Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99800 * 2 1 4 4 C 1.52996 * 109.47207 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47209 * 64.99158 * 4 3 2 6 6 C 1.36936 * 120.00169 * 269.99902 * 5 4 3 7 7 H 1.08005 * 119.99285 * 141.45478 * 6 5 4 8 8 C 1.38807 * 120.00099 * 321.45971 * 6 5 4 9 9 N 1.31620 * 120.00183 * 338.83445 * 8 6 5 10 10 Si 1.86798 * 119.99851 * 158.84421 * 8 6 5 11 11 H 1.48501 * 109.47316 * 59.99457 * 10 8 6 12 12 H 1.48508 * 109.47209 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47110 * 299.99606 * 10 8 6 14 14 C 1.46505 * 119.99805 * 90.00367 * 5 4 3 15 15 C 1.53001 * 109.47120 * 264.71047 * 14 5 4 16 16 C 1.50696 * 109.46829 * 179.97438 * 15 14 5 17 17 O 1.21269 * 120.00618 * 359.97438 * 16 15 14 18 18 C 1.47024 * 119.99667 * 179.97438 * 16 15 14 19 19 C 1.39935 * 120.14201 * 359.72971 * 18 16 15 20 20 C 1.37749 * 119.84913 * 179.74071 * 19 18 16 21 21 C 1.38716 * 120.14366 * 0.53335 * 20 19 18 22 22 F 1.35107 * 119.85403 * 179.69623 * 21 20 19 23 23 C 1.38717 * 120.29523 * 359.71607 * 21 20 19 24 24 C 1.37742 * 120.14406 * 0.02688 * 23 21 20 25 25 H 1.08996 * 109.47092 * 60.00395 * 1 2 3 26 26 H 1.08999 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47527 * 300.00626 * 1 2 3 28 28 H 1.08998 * 109.47202 * 59.99104 * 3 2 1 29 29 H 1.09004 * 109.46767 * 299.99605 * 3 2 1 30 30 H 1.09000 * 109.46966 * 304.99769 * 4 3 2 31 31 H 1.08997 * 109.47439 * 184.99906 * 4 3 2 32 32 H 0.96994 * 119.99973 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47060 * 144.70530 * 14 5 4 34 34 H 1.09006 * 109.46912 * 24.70741 * 14 5 4 35 35 H 1.08997 * 109.46882 * 59.99665 * 15 14 5 36 36 H 1.09000 * 109.46472 * 300.00135 * 15 14 5 37 37 H 1.08002 * 120.07721 * 359.97438 * 19 18 16 38 38 H 1.08002 * 119.92961 * 180.24775 * 20 19 18 39 39 H 1.08003 * 119.92521 * 179.97438 * 23 21 20 40 40 H 1.08004 * 120.07136 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0980 -0.7975 -1.3342 7 1 3.8086 -1.3109 -2.2393 8 6 4.5926 -1.5176 -0.2556 9 7 5.3194 -0.9142 0.6610 10 14 4.2271 -3.3433 -0.1049 11 1 4.7677 -4.0559 -1.2903 12 1 4.8651 -3.8760 1.1258 13 1 2.7585 -3.5496 -0.0306 14 6 4.2884 1.3996 -2.4130 15 6 3.0610 1.4868 -3.3224 16 6 3.3814 2.3470 -4.5175 17 8 4.4827 2.8420 -4.6307 18 6 2.3588 2.5861 -5.5464 19 6 1.0889 2.0118 -5.4218 20 6 0.1336 2.2441 -6.3867 21 6 0.4318 3.0364 -7.4856 22 9 -0.5076 3.2554 -8.4316 23 6 1.6904 3.6044 -7.6178 24 6 2.6531 3.3843 -6.6575 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8507 0.5687 0.8427 31 1 3.9784 2.1766 0.0902 32 1 5.6647 -1.4173 1.4149 33 1 5.1189 0.9595 -2.9648 34 1 4.5641 2.3996 -2.0780 35 1 2.2305 1.9269 -2.7705 36 1 2.7853 0.4868 -3.6573 37 1 0.8570 1.3908 -4.5691 38 1 -0.8482 1.8048 -6.2897 39 1 1.9163 4.2199 -8.4761 40 1 3.6327 3.8268 -6.7618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459540403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -97.036667 kcal Electronic energy + Delta-G solvation = -23539.034695 eV Core-core repulsion = 19847.754552 eV Total energy + Delta-G solvation = -3691.280143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02442 -41.05546 -39.14281 -38.72663 -37.07919 -33.89583 -32.69665 -32.06376 -31.41657 -29.74778 -27.09579 -26.50980 -24.93591 -24.07411 -23.23416 -21.99276 -20.66493 -18.89591 -18.61736 -17.75052 -17.40907 -17.13934 -16.73049 -16.68513 -16.45659 -16.13782 -15.86314 -15.55589 -15.34674 -15.15643 -14.78670 -14.60824 -14.10599 -13.94977 -13.79403 -13.48745 -13.35919 -13.15282 -12.88189 -12.63505 -12.37387 -12.33697 -12.28559 -12.02983 -11.90012 -11.54160 -11.46583 -10.78942 -10.37109 -10.23872 -10.20988 -9.83005 -8.46524 -7.72338 -5.34012 -0.51838 0.19917 1.31735 1.49886 1.54202 1.60133 2.58345 2.61700 2.97393 3.12689 3.26137 3.41104 3.65284 3.77965 3.86493 4.15887 4.19177 4.22496 4.30520 4.47314 4.50487 4.60878 4.67641 4.78567 4.81283 4.87806 4.89959 4.91374 4.96521 5.00748 5.01950 5.10962 5.16090 5.30937 5.43076 5.74813 5.75177 5.82835 6.50613 6.55895 6.72231 7.28162 7.94840 8.46986 9.25075 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.003811 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.869830 B = 7346.299215 C = 7774.283327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.056 3.944 4 C 0.140 3.860 5 N -0.589 5.589 6 C -0.241 4.241 7 H 0.052 0.948 8 C -0.028 4.028 9 N -0.924 5.924 10 Si 0.950 3.050 11 H -0.278 1.278 12 H -0.298 1.298 13 H -0.279 1.279 14 C 0.158 3.842 15 C -0.168 4.168 16 C 0.405 3.595 17 O -0.488 6.488 18 C -0.191 4.191 19 C -0.037 4.037 20 C -0.163 4.163 21 C 0.119 3.881 22 F -0.138 7.138 23 C -0.164 4.164 24 C -0.042 4.042 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.247 0.753 33 H 0.024 0.976 34 H 0.040 0.960 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 8.695 -12.283 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.022 4.022 4 C 0.013 3.987 5 N -0.310 5.310 6 C -0.371 4.371 7 H 0.069 0.931 8 C -0.225 4.225 9 N -0.569 5.569 10 Si 0.779 3.221 11 H -0.204 1.204 12 H -0.225 1.225 13 H -0.205 1.205 14 C 0.032 3.968 15 C -0.208 4.208 16 C 0.285 3.715 17 O -0.366 6.366 18 C -0.192 4.192 19 C -0.055 4.055 20 C -0.181 4.181 21 C 0.099 3.901 22 F -0.117 7.117 23 C -0.183 4.183 24 C -0.060 4.060 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.179 0.821 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.008 8.727 -12.228 19.872 hybrid contribution -0.255 -0.739 0.231 0.816 sum -13.263 7.988 -11.997 19.587 Atomic orbital electron populations 1.22833 0.81563 1.02547 1.00235 1.88161 1.19577 1.28539 1.95195 1.23242 0.96179 0.84115 0.98702 1.20965 0.90282 0.95991 0.91418 1.43814 1.76143 1.02414 1.08601 1.18924 1.34656 0.83026 1.00508 0.93079 1.25669 0.96615 1.00872 0.99335 1.70109 1.35383 1.37003 1.14404 0.85628 0.77973 0.81958 0.76537 1.20417 1.22461 1.20543 1.20617 0.93837 0.93748 0.88613 1.22538 1.02263 1.00698 0.95282 1.22801 0.85907 0.77025 0.85788 1.90495 1.25067 1.44197 1.76809 1.20680 0.96472 1.03888 0.98140 1.21560 0.90423 0.95154 0.98375 1.21379 1.02398 1.00728 0.93600 1.18221 0.86654 0.97783 0.87403 1.91520 1.64051 1.93070 1.63034 1.21294 0.91732 1.03291 1.01976 1.21384 0.99707 0.93782 0.91116 0.93148 0.90193 0.93872 0.93732 0.93332 0.91936 0.93398 0.94349 0.95702 0.94158 0.87484 0.88312 0.82436 0.81782 0.82119 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -16.05 10.18 -148.98 -1.52 -17.56 16 3 C 0.06 2.07 6.28 71.98 0.45 2.52 16 4 C 0.14 6.38 5.76 86.38 0.50 6.88 16 5 N -0.59 -28.53 2.41 -702.00 -1.69 -30.22 16 6 C -0.24 -13.01 8.95 84.03 0.75 -12.25 16 7 H 0.05 2.75 7.91 -2.91 -0.02 2.73 16 8 C -0.03 -1.59 4.95 84.86 0.42 -1.17 16 9 N -0.92 -54.81 11.53 21.65 0.25 -54.56 16 10 Si 0.95 45.70 29.60 68.60 2.03 47.73 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.16 6.64 5.01 86.38 0.43 7.07 16 15 C -0.17 -5.35 4.60 29.85 0.14 -5.21 16 16 C 0.41 12.07 7.11 27.99 0.20 12.27 16 17 O -0.49 -17.62 15.97 -3.00 -0.05 -17.66 16 18 C -0.19 -4.44 5.87 -20.15 -0.12 -4.56 16 19 C -0.04 -0.69 9.46 22.57 0.21 -0.47 16 20 C -0.16 -2.62 10.01 22.27 0.22 -2.40 16 21 C 0.12 2.09 7.31 22.50 0.16 2.25 16 22 F -0.14 -2.52 17.26 44.97 0.78 -1.74 16 23 C -0.16 -2.81 10.01 22.27 0.22 -2.59 16 24 C -0.04 -0.87 9.59 22.56 0.22 -0.65 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.57 6.48 -2.39 -0.02 1.55 16 30 H 0.06 3.39 5.58 -2.39 -0.01 3.38 16 31 H 0.05 2.04 7.86 -2.39 -0.02 2.02 16 32 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.02 1.15 8.04 -2.39 -0.02 1.13 16 34 H 0.04 1.66 7.79 -2.38 -0.02 1.65 16 35 H 0.11 3.01 6.43 -2.39 -0.02 2.99 16 36 H 0.10 3.16 8.08 -2.39 -0.02 3.14 16 37 H 0.16 2.52 7.05 -2.91 -0.02 2.50 16 38 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 2.94 7.65 -2.91 -0.02 2.91 16 Total: -1.00 -67.67 344.05 5.90 -61.76 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.04 Total: 8.61 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.06 Total: 3.64 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.44 Total: -84.78 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.56 Total: -35.23 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.67 5.90 -61.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.274 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds