Wall clock time and date at job start Tue Mar 31 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35953 * 116.99699 * 2 1 4 4 C 1.38571 * 120.02664 * 359.71484 * 3 2 1 5 5 C 1.38783 * 119.89498 * 179.79710 * 4 3 2 6 6 N 1.40028 * 120.01744 * 180.23545 * 5 4 3 7 7 C 1.34779 * 119.99655 * 213.59911 * 6 5 4 8 8 O 1.21287 * 120.00243 * 5.28086 * 7 6 5 9 9 C 1.50695 * 119.99657 * 185.27141 * 7 6 5 10 10 C 1.53001 * 109.47113 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47315 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47315 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47113 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00238 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99895 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00250 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47083 * 90.00087 * 17 15 13 19 19 H 1.48498 * 109.47068 * 210.00149 * 17 15 13 20 20 H 1.48500 * 109.47106 * 330.00165 * 17 15 13 21 21 C 1.38875 * 119.95950 * 0.50865 * 5 4 3 22 22 C 1.38169 * 120.05280 * 359.72826 * 21 5 4 23 23 C 1.38344 * 120.09899 * 0.02562 * 22 21 5 24 24 F 1.35102 * 119.97752 * 179.97438 * 23 22 21 25 25 H 1.09009 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47770 * 60.00417 * 1 2 3 27 27 H 1.09001 * 109.47511 * 300.00117 * 1 2 3 28 28 H 1.07994 * 120.05166 * 0.02562 * 4 3 2 29 29 H 0.96992 * 119.99974 * 33.59815 * 6 5 4 30 30 H 1.08999 * 109.48028 * 300.00207 * 9 7 6 31 31 H 1.09006 * 109.47402 * 60.00483 * 9 7 6 32 32 H 1.08999 * 109.47143 * 300.00207 * 10 9 7 33 33 H 1.09000 * 109.47192 * 60.00391 * 10 9 7 34 34 H 1.08999 * 109.46890 * 300.00001 * 11 10 9 35 35 H 1.09000 * 109.46965 * 59.99892 * 11 10 9 36 36 H 1.09000 * 109.47258 * 300.00387 * 12 11 10 37 37 H 1.09006 * 109.46686 * 59.99570 * 12 11 10 38 38 H 0.96997 * 120.00106 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.97092 * 179.70019 * 21 5 4 40 40 H 1.07999 * 119.94764 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2918 2.3738 -0.0060 5 6 1.9247 3.6090 -0.0017 6 7 1.1650 4.7853 -0.0027 7 6 1.6186 5.8798 -0.6453 8 8 2.6364 5.8192 -1.3021 9 6 0.8609 7.1788 -0.5478 10 6 1.5834 8.2530 -1.3632 11 6 0.8145 9.5721 -1.2638 12 6 1.5367 10.6462 -2.0798 13 6 0.7790 11.9452 -1.9822 14 1 -0.1267 11.9994 -1.3965 15 6 1.2427 13.0647 -2.6400 16 7 2.3460 12.9988 -3.3529 17 14 0.3040 14.6752 -2.5186 18 1 0.8054 15.4541 -1.3580 19 1 0.5027 15.4591 -3.7640 20 1 -1.1426 14.3925 -2.3372 21 6 3.3117 3.6776 -0.0021 22 6 4.0619 2.5173 -0.0011 23 6 3.4335 1.2848 -0.0003 24 9 4.1694 0.1519 0.0002 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 0.2133 2.3187 -0.0102 29 1 0.3124 4.8124 0.4589 30 1 -0.1469 7.0421 -0.9398 31 1 0.8058 7.4899 0.4955 32 1 2.5913 8.3900 -0.9716 33 1 1.6381 7.9418 -2.4064 34 1 -0.1935 9.4354 -1.6552 35 1 0.7602 9.8831 -0.2205 36 1 2.5449 10.7829 -1.6888 37 1 1.5907 10.3348 -3.1230 38 1 2.6720 13.7863 -3.8159 39 1 3.8043 4.6387 -0.0037 40 1 5.1405 2.5727 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:21 Heat of formation + Delta-G solvation = -112.184760 kcal Electronic energy + Delta-G solvation = -22254.381496 eV Core-core repulsion = 18562.444482 eV Total energy + Delta-G solvation = -3691.937013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.94545 -40.93400 -39.78249 -37.69937 -35.06011 -34.74132 -32.68387 -30.77767 -30.38373 -29.24707 -27.57133 -25.74123 -23.44203 -23.06148 -21.98579 -20.46458 -20.05888 -18.85663 -17.63756 -17.61889 -16.66636 -16.44334 -16.37001 -16.12901 -15.78999 -15.31555 -14.78487 -14.63612 -14.51122 -14.24611 -14.00187 -13.29723 -13.19570 -12.84222 -12.66057 -12.31189 -12.16816 -11.81621 -11.77158 -11.63127 -11.56311 -11.02219 -10.60924 -10.54612 -10.47357 -10.38863 -9.98048 -9.66247 -9.28090 -9.04107 -9.02170 -8.32961 -8.17726 -5.97695 -4.00418 0.71860 0.93975 2.42473 2.65694 2.81370 3.29614 3.32224 3.38474 3.41313 3.96567 4.35355 4.46313 4.51977 4.62347 4.70682 4.78736 4.82304 5.03318 5.09428 5.16381 5.22768 5.26750 5.37685 5.54898 5.71484 5.87685 5.96100 6.04688 6.06760 6.20770 6.39407 6.47574 6.76495 6.88241 6.94246 7.08576 7.16199 7.70859 7.86061 7.93431 8.03238 8.44736 9.07237 9.63388 11.13581 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.002119 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.598582 B =13212.801374 C =13727.821434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.115 3.885 4 C -0.215 4.215 5 C 0.185 3.815 6 N -0.681 5.681 7 C 0.512 3.488 8 O -0.509 6.509 9 C -0.137 4.137 10 C -0.105 4.105 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.130 4.130 22 C -0.093 4.093 23 C 0.048 3.952 24 F -0.135 7.135 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.141 0.859 29 H 0.412 0.588 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.149 0.851 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -25.857 10.151 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.068 3.932 4 C -0.236 4.236 5 C 0.090 3.910 6 N -0.327 5.327 7 C 0.301 3.699 8 O -0.382 6.382 9 C -0.177 4.177 10 C -0.143 4.143 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.151 4.151 22 C -0.112 4.112 23 C 0.027 3.973 24 F -0.113 7.113 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.248 0.752 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.166 0.834 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.552 -25.933 9.548 27.862 hybrid contribution -1.105 0.849 0.227 1.411 sum -4.657 -25.085 9.775 27.322 Atomic orbital electron populations 1.23133 0.77856 1.04355 1.01604 1.86150 1.21793 1.25562 1.88665 1.18653 0.90600 0.85084 0.98887 1.20778 1.00350 0.90220 1.12240 1.17514 0.90967 0.85422 0.97114 1.43819 1.23962 1.10288 1.54632 1.21409 0.85844 0.85179 0.77421 1.90741 1.24696 1.84428 1.38315 1.21839 1.00534 0.91469 1.03848 1.21489 0.99430 0.93737 0.99629 1.21650 0.98695 0.93888 1.00548 1.19097 0.95617 0.92047 0.94996 1.21269 1.09548 0.94974 1.30128 0.92756 1.25050 0.95115 0.99033 0.95409 1.69974 1.21724 1.29569 1.32149 0.86604 0.80236 0.83766 0.77438 1.20698 1.21248 1.19933 1.21013 0.91936 0.99457 1.02678 1.20924 1.01227 0.89568 0.99516 1.16930 0.85872 0.83044 1.11455 1.91489 1.76448 1.48890 1.94512 0.87873 0.92316 0.92376 0.84158 0.75155 0.88710 0.88531 0.91614 0.91631 0.93415 0.93389 0.96566 0.96570 0.93015 0.83376 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.01 10.36 -19.59 -0.20 -3.22 16 3 C 0.11 1.19 6.69 -39.20 -0.26 0.93 16 4 C -0.21 -1.89 8.95 -39.26 -0.35 -2.24 16 5 C 0.19 1.90 6.28 -83.68 -0.53 1.38 16 6 N -0.68 -6.14 5.34 -9.86 -0.05 -6.20 16 7 C 0.51 6.28 7.57 -10.99 -0.08 6.20 16 8 O -0.51 -8.28 13.67 5.55 0.08 -8.20 16 9 C -0.14 -1.58 5.70 -27.88 -0.16 -1.73 16 10 C -0.10 -1.73 4.50 -26.73 -0.12 -1.85 16 11 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 12 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.05 1.59 5.46 -17.81 -0.10 1.49 16 16 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.13 -1.48 8.65 -39.37 -0.34 -1.82 16 22 C -0.09 -0.97 10.01 -39.57 -0.40 -1.36 16 23 C 0.05 0.54 7.31 -39.28 -0.29 0.25 16 24 F -0.13 -1.65 17.11 2.25 0.04 -1.62 16 25 H 0.10 0.35 8.14 -51.92 -0.42 -0.08 16 26 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 27 H 0.06 0.22 7.67 -51.93 -0.40 -0.17 16 28 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 29 H 0.41 2.21 8.82 -40.82 -0.36 1.85 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.15 1.84 6.41 -52.49 -0.34 1.50 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -34.49 344.94 -7.04 -41.53 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.59 Total: -2.97 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.22 Total: -14.66 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.68 Total: -32.70 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.13 Total: -11.42 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.49 -7.04 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.655 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds