Wall clock time and date at job start Tue Mar 31 2020 06:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36231 * 117.00027 * 2 1 4 4 C 1.38675 * 122.58495 * 0.02562 * 3 2 1 5 5 C 1.33423 * 114.88453 * 179.73772 * 4 3 2 6 6 S 1.75871 * 109.65972 * 359.97438 * 5 4 3 7 7 C 1.33626 * 122.58817 * 179.73289 * 3 2 1 8 8 C 1.50698 * 125.19536 * 0.24701 * 7 3 2 9 9 N 1.46892 * 109.47344 * 89.99889 * 8 7 3 10 10 C 1.46850 * 111.00212 * 294.20952 * 9 8 7 11 11 C 1.53039 * 109.52430 * 174.16182 * 10 9 8 12 12 C 1.53121 * 109.27824 * 59.17938 * 11 10 9 13 13 C 1.53001 * 109.52070 * 182.43727 * 12 11 10 14 14 C 1.50691 * 109.47332 * 294.68615 * 13 12 11 15 15 H 1.08003 * 120.00036 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00327 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99253 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00393 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47297 * 89.99692 * 18 16 14 20 20 H 1.48499 * 109.47272 * 210.00034 * 18 16 14 21 21 H 1.48506 * 109.47030 * 330.00126 * 18 16 14 22 22 C 1.53118 * 109.15917 * 302.34286 * 12 11 10 23 23 C 1.46851 * 111.00177 * 169.99956 * 9 8 7 24 24 H 1.08999 * 109.47731 * 300.00340 * 1 2 3 25 25 H 1.08998 * 109.47000 * 60.00701 * 1 2 3 26 26 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08001 * 122.55559 * 359.71294 * 4 3 2 28 28 H 1.08000 * 125.16949 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47031 * 210.00201 * 8 7 3 30 30 H 1.09002 * 109.46947 * 329.99693 * 8 7 3 31 31 H 1.09002 * 109.45997 * 294.17419 * 10 9 8 32 32 H 1.08992 * 109.46101 * 54.14222 * 10 9 8 33 33 H 1.08998 * 109.50468 * 299.23800 * 11 10 9 34 34 H 1.08999 * 109.53174 * 179.13802 * 11 10 9 35 35 H 1.08999 * 109.57594 * 62.28223 * 12 11 10 36 36 H 1.09005 * 109.46675 * 54.68713 * 13 12 11 37 37 H 1.08995 * 109.47173 * 174.67885 * 13 12 11 38 38 H 0.97002 * 119.99593 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.50370 * 297.71677 * 22 12 11 40 40 H 1.09003 * 109.53254 * 177.61701 * 22 12 11 41 41 H 1.08998 * 109.45942 * 305.85730 * 23 9 8 42 42 H 1.09004 * 109.46155 * 65.83498 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3454 2.4097 0.0005 5 6 2.1050 3.5066 0.0060 6 16 3.8034 3.0502 0.0116 7 6 3.3774 1.3439 0.0052 8 6 4.3617 0.2029 0.0064 9 7 4.6868 -0.1649 -1.3780 10 6 3.5109 -0.7117 -2.0672 11 6 3.8459 -0.9469 -3.5419 12 6 5.0206 -1.9238 -3.6439 13 6 5.3996 -2.1160 -5.1137 14 6 4.2652 -2.7907 -5.8408 15 1 3.3642 -3.0563 -5.3079 16 6 4.3779 -3.0700 -7.1864 17 7 5.4754 -2.7470 -7.8352 18 14 2.9721 -3.9070 -8.0876 19 1 2.0505 -2.8777 -8.6320 20 1 3.5154 -4.7242 -9.2021 21 1 2.2326 -4.7845 -7.1450 22 6 6.2169 -1.3529 -2.8774 23 6 5.8133 -1.1060 -1.4220 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2662 2.4501 -0.0036 28 1 1.7333 4.5207 0.0076 29 1 5.2710 0.5080 0.5244 30 1 3.9233 -0.6547 0.5168 31 1 3.2255 -1.6564 -1.6045 32 1 2.6842 -0.0056 -1.9907 33 1 4.1182 -0.0004 -4.0087 34 1 2.9780 -1.3671 -4.0502 35 1 4.7360 -2.8835 -3.2126 36 1 5.5960 -1.1449 -5.5682 37 1 6.2937 -2.7358 -5.1803 38 1 5.5549 -2.9437 -8.7817 39 1 6.5264 -0.4127 -3.3337 40 1 7.0433 -2.0629 -2.9104 41 1 6.6586 -0.6861 -0.8769 42 1 5.5169 -2.0489 -0.9624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583935280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:26 Heat of formation + Delta-G solvation = -32.481870 kcal Electronic energy + Delta-G solvation = -21922.779502 eV Core-core repulsion = 18800.511841 eV Total energy + Delta-G solvation = -3122.267661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96201 -39.80555 -36.88158 -36.11682 -34.36765 -31.95200 -31.44805 -29.57117 -27.94415 -26.47011 -25.18483 -24.12157 -23.46733 -22.12810 -20.54574 -20.31647 -18.44088 -18.34290 -17.58627 -17.19309 -16.53961 -16.27229 -16.10344 -15.76748 -15.14754 -15.04320 -14.72467 -14.57923 -14.25903 -13.87686 -13.82805 -13.51023 -13.23751 -13.15867 -12.87617 -12.74227 -12.58969 -12.49287 -12.19581 -12.08412 -11.98677 -11.82435 -11.67651 -11.62968 -11.25744 -10.85984 -10.70541 -10.51274 -9.58842 -9.22509 -8.82883 -8.16704 -6.26235 0.06310 0.72086 1.04730 1.38874 1.40303 1.51160 1.75751 2.42040 2.73298 3.09599 3.16461 3.78914 4.03527 4.05761 4.07638 4.17364 4.23119 4.38766 4.43355 4.45420 4.56989 4.62147 4.68319 4.69314 4.77501 4.79928 4.86812 4.87614 4.99533 5.04489 5.10016 5.16159 5.38194 5.41520 5.42783 5.46166 5.58232 5.81218 5.89748 6.16881 6.22292 6.31580 6.42184 6.89408 7.41812 8.95353 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.003819 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.039880 B = 7329.363637 C = 8001.490698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.326 6.326 3 C 0.093 3.907 4 C -0.201 4.201 5 C -0.185 4.185 6 S 0.146 5.854 7 C -0.245 4.245 8 C 0.141 3.859 9 N -0.540 5.540 10 C 0.081 3.919 11 C -0.091 4.091 12 C -0.074 4.074 13 C 0.035 3.965 14 C -0.530 4.530 15 H 0.058 0.942 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.960 3.040 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.264 1.264 22 C -0.105 4.105 23 C 0.066 3.934 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.164 0.836 28 H 0.197 0.803 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.046 0.954 36 H -0.013 1.013 37 H -0.012 1.012 38 H 0.262 0.738 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 11.569 21.037 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C 0.037 3.963 4 C -0.233 4.233 5 C -0.321 4.321 6 S 0.409 5.591 7 C -0.363 4.363 8 C 0.012 3.988 9 N -0.266 5.266 10 C -0.047 4.047 11 C -0.129 4.129 12 C -0.093 4.093 13 C -0.002 4.002 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.143 4.143 23 C -0.061 4.061 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.181 0.819 28 H 0.214 0.786 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.879 12.584 20.648 25.140 hybrid contribution -2.237 -1.900 -0.705 3.018 sum -9.115 10.685 19.943 24.392 Atomic orbital electron populations 1.23238 0.76993 1.04934 1.02006 1.86167 1.22774 1.25575 1.89578 1.17944 0.91268 0.85841 1.01269 1.20397 1.02618 0.90924 1.09393 1.25833 0.95982 1.03773 1.06502 1.84156 1.06255 0.96104 1.72571 1.23517 0.95234 0.99244 1.18313 1.20216 0.96441 0.93076 0.89044 1.61975 1.06829 1.42931 1.14821 1.21875 0.92387 0.97172 0.93281 1.21404 0.98023 0.98301 0.95181 1.21082 0.95319 0.97045 0.95812 1.18996 0.95026 0.94427 0.91773 1.21636 1.02294 1.38263 0.94589 0.92411 1.25948 0.98407 0.96711 0.98781 1.70111 1.28573 1.49216 1.09690 0.85520 0.79180 0.78636 0.78174 1.19860 1.20754 1.18807 1.21588 0.97383 1.00443 0.94911 1.22050 0.93737 0.93913 0.96448 0.91359 0.92393 0.87389 0.81910 0.78630 0.88827 0.93661 0.95856 0.91078 0.93655 0.92942 0.93553 0.99448 0.99412 0.92929 0.92617 0.91638 0.88919 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.92 113.37 1.12 1.49 16 2 O -0.33 -7.92 8.89 -96.19 -0.86 -8.77 16 3 C 0.09 2.23 5.44 21.33 0.12 2.35 16 4 C -0.20 -3.76 9.16 21.28 0.19 -3.56 16 5 C -0.18 -3.07 11.22 66.73 0.75 -2.32 16 6 S 0.15 2.98 23.32 -56.49 -1.32 1.66 16 7 C -0.25 -6.11 5.45 24.64 0.13 -5.98 16 8 C 0.14 3.63 5.30 85.56 0.45 4.08 16 9 N -0.54 -16.62 4.65 -900.93 -4.19 -20.81 16 10 C 0.08 2.76 4.81 86.33 0.42 3.18 16 11 C -0.09 -3.76 5.15 30.65 0.16 -3.60 16 12 C -0.07 -3.23 2.20 -10.71 -0.02 -3.26 16 13 C 0.03 1.92 4.45 29.85 0.13 2.05 16 14 C -0.53 -30.96 8.44 25.60 0.22 -30.75 16 15 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 17 N -0.94 -58.48 13.29 21.45 0.28 -58.20 16 18 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 C -0.11 -3.84 5.38 30.65 0.16 -3.67 16 23 C 0.07 1.95 5.46 86.32 0.47 2.42 16 24 H 0.07 0.81 7.85 -2.39 -0.02 0.79 16 25 H 0.06 0.85 7.84 -2.39 -0.02 0.83 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.16 2.21 6.91 -2.91 -0.02 2.19 16 28 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.09 2.07 7.99 -2.39 -0.02 2.05 16 30 H 0.05 1.21 7.94 -2.39 -0.02 1.19 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 2.42 5.43 -2.39 -0.01 2.40 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.30 7.05 -2.39 -0.02 2.28 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 36 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.27 8.02 -2.39 -0.02 2.25 16 42 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -69.18 344.61 1.71 -67.47 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.99 Total: 8.39 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 4.77 Total: -37.17 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -3.90 Total: -79.00 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.86 Total: -8.77 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.32 Total: 1.66 kcal Total: -69.18 1.71 -67.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583935280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.986 kcal (2) G-P(sol) polarization free energy of solvation -69.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds