141.45478 * 6 5 4 8 8 C 1.38807 * 120.00099 * 321.45971 * 6 5 4 9 9 N 1.31620 * 120.00183 * 338.83445 * 8 6 5 10 10 Si 1.86798 * 119.99851 * 158.84421 * 8 6 5 11 11 H 1.48501 * 109.47316 * 59.99457 * 10 8 6 12 12 H 1.48508 * 109.47209 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47110 * 299.99606 * 10 8 6 14 14 C 1.46505 * 119.99805 * 90.00367 * 5 4 3 15 15 C 1.53001 * 109.47120 * 264.71047 * 14 5 4 16 16 C 1.50696 * 109.46829 * 179.97438 * 15 14 5 17 17 O 1.21269 * 120.00618 * 359.97438 * 16 15 14 18 18 C 1.47024 * 119.99667 * 179.97438 * 16 15 14 19 19 C 1.39935 * 120.14201 * 359.72971 * 18 16 15 20 20 C 1.37749 * 119.84913 * 179.74071 * 19 18 16 21 21 C 1.38716 * 120.14366 * 0.53335 * 20 19 18 22 22 F 1.35107 * 119.85403 * 179.69623 * 21 20 19 23 23 C 1.38717 * 120.29523 * 359.71607 * 21 20 19 24 24 C 1.37742 * 120.14406 * 0.02688 * 23 21 20 25 25 H 1.08996 * 109.47092 * 60.00395 * 1 2 3 26 26 H 1.08999 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47527 * 300.00626 * 1 2 3 28 28 H 1.08998 * 109.47202 * 59.99104 * 3 2 1 29 29 H 1.09004 * 109.46767 * 299.99605 * 3 2 1 30 30 H 1.09000 * 109.46966 * 304.99769 * 4 3 2 31 31 H 1.08997 * 109.47439 * 184.99906 * 4 3 2 32 32 H 0.96994 * 119.99973 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47060 * 144.70530 * 14 5 4 34 34 H 1.09006 * 109.46912 * 24.70741 * 14 5 4 35 35 H 1.08997 * 109.46882 * 59.99665 * 15 14 5 36 36 H 1.09000 * 109.46472 * 300.00135 * 15 14 5 37 37 H 1.08002 * 120.07721 * 359.97438 * 19 18 16 38 38 H 1.08002 * 119.92961 * 180.24775 * 20 19 18 39 39 H 1.08003 * 119.92521 * 179.97438 * 23 21 20 40 40 H 1.08004 * 120.07136 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0980 -0.7975 -1.3342 7 1 3.8086 -1.3109 -2.2393 8 6 4.5926 -1.5176 -0.2556 9 7 5.3194 -0.9142 0.6610 10 14 4.2271 -3.3433 -0.1049 11 1 4.7677 -4.0559 -1.2903 12 1 4.8651 -3.8760 1.1258 13 1 2.7585 -3.5496 -0.0306 14 6 4.2884 1.3996 -2.4130 15 6 3.0610 1.4868 -3.3224 16 6 3.3814 2.3470 -4.5175 17 8 4.4827 2.8420 -4.6307 18 6 2.3588 2.5861 -5.5464 19 6 1.0889 2.0118 -5.4218 20 6 0.1336 2.2441 -6.3867 21 6 0.4318 3.0364 -7.4856 22 9 -0.5076 3.2554 -8.4316 23 6 1.6904 3.6044 -7.6178 24 6 2.6531 3.3843 -6.6575 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8507 0.5687 0.8427 31 1 3.9784 2.1766 0.0902 32 1 5.6647 -1.4173 1.4149 33 1 5.1189 0.9595 -2.9648 34 1 4.5641 2.3996 -2.0780 35 1 2.2305 1.9269 -2.7705 36 1 2.7853 0.4868 -3.6573 37 1 0.8570 1.3908 -4.5691 38 1 -0.8482 1.8048 -6.2897 39 1 1.9163 4.2199 -8.4761 40 1 3.6327 3.8268 -6.7618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459540403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:33 Heat of formation + Delta-G solvation = -79.823515 kcal Electronic energy + Delta-G solvation = -23538.288277 eV Core-core repulsion = 19847.754552 eV Total energy + Delta-G solvation = -3690.533725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.21613 -39.96111 -38.06525 -37.22212 -35.36775 -32.25222 -31.41568 -31.10030 -30.02558 -28.13897 -25.67632 -24.96220 -23.61506 -23.13574 -21.92724 -20.25892 -19.47128 -18.01728 -16.86831 -16.54204 -16.43176 -15.89889 -15.71006 -15.08965 -14.97334 -14.79548 -14.58318 -14.28247 -13.98219 -13.87594 -13.45593 -13.34588 -13.05699 -12.85380 -12.50499 -12.12814 -11.90114 -11.78422 -11.29386 -11.06278 -10.88641 -10.73001 -10.66056 -10.50973 -9.96668 -9.87440 -9.69950 -9.48760 -9.42751 -8.95995 -8.81306 -8.34199 -6.49829 -5.68695 -3.26511 0.41022 0.98170 2.38555 3.46525 3.51347 3.51467 3.56562 3.90966 4.11878 4.44309 4.58113 4.60450 4.66874 4.99037 4.99919 5.30015 5.44057 5.61284 5.63026 5.66108 5.70186 5.76403 5.77342 5.80416 5.86508 5.96430 6.03713 6.10637 6.18487 6.30144 6.42874 6.54863 6.58561 6.72141 6.76158 7.07944 7.65723 7.73469 7.91260 8.05936 8.62914 9.27213 9.90644 10.46682 11.33487 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.003811 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.869830 B = 7346.299215 C = 7774.283327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.045 3.955 4 C 0.142 3.858 5 N -0.575 5.575 6 C -0.246 4.246 7 H 0.055 0.945 8 C 0.021 3.979 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.157 3.843 15 C -0.184 4.184 16 C 0.397 3.603 17 O -0.452 6.452 18 C -0.173 4.173 19 C -0.041 4.041 20 C -0.167 4.167 21 C 0.120 3.880 22 F -0.138 7.138 23 C -0.169 4.169 24 C -0.038 4.038 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.027 0.973 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.253 0.747 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 8.276 -10.890 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.034 4.034 4 C 0.016 3.984 5 N -0.294 5.294 6 C -0.375 4.375 7 H 0.073 0.927 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.726 3.274 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.030 3.970 15 C -0.224 4.224 16 C 0.274 3.726 17 O -0.327 6.327 18 C -0.175 4.175 19 C -0.059 4.059 20 C -0.186 4.186 21 C 0.101 3.899 22 F -0.117 7.117 23 C -0.187 4.187 24 C -0.056 4.056 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.331 8.297 -10.809 17.100 hybrid contribution -1.022 -0.675 -0.126 1.231 sum -11.353 7.622 -10.935 17.509 Atomic orbital electron populations 1.22636 0.84373 1.01462 0.98352 1.88243 1.16407 1.27641 1.94793 1.23507 0.99036 0.84082 0.96760 1.21038 0.87366 0.96693 0.93331 1.43653 1.75456 1.02879 1.07441 1.18744 1.36293 0.81549 1.00943 0.92698 1.25061 0.96079 0.97639 0.99063 1.69977 1.33681 1.35972 1.13832 0.86484 0.78400 0.85658 0.76816 1.21084 1.21926 1.20688 1.20642 0.92549 0.94721 0.89111 1.22828 1.04224 0.99988 0.95351 1.22809 0.85835 0.78216 0.85773 1.90498 1.23556 1.42620 1.76061 1.20936 0.96447 1.01876 0.98205 1.21453 0.91170 0.95532 0.97767 1.21145 1.01639 1.01385 0.94418 1.18044 0.86593 0.97948 0.87333 1.91513 1.64051 1.93102 1.62988 1.21112 0.92275 1.03544 1.01816 1.21333 0.99244 0.93892 0.91111 0.95379 0.90748 0.95560 0.95816 0.95452 0.88123 0.94105 0.93684 0.92925 0.94120 0.89345 0.88400 0.83603 0.84162 0.84303 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.35 -7.45 10.18 -35.23 -0.36 -7.80 16 3 C 0.05 0.88 6.28 37.16 0.23 1.11 16 4 C 0.14 3.24 5.76 -4.04 -0.02 3.22 16 5 N -0.58 -13.82 2.41 -173.24 -0.42 -14.23 16 6 C -0.25 -6.57 8.95 -15.06 -0.13 -6.71 16 7 H 0.06 1.47 7.91 -52.48 -0.42 1.06 16 8 C 0.02 0.59 4.95 -17.43 -0.09 0.51 16 9 N -0.89 -25.72 11.53 55.49 0.64 -25.08 16 10 Si 0.90 21.97 29.60 -169.99 -5.03 16.94 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.16 3.26 5.01 -4.04 -0.02 3.24 16 15 C -0.18 -3.02 4.60 -27.88 -0.13 -3.15 16 16 C 0.40 6.06 7.11 -30.75 -0.22 5.84 16 17 O -0.45 -8.10 15.97 5.57 0.09 -8.01 16 18 C -0.17 -2.17 5.87 -105.07 -0.62 -2.79 16 19 C -0.04 -0.44 9.46 -39.13 -0.37 -0.81 16 20 C -0.17 -1.63 10.01 -39.58 -0.40 -2.03 16 21 C 0.12 1.24 7.31 -39.23 -0.29 0.96 16 22 F -0.14 -1.46 17.26 2.25 0.04 -1.43 16 23 C -0.17 -1.66 10.01 -39.59 -0.40 -2.06 16 24 C -0.04 -0.42 9.59 -39.13 -0.38 -0.80 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.48 6.48 -51.93 -0.34 0.15 16 30 H 0.10 2.66 5.58 -51.93 -0.29 2.37 16 31 H 0.04 0.86 7.86 -51.93 -0.41 0.46 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.05 1.19 8.04 -51.93 -0.42 0.77 16 34 H 0.04 0.83 7.79 -51.93 -0.40 0.42 16 35 H 0.09 1.35 6.43 -51.93 -0.33 1.02 16 36 H 0.10 1.63 8.08 -51.93 -0.42 1.21 16 37 H 0.15 1.41 7.05 -52.49 -0.37 1.04 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.14 1.53 7.65 -52.48 -0.40 1.13 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -30.84 344.05 -7.03 -37.87 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.47 Total: -1.54 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.71 Total: -1.91 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.22 Total: -39.31 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.27 Total: -15.81 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.84 -7.03 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.950 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds