Wall clock time and date at job start Tue Mar 31 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35997 * 117.00230 * 2 1 4 4 C 1.38567 * 120.05627 * 0.02562 * 3 2 1 5 5 C 1.38428 * 119.97370 * 179.97438 * 4 3 2 6 6 F 1.35094 * 119.95235 * 179.97438 * 5 4 3 7 7 C 1.38447 * 120.09481 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.93897 * 180.02562 * 7 5 4 9 9 N 1.46494 * 109.47263 * 285.00332 * 8 7 5 10 10 C 1.36934 * 120.00227 * 90.00069 * 9 8 7 11 11 H 1.08002 * 119.99792 * 304.88582 * 10 9 8 12 12 C 1.38813 * 120.00427 * 124.88279 * 10 9 8 13 13 N 1.31616 * 120.00402 * 163.21190 * 12 10 9 14 14 Si 1.86808 * 119.99734 * 343.21175 * 12 10 9 15 15 H 1.48495 * 109.47010 * 91.11797 * 14 12 10 16 16 H 1.48497 * 109.46780 * 211.11492 * 14 12 10 17 17 H 1.48496 * 109.47056 * 331.11492 * 14 12 10 18 18 C 1.46500 * 120.00077 * 269.99372 * 9 8 7 19 19 C 1.52994 * 117.49870 * 182.68980 * 18 9 8 20 20 C 1.53002 * 117.49769 * 114.02989 * 18 9 8 21 21 C 1.38252 * 120.12394 * 0.02562 * 7 5 4 22 22 C 1.38541 * 120.02002 * 359.72245 * 21 7 5 23 23 O 1.36040 * 120.04854 * 180.29891 * 22 21 7 24 24 C 1.42898 * 116.99917 * 0.23065 * 23 22 21 25 25 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46872 * 59.99615 * 1 2 3 27 27 H 1.09001 * 109.47386 * 299.99995 * 1 2 3 28 28 H 1.07996 * 120.00946 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.46609 * 45.00913 * 8 7 5 30 30 H 1.09003 * 109.46705 * 164.99737 * 8 7 5 31 31 H 0.96994 * 120.00010 * 180.02562 * 13 12 10 32 32 H 1.08999 * 115.55100 * 328.36431 * 18 9 8 33 33 H 1.09002 * 117.50279 * 0.02562 * 19 18 9 34 34 H 1.09002 * 117.49774 * 145.02334 * 19 18 9 35 35 H 1.08999 * 117.50174 * 214.98452 * 20 18 9 36 36 H 1.08999 * 117.49550 * 0.02562 * 20 18 9 37 37 H 1.08000 * 119.98984 * 179.97438 * 21 7 5 38 38 H 1.08999 * 109.47084 * 300.00018 * 24 23 22 39 39 H 1.08997 * 109.47077 * 59.99718 * 24 23 22 40 40 H 1.09005 * 109.46768 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2929 2.3746 0.0005 5 6 1.9232 3.6071 0.0011 6 9 1.1882 4.7406 0.0011 7 6 3.3057 3.6798 0.0016 8 6 3.9883 5.0234 0.0028 9 7 3.8911 5.6216 -1.3309 10 6 2.8244 6.4198 -1.6473 11 1 1.8175 6.0476 -1.5286 12 6 3.0370 7.7074 -2.1205 13 7 2.0657 8.3535 -2.7298 14 14 4.7021 8.5231 -1.8923 15 1 5.5576 8.2403 -3.0726 16 1 4.5195 9.9902 -1.7534 17 1 5.3524 7.9872 -0.6697 18 6 4.9353 5.3661 -2.3262 19 6 4.8092 6.0697 -3.6789 20 6 4.5447 4.5659 -3.5704 21 6 4.0614 2.5221 0.0011 22 6 3.4358 1.2860 0.0058 23 8 4.1788 0.1464 0.0114 24 6 5.5997 0.2985 0.0173 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 0.2144 2.3194 0.0005 29 1 3.5047 5.6758 0.7298 30 1 5.0377 4.8975 0.2691 31 1 2.2144 9.2530 -3.0607 32 1 5.9389 5.2183 -1.9274 33 1 3.9496 6.7230 -3.8283 34 1 5.7299 6.3845 -4.1702 35 1 5.2914 3.8919 -3.9903 36 1 3.5107 4.2300 -3.6486 37 1 5.1398 2.5813 0.0011 38 1 5.9101 0.8461 -0.8725 39 1 5.9024 0.8499 0.9073 40 1 6.0702 -0.6848 0.0209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568278727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:07 Heat of formation + Delta-G solvation = -51.052649 kcal Electronic energy + Delta-G solvation = -24734.257039 eV Core-core repulsion = 21044.970913 eV Total energy + Delta-G solvation = -3689.286126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.68967 -41.48677 -39.43597 -39.13531 -37.67694 -34.80779 -33.87507 -31.48664 -30.88273 -28.55046 -28.02927 -26.94368 -25.08997 -23.30509 -23.16478 -22.55045 -21.52640 -19.54495 -18.86946 -18.34067 -18.16841 -17.25013 -16.99989 -16.70690 -16.56087 -16.17156 -16.09444 -15.65713 -15.45246 -15.30785 -15.24500 -14.86584 -14.05488 -13.88116 -13.61658 -13.42599 -13.30895 -13.12485 -12.64435 -12.59415 -12.41088 -12.17869 -12.11681 -12.04935 -11.97992 -11.74277 -11.51599 -11.24916 -10.83822 -10.43449 -9.74238 -8.74417 -8.34101 -8.06442 -5.78343 0.15563 0.28292 1.45058 1.47779 1.59746 2.26853 2.35846 2.50296 2.52750 3.06028 3.28546 3.44008 3.46514 3.70164 3.91036 4.11969 4.17055 4.26656 4.35514 4.37256 4.38855 4.46359 4.49063 4.50600 4.54558 4.68788 4.75446 4.82427 4.93461 4.95470 4.99972 5.06757 5.13228 5.34018 5.43410 5.58752 5.67606 6.03758 6.06189 6.47707 6.56787 7.14819 7.63114 8.12524 9.02620 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.005483 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.399558 B = 5105.699839 C = 5849.101882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.110 3.890 4 C -0.215 4.215 5 C 0.092 3.908 6 F -0.145 7.145 7 C -0.124 4.124 8 C 0.184 3.816 9 N -0.576 5.576 10 C -0.272 4.272 11 H 0.040 0.960 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.940 3.060 15 H -0.249 1.249 16 H -0.319 1.319 17 H -0.259 1.259 18 C 0.105 3.895 19 C -0.212 4.212 20 C -0.194 4.194 21 C -0.127 4.127 22 C 0.082 3.918 23 O -0.323 6.323 24 C 0.015 3.985 25 H 0.127 0.873 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.262 0.738 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.054 0.946 37 H 0.169 0.831 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -17.049 6.480 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C 0.064 3.936 4 C -0.235 4.235 5 C 0.072 3.928 6 F -0.123 7.123 7 C -0.128 4.128 8 C 0.059 3.941 9 N -0.296 5.296 10 C -0.402 4.402 11 H 0.057 0.943 12 C -0.189 4.189 13 N -0.591 5.591 14 Si 0.766 3.234 15 H -0.174 1.174 16 H -0.248 1.248 17 H -0.183 1.183 18 C -0.002 4.002 19 C -0.249 4.249 20 C -0.234 4.234 21 C -0.146 4.146 22 C 0.036 3.964 23 O -0.238 6.238 24 C -0.079 4.079 25 H 0.145 0.855 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.172 0.828 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.187 0.813 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.763 -17.237 6.437 19.603 hybrid contribution -0.477 1.518 -0.333 1.626 sum 6.286 -15.719 6.105 17.996 Atomic orbital electron populations 1.23369 0.76679 1.05787 1.01979 1.86135 1.23095 1.25004 1.88970 1.17939 0.89444 0.84687 1.01567 1.21017 1.01467 0.90045 1.10935 1.17533 0.89725 0.81626 1.03932 1.91499 1.77285 1.49839 1.93712 1.20700 0.91854 0.98671 1.01561 1.19930 0.98917 0.88509 0.86733 1.43651 1.23595 1.54163 1.08188 1.18602 0.86936 0.92910 1.41767 0.94283 1.26445 0.99957 0.96719 0.95768 1.70012 1.35741 1.13525 1.39806 0.85902 0.81945 0.75198 0.80336 1.17374 1.24796 1.18336 1.21637 0.92872 1.01506 0.84137 1.23415 1.02761 0.96292 1.02479 1.23258 1.00785 0.93174 1.06216 1.20959 1.01364 0.88573 1.03689 1.18276 0.88246 0.86630 1.03262 1.86129 1.20719 1.27702 1.89201 1.23392 0.76547 1.05536 1.02413 0.85504 0.92536 0.91776 0.82816 0.93033 0.89397 0.92944 0.85565 0.90357 0.88240 0.87209 0.92679 0.81349 0.91909 0.91312 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -8.91 10.28 -79.61 -0.82 -9.73 16 3 C 0.11 3.42 6.70 22.56 0.15 3.57 16 4 C -0.22 -7.11 9.01 22.39 0.20 -6.91 16 5 C 0.09 3.60 7.20 22.36 0.16 3.76 16 6 F -0.14 -6.75 14.20 44.97 0.64 -6.11 16 7 C -0.12 -4.44 5.47 -19.81 -0.11 -4.54 16 8 C 0.18 7.03 5.56 85.64 0.48 7.51 16 9 N -0.58 -26.20 2.03 -682.36 -1.39 -27.59 16 10 C -0.27 -15.32 8.67 84.03 0.73 -14.59 16 11 H 0.04 2.53 5.96 -2.91 -0.02 2.52 16 12 C 0.01 0.50 3.67 84.86 0.31 0.81 16 13 N -0.95 -59.37 13.97 21.65 0.30 -59.07 16 14 Si 0.94 45.10 25.03 68.60 1.72 46.82 16 15 H -0.25 -10.98 5.83 99.48 0.58 -10.40 16 16 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 C 0.11 4.14 5.16 44.99 0.23 4.37 16 19 C -0.21 -8.90 6.75 30.62 0.21 -8.69 16 20 C -0.19 -7.40 10.37 30.62 0.32 -7.08 16 21 C -0.13 -3.63 8.65 22.35 0.19 -3.44 16 22 C 0.08 2.41 6.70 22.56 0.15 2.57 16 23 O -0.32 -8.47 10.28 -80.10 -0.82 -9.30 16 24 C 0.02 0.24 9.81 113.37 1.11 1.36 16 25 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 27 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 28 H 0.15 4.42 6.30 -2.91 -0.02 4.40 16 29 H 0.05 2.15 7.97 -2.39 -0.02 2.13 16 30 H 0.09 2.66 7.88 -2.39 -0.02 2.64 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.08 4.06 5.11 -2.39 -0.01 4.04 16 34 H 0.10 3.63 7.88 -2.39 -0.02 3.62 16 35 H 0.11 3.31 8.14 -2.39 -0.02 3.30 16 36 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.17 3.64 6.23 -2.91 -0.02 3.62 16 38 H 0.06 0.93 7.65 -2.39 -0.02 0.92 16 39 H 0.07 0.91 7.67 -2.39 -0.02 0.89 16 40 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -73.01 326.38 5.81 -67.20 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.93 Total: 17.66 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 5.25 Total: -19.90 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -1.08 Total: -86.66 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.64 Total: -19.02 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.64 Total: -6.11 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.72 Total: 46.82 kcal Total: -73.01 5.81 -67.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568278727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.150 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds