Wall clock time and date at job start Tue Mar 31 2020 06:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36231 * 117.00027 * 2 1 4 4 C 1.38675 * 122.58495 * 0.02562 * 3 2 1 5 5 C 1.33423 * 114.88453 * 179.73772 * 4 3 2 6 6 S 1.75871 * 109.65972 * 359.97438 * 5 4 3 7 7 C 1.33626 * 122.58817 * 179.73289 * 3 2 1 8 8 C 1.50698 * 125.19536 * 0.24701 * 7 3 2 9 9 N 1.46892 * 109.47344 * 89.99889 * 8 7 3 10 10 C 1.46850 * 111.00212 * 294.20952 * 9 8 7 11 11 C 1.53039 * 109.52430 * 174.16182 * 10 9 8 12 12 C 1.53121 * 109.27824 * 59.17938 * 11 10 9 13 13 C 1.53001 * 109.52070 * 182.43727 * 12 11 10 14 14 C 1.50691 * 109.47332 * 294.68615 * 13 12 11 15 15 H 1.08003 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00327 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99253 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00393 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47297 * 89.99692 * 18 16 14 20 20 H 1.48499 * 109.47272 * 210.00034 * 18 16 14 21 21 H 1.48506 * 109.47030 * 330.00126 * 18 16 14 22 22 C 1.53118 * 109.15917 * 302.34286 * 12 11 10 23 23 C 1.46851 * 111.00177 * 169.99956 * 9 8 7 24 24 H 1.08999 * 109.47731 * 300.00340 * 1 2 3 25 25 H 1.08998 * 109.47000 * 60.00701 * 1 2 3 26 26 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08001 * 122.55559 * 359.71294 * 4 3 2 28 28 H 1.08000 * 125.16949 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47031 * 210.00201 * 8 7 3 30 30 H 1.09002 * 109.46947 * 329.99693 * 8 7 3 31 31 H 1.09002 * 109.45997 * 294.17419 * 10 9 8 32 32 H 1.08992 * 109.46101 * 54.14222 * 10 9 8 33 33 H 1.08998 * 109.50468 * 299.23800 * 11 10 9 34 34 H 1.08999 * 109.53174 * 179.13802 * 11 10 9 35 35 H 1.08999 * 109.57594 * 62.28223 * 12 11 10 36 36 H 1.09005 * 109.46675 * 54.68713 * 13 12 11 37 37 H 1.08995 * 109.47173 * 174.67885 * 13 12 11 38 38 H 0.97002 * 119.99593 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.50370 * 297.71677 * 22 12 11 40 40 H 1.09003 * 109.53254 * 177.61701 * 22 12 11 41 41 H 1.08998 * 109.45942 * 305.85730 * 23 9 8 42 42 H 1.09004 * 109.46155 * 65.83498 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3454 2.4097 0.0005 5 6 2.1050 3.5066 0.0060 6 16 3.8034 3.0502 0.0116 7 6 3.3774 1.3439 0.0052 8 6 4.3617 0.2029 0.0064 9 7 4.6868 -0.1649 -1.3780 10 6 3.5109 -0.7117 -2.0672 11 6 3.8459 -0.9469 -3.5419 12 6 5.0206 -1.9238 -3.6439 13 6 5.3996 -2.1160 -5.1137 14 6 4.2652 -2.7907 -5.8408 15 1 3.3642 -3.0563 -5.3079 16 6 4.3779 -3.0700 -7.1864 17 7 5.4754 -2.7470 -7.8352 18 14 2.9721 -3.9070 -8.0876 19 1 2.0505 -2.8777 -8.6320 20 1 3.5154 -4.7242 -9.2021 21 1 2.2326 -4.7845 -7.1450 22 6 6.2169 -1.3529 -2.8774 23 6 5.8133 -1.1060 -1.4220 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2662 2.4501 -0.0036 28 1 1.7333 4.5207 0.0076 29 1 5.2710 0.5080 0.5244 30 1 3.9233 -0.6547 0.5168 31 1 3.2255 -1.6564 -1.6045 32 1 2.6842 -0.0056 -1.9907 33 1 4.1182 -0.0004 -4.0087 34 1 2.9780 -1.3671 -4.0502 35 1 4.7360 -2.8835 -3.2126 36 1 5.5960 -1.1449 -5.5682 37 1 6.2937 -2.7358 -5.1803 38 1 5.5549 -2.9437 -8.7817 39 1 6.5264 -0.4127 -3.3337 40 1 7.0433 -2.0629 -2.9104 41 1 6.6586 -0.6861 -0.8769 42 1 5.5169 -2.0489 -0.9624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583935280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:27 Heat of formation + Delta-G solvation = -13.547202 kcal Electronic energy + Delta-G solvation = -21921.958433 eV Core-core repulsion = 18800.511841 eV Total energy + Delta-G solvation = -3121.446592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04788 -38.44574 -35.95582 -34.54591 -32.41098 -30.62599 -30.06148 -28.10850 -26.85924 -25.23639 -23.68664 -22.78340 -22.15256 -20.50352 -19.62831 -18.78546 -17.47897 -16.72392 -16.24120 -16.08454 -15.28923 -15.16702 -14.59795 -14.42183 -14.03035 -13.65143 -13.43325 -13.10171 -12.96534 -12.84323 -12.29234 -12.24846 -11.89854 -11.73881 -11.45961 -11.38033 -11.08516 -11.02771 -10.85117 -10.71501 -10.54962 -10.49159 -10.18604 -9.85219 -9.42709 -8.95197 -8.82003 -8.71037 -8.26828 -8.08868 -7.87266 -5.91898 -3.92764 0.88913 1.53886 1.85260 2.60088 3.35775 3.41938 3.45144 3.52016 4.31252 4.52074 4.60110 4.90925 4.99348 5.05265 5.13161 5.36062 5.42107 5.43955 5.48847 5.56059 5.60826 5.70298 5.76854 5.83551 5.90985 6.02563 6.14895 6.26658 6.28789 6.41491 6.55274 6.69950 6.78579 7.08546 7.20720 7.22217 7.30147 7.44990 7.53312 7.77641 7.95329 8.09860 8.53470 9.13894 9.70187 11.19576 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.003819 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.039880 B = 7329.363637 C = 8001.490698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.098 3.902 4 C -0.188 4.188 5 C -0.199 4.199 6 S 0.149 5.851 7 C -0.211 4.211 8 C 0.135 3.865 9 N -0.532 5.532 10 C 0.062 3.938 11 C -0.099 4.099 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.111 4.111 23 C 0.060 3.940 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.142 0.858 28 H 0.166 0.834 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.259 0.741 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 10.911 19.656 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.042 3.958 4 C -0.221 4.221 5 C -0.335 4.335 6 S 0.411 5.589 7 C -0.329 4.329 8 C 0.006 3.994 9 N -0.257 5.257 10 C -0.065 4.065 11 C -0.136 4.136 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.148 4.148 23 C -0.068 4.068 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.159 0.841 28 H 0.184 0.816 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.285 11.925 19.245 23.249 hybrid contribution -2.718 -1.740 -0.274 3.239 sum -8.003 10.185 18.971 22.971 Atomic orbital electron populations 1.23008 0.78777 1.03817 1.00923 1.86211 1.20765 1.25053 1.89643 1.17624 0.91035 0.85131 1.01973 1.20174 1.01395 0.91559 1.08961 1.25423 0.97046 1.02488 1.08588 1.84205 1.04948 0.97248 1.72458 1.23436 0.94917 0.98420 1.16127 1.20244 0.95450 0.92854 0.90822 1.62008 1.07476 1.43198 1.13001 1.22170 0.91607 0.97209 0.95539 1.21543 0.99390 0.99732 0.92978 1.21231 0.93337 0.96581 0.98830 1.19115 0.96416 0.96841 0.88521 1.21268 1.01719 1.38139 0.93910 0.92759 1.25014 0.95610 0.96084 0.97791 1.69974 1.26365 1.48087 1.09232 0.86665 0.82662 0.79586 0.79512 1.20770 1.21330 1.19979 1.21677 0.98737 1.01109 0.93315 1.22102 0.92818 0.93328 0.98538 0.93183 0.92811 0.88389 0.84074 0.81643 0.90421 0.93165 0.95523 0.91337 0.92131 0.91206 0.93129 0.96550 0.96816 0.93164 0.91635 0.92181 0.91726 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.92 101.05 1.00 1.27 16 2 O -0.30 -3.86 8.89 -20.48 -0.18 -4.04 16 3 C 0.10 1.25 5.44 -41.04 -0.22 1.03 16 4 C -0.19 -1.98 9.16 -41.10 -0.38 -2.36 16 5 C -0.20 -1.93 11.22 29.05 0.33 -1.60 16 6 S 0.15 1.64 23.32 -107.50 -2.51 -0.87 16 7 C -0.21 -2.77 5.45 -35.93 -0.20 -2.97 16 8 C 0.14 1.84 5.30 -4.98 -0.03 1.82 16 9 N -0.53 -8.46 4.65 -236.11 -1.10 -9.56 16 10 C 0.06 1.08 4.81 -3.83 -0.02 1.06 16 11 C -0.10 -1.99 5.15 -26.65 -0.14 -2.13 16 12 C -0.08 -1.73 2.20 -90.50 -0.20 -1.93 16 13 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 14 C -0.51 -14.62 8.44 -34.44 -0.29 -14.91 16 15 H 0.05 1.51 7.08 -52.48 -0.37 1.14 16 16 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.11 -2.01 5.38 -26.65 -0.14 -2.15 16 23 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 24 H 0.05 0.35 7.85 -51.93 -0.41 -0.05 16 25 H 0.05 0.44 7.84 -51.93 -0.41 0.03 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.14 1.17 6.91 -52.49 -0.36 0.81 16 28 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.08 0.94 7.99 -51.93 -0.41 0.52 16 30 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.18 5.43 -51.93 -0.28 0.90 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.49 7.05 -51.93 -0.37 1.13 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.87 8.02 -51.93 -0.42 0.46 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.62 344.61 -10.21 -41.83 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.80 Total: -3.01 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -0.52 Total: -19.84 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.36 Total: -36.25 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.18 Total: -4.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.51 Total: -0.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.62 -10.21 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583935280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.279 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds