Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35953 * 116.99699 * 2 1 4 4 C 1.38571 * 120.02664 * 359.71484 * 3 2 1 5 5 C 1.38783 * 119.89498 * 179.79710 * 4 3 2 6 6 N 1.40028 * 120.01744 * 180.23545 * 5 4 3 7 7 C 1.34779 * 119.99655 * 213.59911 * 6 5 4 8 8 O 1.21287 * 120.00243 * 5.28086 * 7 6 5 9 9 C 1.50695 * 119.99657 * 185.27141 * 7 6 5 10 10 C 1.53001 * 109.47113 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47315 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47315 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47113 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00238 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99895 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00250 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47083 * 90.00087 * 17 15 13 19 19 H 1.48498 * 109.47068 * 210.00149 * 17 15 13 20 20 H 1.48500 * 109.47106 * 330.00165 * 17 15 13 21 21 C 1.38875 * 119.95950 * 0.50865 * 5 4 3 22 22 C 1.38169 * 120.05280 * 359.72826 * 21 5 4 23 23 C 1.38344 * 120.09899 * 0.02562 * 22 21 5 24 24 F 1.35102 * 119.97752 * 179.97438 * 23 22 21 25 25 H 1.09009 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47770 * 60.00417 * 1 2 3 27 27 H 1.09001 * 109.47511 * 300.00117 * 1 2 3 28 28 H 1.07994 * 120.05166 * 0.02562 * 4 3 2 29 29 H 0.96992 * 119.99974 * 33.59815 * 6 5 4 30 30 H 1.08999 * 109.48028 * 300.00207 * 9 7 6 31 31 H 1.09006 * 109.47402 * 60.00483 * 9 7 6 32 32 H 1.08999 * 109.47143 * 300.00207 * 10 9 7 33 33 H 1.09000 * 109.47192 * 60.00391 * 10 9 7 34 34 H 1.08999 * 109.46890 * 300.00001 * 11 10 9 35 35 H 1.09000 * 109.46965 * 59.99892 * 11 10 9 36 36 H 1.09000 * 109.47258 * 300.00387 * 12 11 10 37 37 H 1.09006 * 109.46686 * 59.99570 * 12 11 10 38 38 H 0.96997 * 120.00106 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.97092 * 179.70019 * 21 5 4 40 40 H 1.07999 * 119.94764 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2918 2.3738 -0.0060 5 6 1.9247 3.6090 -0.0017 6 7 1.1650 4.7853 -0.0027 7 6 1.6186 5.8798 -0.6453 8 8 2.6364 5.8192 -1.3021 9 6 0.8609 7.1788 -0.5478 10 6 1.5834 8.2530 -1.3632 11 6 0.8145 9.5721 -1.2638 12 6 1.5367 10.6462 -2.0798 13 6 0.7790 11.9452 -1.9822 14 1 -0.1267 11.9994 -1.3965 15 6 1.2427 13.0647 -2.6400 16 7 2.3460 12.9988 -3.3529 17 14 0.3040 14.6752 -2.5186 18 1 0.8054 15.4541 -1.3580 19 1 0.5027 15.4591 -3.7640 20 1 -1.1426 14.3925 -2.3372 21 6 3.3117 3.6776 -0.0021 22 6 4.0619 2.5173 -0.0011 23 6 3.4335 1.2848 -0.0003 24 9 4.1694 0.1519 0.0002 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 0.2133 2.3187 -0.0102 29 1 0.3124 4.8124 0.4589 30 1 -0.1469 7.0421 -0.9398 31 1 0.8058 7.4899 0.4955 32 1 2.5913 8.3900 -0.9716 33 1 1.6381 7.9418 -2.4064 34 1 -0.1935 9.4354 -1.6552 35 1 0.7602 9.8831 -0.2205 36 1 2.5449 10.7829 -1.6888 37 1 1.5907 10.3348 -3.1230 38 1 2.6720 13.7863 -3.8159 39 1 3.8043 4.6387 -0.0037 40 1 5.1405 2.5727 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = -134.386496 kcal Electronic energy + Delta-G solvation = -22255.344235 eV Core-core repulsion = 18562.444482 eV Total energy + Delta-G solvation = -3692.899753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.83026 -41.77152 -40.58029 -38.50659 -36.63137 -35.66147 -34.60516 -31.82888 -31.45766 -30.30581 -28.21539 -27.34964 -24.76753 -23.83931 -23.23495 -21.75773 -21.32709 -19.61113 -18.51845 -18.47291 -18.35550 -17.49354 -17.19057 -17.09754 -16.80525 -16.49790 -16.05370 -15.71888 -15.44446 -15.23369 -15.11722 -14.53793 -14.17139 -14.01705 -13.75613 -13.59756 -13.47444 -13.25316 -12.81635 -12.71505 -12.41116 -12.32639 -12.25413 -12.14027 -12.10712 -11.38067 -11.34290 -11.24494 -11.11282 -10.80874 -10.53799 -9.76878 -8.99767 -8.17804 -6.29668 -0.08601 0.15634 1.41309 1.43253 1.51110 1.54230 1.88421 2.17541 2.42695 2.50723 3.15102 3.20301 3.59919 3.73420 3.94889 4.00487 4.03975 4.17427 4.30582 4.39639 4.43188 4.44455 4.68304 4.70650 4.74795 4.81683 4.86452 4.89236 5.08047 5.15007 5.21198 5.25622 5.35507 5.41389 5.58930 5.64408 5.80621 5.90272 6.21355 6.26588 6.37110 6.89429 7.08987 7.40000 8.94316 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.002119 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.598582 B =13212.801374 C =13727.821434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.113 3.887 4 C -0.200 4.200 5 C 0.178 3.822 6 N -0.660 5.660 7 C 0.514 3.486 8 O -0.558 6.558 9 C -0.125 4.125 10 C -0.099 4.099 11 C -0.096 4.096 12 C 0.017 3.983 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.259 1.259 21 C -0.148 4.148 22 C -0.093 4.093 23 C 0.024 3.976 24 F -0.145 7.145 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.175 0.825 29 H 0.433 0.567 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.062 0.938 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.262 0.738 39 H 0.132 0.868 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -26.238 11.630 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.065 3.935 4 C -0.221 4.221 5 C 0.082 3.918 6 N -0.307 5.307 7 C 0.304 3.696 8 O -0.435 6.435 9 C -0.164 4.164 10 C -0.137 4.137 11 C -0.133 4.133 12 C -0.020 4.020 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.183 1.183 21 C -0.169 4.169 22 C -0.112 4.112 23 C 0.004 3.996 24 F -0.124 7.124 25 H 0.139 0.861 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.192 0.808 29 H 0.274 0.726 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.071 0.929 39 H 0.150 0.850 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.798 -26.346 11.068 29.374 hybrid contribution -0.109 0.891 -0.244 0.931 sum -6.907 -25.455 10.824 28.510 Atomic orbital electron populations 1.23489 0.75482 1.06123 1.02935 1.86142 1.24312 1.25317 1.88445 1.18785 0.90396 0.85981 0.98298 1.20985 1.01838 0.88784 1.10504 1.17627 0.90714 0.86282 0.97173 1.43532 1.24433 1.09023 1.53724 1.21501 0.85108 0.86040 0.76925 1.90743 1.26864 1.85170 1.40696 1.21703 1.00835 0.89171 1.04677 1.21275 0.98782 0.94166 0.99452 1.21442 0.98706 0.93162 1.00011 1.19072 0.94791 0.93997 0.94148 1.21766 1.10039 0.95954 1.30030 0.91501 1.26096 0.96072 1.03437 0.94917 1.70133 1.23652 1.30836 1.33254 0.85395 0.79324 0.78481 0.77528 1.19771 1.21103 1.18252 1.20988 0.92929 0.98937 1.04043 1.21013 1.01921 0.89225 0.99083 1.17201 0.86715 0.82886 1.12804 1.91452 1.76831 1.49396 1.94743 0.86137 0.91296 0.90571 0.80774 0.72628 0.85544 0.85521 0.93629 0.93733 0.91944 0.91917 0.99727 0.99748 0.92910 0.84991 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.87 10.36 -93.02 -0.96 -6.84 16 3 C 0.11 2.19 6.69 22.52 0.15 2.34 16 4 C -0.20 -3.03 8.95 22.48 0.20 -2.83 16 5 C 0.18 3.36 6.28 38.11 0.24 3.60 16 6 N -0.66 -10.14 5.34 -303.49 -1.62 -11.76 16 7 C 0.51 11.78 7.57 87.66 0.66 12.45 16 8 O -0.56 -18.41 13.67 -3.05 -0.04 -18.45 16 9 C -0.12 -2.50 5.70 29.85 0.17 -2.33 16 10 C -0.10 -3.24 4.50 30.60 0.14 -3.10 16 11 C -0.10 -3.66 5.15 30.60 0.16 -3.51 16 12 C 0.02 0.91 4.97 29.85 0.15 1.06 16 13 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 14 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 15 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 16 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 17 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.15 -3.39 8.65 22.41 0.19 -3.19 16 22 C -0.09 -1.99 10.01 22.28 0.22 -1.76 16 23 C 0.02 0.55 7.31 22.46 0.16 0.72 16 24 F -0.15 -3.64 17.11 44.97 0.77 -2.87 16 25 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 27 H 0.08 0.31 7.67 -2.39 -0.02 0.29 16 28 H 0.18 1.34 6.30 -2.91 -0.02 1.32 16 29 H 0.43 2.82 8.82 -92.71 -0.82 2.00 16 30 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 33 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.13 3.45 6.41 -2.91 -0.02 3.43 16 40 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -78.36 344.94 4.95 -73.41 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.24 Total: 4.33 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.26 Total: -25.82 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.34 Total: -70.02 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.01 Total: -25.28 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.77 Total: -2.87 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.36 4.95 -73.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.978 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds